New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	925901 =	63 (0.840)	7 (0.090) +C	3/296	14.4	13.3%	noncoding (71/88 nt)	serW	tRNA‑Ser
	?	NC_000913	= 1097218	29 (0.390)					intergenic (+389/+347)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

GCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGT  >  NC_000913/1097071‑1097306                                                                                                                                                     |                                                                                         gCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTT‑Aggggggggt                                                                                        >  2:380095/1‑148 (MQ=18) gCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGGtt                                                                                       >  2:991881/1‑151 (MQ=18) gCTCACTGCGTTCACGGCCTGGCCAACTTGTTGTCGTCTTTTGTCCACCCCCGGTCGGGGCGTCGCGGCCCCCCGGTGTGTGCAATAAACGAAAAAAAAGCCCGTTCTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGAtt                                                                                       <  1:650626/151‑1 (MQ=11)   tgtcTGCGTTCACGGTCTGCACAACTGGCTGTCGCCAGTTGTCGACCCCCAGACGGGGCTTCTCAGCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGAtt                                                                                       <  1:757790/146‑1 (MQ=11)      cTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGAT‑Aggggggggtgga                                                                                     >  1:832198/1‑143 (MQ=255)        gCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGATTGACtc                                                                                  <  2:1160502/149‑1 (MQ=33)           ttCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGGTTGACtcgctt                                                                              >  2:182901/1‑150 (MQ=18)            tCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGATTGACtcgcttc                                                                             <  2:316450/150‑1 (MQ=33)             cACGGTCTGTCCAACCGGCTGTCGCCAGCTGTCGGCCCCCGGTCGGGGGTTCGCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGATTGACtcgcttcg                                                                            <  1:605364/150‑1 (MQ=255)              aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGATTGACtcgcttcgct                                                                          <  2:306170/151‑1 (MQ=33)                    tGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑GGGGGGGGATTTAATCGCGTCGCTCGccc                                                                     >  2:418971/1‑150 (MQ=255)                         aaCTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑GGGGGGGGGTTGACTCGCTTCCCTCGCCCCGCgg                                                                >  2:401131/1‑150 (MQ=255)                              gCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCa                                                             <  2:45134/148‑1 (MQ=33)                              gCTGTCGATAGTTGTCGACCCCAGGTCGGGGCTTCTCGTCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCa                                                             <  1:573734/148‑1 (MQ=255)                                   cGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTc                                                     <  2:974643/151‑1 (MQ=33)                                    gCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGGTTGAAAAGGTTTCCTCGCCCTGCggggcggccccccc                                                    >  1:1106173/1‑140 (MQ=11)                                      cggttggtgACCCCCGTTCGGTGCATCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTGTCGTACGTGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCt                                                      <  2:544404/139‑1 (MQ=11)                                       aGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑GGGGGGGGGTTGACTCGCTTCGCCCCCCCTGCGGGCAGCCCGcccccc                                                  >  2:688060/1‑145 (MQ=11)                                        gTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGCGGGGGGGGGTTTACCCGCCTCTCTCGCCCTGCGGGCAGCCCGccccct                                                  >  2:233958/1‑145 (MQ=11)                                           gTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGtt                                             <  2:284682/151‑1 (MQ=33)                                           gTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGtt                                             <  2:1159000/151‑1 (MQ=33)                                             cGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGG‑GGGGGGGGGTTAACAACCTTCGCTCGCCCTGCGGGGCGccccccccccccggtcc                                           >  1:776508/1‑137 (MQ=11)                                                 ccaaggTAGGGGGTTCTCGTCCCCCGGGTGTTTGCAATACACGAAAAAAAGGCCCGTACTTCCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCAc                                          <  1:666131/144‑1 (MQ=11)                                                     ggTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGATTGACTCGCTTTGCCCGCCCCGCGGGCAGCCCCCCCACTGCGTTTACGGGCt                                     >  2:383670/1‑149 (MQ=11)                                                          gggCTTCTCAGCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTg                                    <  1:514197/145‑1 (MQ=14)                                                            gCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTg                            <  1:991650/151‑1 (MQ=31)                                                                   aTCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGGGTTATTCCCTTCTCTCCCCCTTCGGGGAACCCCCCCCCCGCGTTCCCGGTTTGTTCCACTGGCCGt                       >  2:957031/1‑149 (MQ=11)                                                                   aTCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTg                        <  2:380507/148‑1 (MQ=31)                                                                             tttgtgCAATACGCAAAAAAAAAGCCCGTCCTTTCTTACGGGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTc            <  1:182673/148‑1 (MQ=11)                                                                              gtgtgCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGGGTTACTCGCTTCGCTCGCCCTGCGGGCAGGCCGCCCACCGCGGTTCCGGGCTGTTCAACTGGCTGGCGGCCGtttgt            >  2:963020/1‑146 (MQ=11)                                                                              gtgtgCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGG‑AGAGGGGGGTTTACGCCCGTCGCTCGCCCTGCGGGCAGCCCGCCCACCGCGGTTACGGGCTGTCCCACTGGCGGTCGCCAGgtgt             >  1:194591/1‑148 (MQ=11)                                                                                      tACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGGTTGACTCGCCTCGCCCGCCCTGCGGGGAGGCCGCCCACCGCGGTTACCGGCTGTCCCACTGGCCGGCGCCCCGTGTCGCAcccccgg  >  1:976294/1‑148 (MQ=11)                                                                                                                                                     |                                                                                         GCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTG‑AGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGT  >  NC_000913/1097071‑1097306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.