| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,585,086 | 0 | A | C | 53.2% | 46.8 / 73.0 | 47 | Y580D (TAC→GAC) | ggt | gamma‑glutamyltranspeptidase |
| Reads supporting (aligned to +/- strand): ref base A (21/1); new base C (0/25); total (21/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.75e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.48e-10 | |||||||||||
TATTGATAAAGACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAA‑CCGCTGGAAGAA‑TATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTGCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGCCTCTTTCAGCGCCACTTTCTGACCTTTTGCTTCCAGCAGCTTGAGCGT > NC_000913/3584938‑3585227 | tattGATAAAGACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAA‑CCGCTGGAAGAA‑TATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTGCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTAcc > 2:344739/1‑151 (MQ=255) aaGACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAA‑CCGCTGGAAGAA‑TATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTGCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGtt > 2:79569/1‑151 (MQ=255) cAGTGGTGAAATTCATTCTCTGGGAACGGCAAAA‑CCGCTGGAAGAA‑TATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTGCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGTTAAat > 1:36759/1‑151 (MQ=255) gtggtaAAATTCATTCTCGGGGAACGGCAAAC‑CCGCTGAAAAAA‑TATCTACAGGATTACAAAAAAAAAAAGGCTCCCTTCGGCTTGCCCTGAAAAAATACCCCTCTCCCCACGAAGAGGGCCGCTAACCTT‑AGTCCCCCGCCGTTAAatc < 2:791535/150‑1 (MQ=255) cattcTCTGGGAACGGCAAAA‑CCGTTGGAAGAA‑TATCTACAGGATTACGAAATAAAAAAGGATACCTTCGGCTTGCCCTGACAAAATACCCCTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGTTAAACCATCCACCGAgtg > 1:648159/1‑149 (MQ=255) attcTCTGGGAACGGCAAAA‑CCGCTGGAAGAA‑TATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTGCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGTTAAATCATCCACCGAgcgc > 1:983242/1‑151 (MQ=255) ttcCCTGGGAGCGCAAACC‑CCGCGGGAAGAA‑TATCTACAGGCTTACAAAAAAAAAGAGGCTACCTCCGTCTCCCCCTAACAAAATCCCCCTCTCCCCGC‑AAGGGGGCCCGTAAACTTAAGCCCCCCGCCGTTAAATCATCCACCGAgc < 1:205738/148‑1 (MQ=255) ctGGGAACGGCAAAA‑CCGCTGGAAGAA‑TATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTGCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTc > 2:423025/1‑151 (MQ=255) cgggAAAGGAAAAACCCGCGGAAAAAA‑TATCTAAAGAATAAAAAAAAAAAAAAGGCTCCCTTCGGCTTCCCCTAAAAAAATCCCCCTCTCCCCACGAAGAGGCCCGCTACCCTT‑AGTCCCCCGCCGTTAAATCATCCACCGAGCGCggg < 1:573405/148‑1 (MQ=255) gggAACGGAAAAC‑CCGCTGGAAGAA‑TATCTAAAGGATTAAAAAAAAAAAAAGGCTTCCTCCGGCTTGCCCTGACAAAGTACCCCTCTCCCCCGGAGGGGGCCCGCTACCCTT‑TGTCCCCCGCCGTTAAATCATCCACCGAgcgc < 2:154880/144‑1 (MQ=255) gggAACGACAAAC‑CCGCTGAAAGAA‑TATCTACAGGATTACAAAATAAAAAAGGCTCCCTTCGGCTTGCCCTGACAAAATGCCCCTCTTCCCACGAAGGGGCCCGCTACCCTT‑AGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCgg < 2:901473/151‑1 (MQ=255) gggaaggaaaaa‑CCCGTGGAAAAATTATATACAGGTTAACAAAAAAAAAAGAGCTCCTTTCGCCTTGCCCTAACAAAATCGCCCTCTCCCCGGGAAGAGGGCCGTTACCCTT‑ATACCCCCGCCGTTAAATCATCCACCGAGCGCGGGTc < 1:1026047/141‑1 (MQ=255) cgccAAAA‑CCGCGGAAAGAA‑AATCTACAGGATTACAAAAAAAAAAAGGCTCCCTCCGGCTTCCCCTAACAAAATACCCCTCCCCCCCCGAAGGGGGCCGCTACCCTT‑ATTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGa < 1:781448/144‑1 (MQ=255) cGGAAAAC‑CCGCTGAAAAAA‑TATCTACAGGATTAAAAAAAAAAAAAGCCTCCCTTCGGCTTCCCCTAAAAAAATACCCCTCTCCCCACGAAGGGGCCCGCTACCCTT‑AGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATgc < 2:676377/150‑1 (MQ=255) a‑CCGCTGGAAGAA‑TATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTGCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTAc > 2:1125968/1‑150 (MQ=255) ccGCTGGAAGAA‑TATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTGCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACa > 2:335131/1‑150 (MQ=255) cagaa‑TATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTACCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCg > 1:702448/2‑151 (MQ=255) aaaaa‑TATCTACAGGATAAAAAAAAAAAAAGGGCTCCCTGCGGCTTCCCCTGAAAAAATACCCCTCCCCCCCGAAAGAGGGCCGCAACCCTT‑AGCCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCa < 1:937674/145‑1 (MQ=255) aaaaa‑TATCAACAGAATTAAAAAAAAAAAAGGGCTCCCTCCTGCTTGCCCGGAAAAAATGCCCTTCTCCCCAAGAAGGGGGCCGCTACCTTT‑AGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACa < 1:901229/140‑1 (MQ=255) aaaa‑TATCAACAGGTTAACAAAAAAAAAAAGCCTCCCTCCGCCTTCCCCTAAAAAAATCCCCCTCTCCCCACGAGGGGGGCCGTTACCCTT‑AGCCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGt < 1:79546/149‑1 (MQ=255) aa‑TATCTACAGGATTACAAAAAAAAAAAGGCTCCCTCCGGCTTCCCCTGACAAAATACCCCTCTCCCCACGAGGAGGGCCGCTACCCTT‑AGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTcc < 2:932724/151‑1 (MQ=255) tatCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTGCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCgg > 2:926733/1‑151 (MQ=255) cTACAGTATTACGAAAAAAAAAAGGCTCCCTTCGGCTTGCCCTAAAAAAATAGCCCTCTCCCCACGAAGAGGGCCGCTACCCTT‑AGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCg < 2:568320/147‑1 (MQ=255) cTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTGCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGccc > 2:30149/1‑151 (MQ=255) tACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTGCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGccc > 1:681382/1‑150 (MQ=255) aaaaaaaaaaaGCCTCCCTTCGGCTTCCCCTAAAAAAATACCCCTCTCCCCACGAAGGGGCCCGCTAACCTT‑AGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCt < 1:504519/150‑1 (MQ=255) aaaaaaaaaaGGCTCCCTTCGGCTTCCCCTAAAAAAATACCCTTCTCCCCACGAAGGGGCCCGCTACCCTT‑AGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATa < 2:635816/145‑1 (MQ=255) aaaaaGGCTACCTTCGGCTTGCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTgtgt > 1:161554/1‑151 (MQ=255) ttCGGCTTGCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGc > 1:1029377/1‑151 (MQ=255) gCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGCCTCTTTc > 1:1188594/1‑150 (MQ=255) cTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGCCTCTTTCAgc > 1:1124977/1‑150 (MQ=255) cTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGCCTCTTTCAgc > 1:529412/1‑150 (MQ=255) aaaaaaTAGCCCTCTCCCCACGAAGAGGCCCGCTACCCTT‑AGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGCCTCTTTCAGCGcc < 2:1118832/148‑1 (MQ=255) aaaaTCCCCCTCTCCCCACGAAGGGGCCCGCTACCCTT‑AGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGCCTCTTTCAGCGCCACt < 2:137389/151‑1 (MQ=255) aaaTAGCCCTCTTCCCACGAGGAGGCCCGCTACCCTA‑AGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGCCTCTTTCAGCGCCACtt < 2:1188858/151‑1 (MQ=255) aaTACCCCTCTCCCCACGAAGGGGGCCGCAACCCTT‑AGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGCCTCTTTCAGCGCCACttt < 2:102475/151‑1 (MQ=255) atcccccTCCCCCCACGAAGAGGGCCGCTACCCTT‑AGCCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGCCTCTTTCAGCGCCACTTTc < 1:161513/147‑1 (MQ=255) aGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGCCTCTTTCAGCGCCACTTTCt > 1:458616/1‑150 (MQ=255) cccTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGCCTCTTTCAGCGCCACTTTCTGAc > 1:375724/1‑151 (MQ=255) cccTCTCCCCACGAAGAGGCCCGCTACCCTT‑AGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGCCTCTTTCAGCGCCACTTTCTg < 2:1157148/149‑1 (MQ=255) ccccACGAGGGGGCCCCCAAACTTT‑ACTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGCCTCTTTCAGCGCCACTTTCTGACCtttt < 1:885455/149‑1 (MQ=255) ccccACGAAGGGGCCCGCTACCCTT‑AGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGCCTCTTTCAGCGCCACTTTCTGACCtt < 2:75598/147‑1 (MQ=255) cccACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGCCTCTTTCAGCGCCACTTTCTGACCTTTTGc > 2:765371/1‑151 (MQ=255) agggggccggctccccTG‑AGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGCCTCTTTCAGCGCCACTTTCTGACCTTTTGCTTCca < 1:963425/136‑1 (MQ=255) cGCTACCTTT‑AGCCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGCCTCTTTCAGCGCCACTTTCTGACCTTTTGCTTCCAGCAGCTTGa < 1:1173500/151‑1 (MQ=255) cGCTACCCTT‑AGTCCCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGCCTCTTTCAGCGCCACTTTCTGACCTTTTGCTTCCAGCAGCTTGa < 2:693301/151‑1 (MQ=255) aCCTT‑AGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGCCTCTTTCAGCGCCACTTTCTGACCTTTTGCTTCCAGCAGCTTGAGCGt > 1:242825/1‑150 (MQ=255) | TATTGATAAAGACAGTGGTGAAATTCATTCTCTGGGAACGGCAAAA‑CCGCTGGAAGAA‑TATCTACAGGATTACGAAATAAAAAAGGCTACCTTCGGCTTGCCCTGACAAAATAGCCCTCTTCCCACGAAGAGGGCCGCTAACCTT‑AGTACCCCGCCGTTAAATCATCCACCGAGCGCGGGTCGGATGCGCCGTACAACTCACCGTCCGGCCCAACCATAATGCTTTGTGTACTGCCCATCGCCTCTTTCAGCGCCACTTTCTGACCTTTTGCTTCCAGCAGCTTGAGCGT > NC_000913/3584938‑3585227 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |