Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 736,382 T→C intergenic (+163/‑63) ybfC → / → ybfQ putative secreted protein/pseudogene, H repeat‑associated protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913736,3820TC100.0% 226.2 / NA 59intergenic (+163/‑63)ybfC/ybfQputative secreted protein/pseudogene, H repeat‑associated protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (29/30);  total (29/30)

AAAACAAATTAATCATTGTGAAAAATTATATAACTCATGGAATAGGTGTTTATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGTCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTACACCCGATTACAGACAAGCCTGGAAAGTGGTGCATAAATTGTCAGAT  >  NC_000913/736234‑736528
                                                                                                                                                    |                                                                                                                                                  
aaaaCAAATTAATCATTGTGAAAAATTATATAACTCATGGAATAGGTGTTTATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCt                                                                                                                                                  >  1:336090/1‑151 (MQ=255)
 aaaCAAATTAATCATTGTGAAAAATTATATAACTCATGGAATAGGTGTTTATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTa                                                                                                                                                 <  1:216860/151‑1 (MQ=255)
   aCAAATTAATCATTGTGAAAAATTATATAACTCATGGAATAGGTGTTTATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTaaa                                                                                                                                               <  2:737857/151‑1 (MQ=255)
    cAAATTAATCATTGTGAAAAATTATATAACTCATGGAATAGGTGTTTATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAg                                                                                                                                              <  2:679898/151‑1 (MQ=255)
     aaaTTAATCATTGTGAAAAATTATATAACTCATGGAATAGGTGTTTATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAg                                                                                                                                              >  2:207637/1‑150 (MQ=255)
            tCATTGTGAAAAATTATATAACTCATGGAATAGGTGTTTATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGttttt                                                                                                                                      >  1:824619/1‑151 (MQ=255)
                tgtgAAAAATTATATAACTCATGGAATAGGTGTTTATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCAt                                                                                                                                   <  2:17429/150‑1 (MQ=255)
                         ttATATAACTCATGGAATAGGTGTTTATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATAc                                                                                                                          >  1:477994/1‑150 (MQ=255)
                          tatataACTCATGGAATAGGTGTTTATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACAt                                                                                                                        >  2:78916/1‑151 (MQ=255)
                           atataACTCATGGAATAGGTGTTTATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACAt                                                                                                                        <  1:937440/150‑1 (MQ=255)
                           atataACTCATGGAATAGGTGTTTATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATg                                                                                                                       <  1:329252/151‑1 (MQ=255)
                              taACTCATGGAATAGGTGTTTATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATc                                                                                                                    >  2:401782/1‑151 (MQ=255)
                                  tCATGGAATAGGTGTTTATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAAt                                                                                                                >  1:914777/1‑151 (MQ=255)
                                  tCATGGAATAGGTGTTTATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAAt                                                                                                                >  2:357286/1‑151 (MQ=255)
                                     tGGAATAGGTGTTTATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACt                                                                                                             >  2:94101/1‑151 (MQ=255)
                                       gAATAGGTGTTTATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTcc                                                                                                           >  2:45482/1‑151 (MQ=255)
                                       gAATAGGTGTTTATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTcc                                                                                                           >  1:31721/1‑151 (MQ=255)
                                            ggTGTTTATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACa                                                                                                      <  1:122614/151‑1 (MQ=255)
                                                  tATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAGGTTCAACAAGTGAGATACTGCTTATTACCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACataaat                                                                                                 >  2:280084/1‑150 (MQ=255)
                                                   aTTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACataaata                                                                                                <  2:455122/150‑1 (MQ=255)
                                                      ttGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGt                                                                                            >  1:500759/1‑151 (MQ=255)
                                                        gCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTg                                                                                           >  2:557049/1‑150 (MQ=255)
                                                          gTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAAc                                                                                        >  1:506193/1‑151 (MQ=255)
                                                                 ttGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATgg                                                                                  >  1:57299/1‑150 (MQ=255)
                                                                  tGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGa                                                                                 >  2:610546/1‑150 (MQ=255)
                                                                   gCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAAc                                                                               <  1:762784/151‑1 (MQ=255)
                                                                     aGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACtt                                                                             <  2:712788/151‑1 (MQ=255)
                                                                     aGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACtt                                                                             >  2:961578/1‑151 (MQ=255)
                                                                       ggAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTaa                                                                           <  1:997088/151‑1 (MQ=255)
                                                                       ggAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTaa                                                                           <  2:350704/151‑1 (MQ=255)
                                                                          aaGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTaaaaa                                                                        <  2:381141/151‑1 (MQ=255)
                                                                           aGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTaaaaaa                                                                       <  1:489201/151‑1 (MQ=255)
                                                                           aGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTaaaaaa                                                                       <  2:298770/151‑1 (MQ=255)
                                                                                aCGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACAAGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGAt                                                                  <  1:628331/151‑1 (MQ=255)
                                                                                    aaCGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGa                                                               <  2:824542/150‑1 (MQ=255)
                                                                                     aCGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAAc                                                             <  1:701201/151‑1 (MQ=255)
                                                                                          aCTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATAtt                                                        >  2:178851/1‑151 (MQ=255)
                                                                                             tttttGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTc                                                      <  2:88399/150‑1 (MQ=255)
                                                                                             tttttGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTc                                                      <  2:583118/150‑1 (MQ=255)
                                                                                              ttttGGACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACACATGGAACTTAAAAAATTGATGGAACATATTTCt                                                     >  2:468892/1‑150 (MQ=255)
                                                                                                ttGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTAtt                                                  >  1:113955/1‑151 (MQ=255)
                                                                                                 tGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTAtt                                                  <  2:98828/150‑1 (MQ=255)
                                                                                                       aaaTAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTACAcc                                             <  1:205537/149‑1 (MQ=255)
                                                                                                           aatTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTACACCCGAtt                                        <  2:267663/150‑1 (MQ=255)
                                                                                                           aatTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTACACCCGAtt                                        >  1:589822/1‑150 (MQ=255)
                                                                                                            atTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTACACCCGATTAc                                      >  1:926672/1‑151 (MQ=255)
                                                                                                              tCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTACACCCGATTACa                                     <  1:644656/150‑1 (MQ=255)
                                                                                                               cGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTACACCCGATTACAGa                                   <  2:477943/151‑1 (MQ=255)
                                                                                                               cGAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTACACCCGATTACAGa                                   <  2:960126/151‑1 (MQ=255)
                                                                                                                gAATTTTAAGTTCAACAATTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTACACCCGATTACAGAc                                  >  1:317131/1‑151 (MQ=255)
                                                                                                                            caacaaTTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTACACCCGATTACAGACAAGCCTGGAAAg                      <  2:847588/151‑1 (MQ=255)
                                                                                                                             aacaaTTGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTACACCCGATTACAGACAAGCCTGGAAAg                      >  2:878049/1‑150 (MQ=255)
                                                                                                                                   tGAGATACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTACACCCGATTACAGACAAGCCTGGAAAGTGGTGc                >  1:461090/1‑150 (MQ=255)
                                                                                                                                    gagaTACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTACACCCGATTACAGACAAGCCTGGAAAGTGGTGCAt              >  2:206485/1‑151 (MQ=255)
                                                                                                                                     agaTACTACTTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTACACCCGATTACAGACAAGCCTGGAAAGTGGTGCAt              >  1:204419/1‑150 (MQ=255)
                                                                                                                                            actTATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTACACCCGATTACAGACAAGCCTGGAAAGTGGTGCATAAATTGTc      <  2:360735/151‑1 (MQ=255)
                                                                                                                                               tATTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTACACCCGATTACAGACAAGCCTGGAAAGTGGTGCATAAATTGTCa     <  1:641281/149‑1 (MQ=255)
                                                                                                                                                aTTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTACACCCGATTACAGACAAGCCTGGAAAGTGGTGCATAAATTGTc      >  2:84225/1‑147 (MQ=255)
                                                                                                                                                aTTGCCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTACACCCGATTACAGACAAGCCTGGAAAGTGGTGCATAAATTGTCAGat  <  2:287133/151‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
AAAACAAATTAATCATTGTGAAAAATTATATAACTCATGGAATAGGTGTTTATTTTGCGTTCCATTTGCAGGGAAAGATCACGTAACGCTACTTTTTTGTACTAAATAATTCGAATTTTAAGTTCAACAATTGAGATACTACTTATTGTCTAAAGCTGTTTTTCATAGCTTATACATGATCAAATACTCCTTACATAAATAAGGTGAACAAATGGAACTTAAAAAATTGATGGAACATATTTCTATTACACCCGATTACAGACAAGCCTGGAAAGTGGTGCATAAATTGTCAGAT  >  NC_000913/736234‑736528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: