Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,825,061 | 0 | G | A | 45.6% | 65.6 / 28.2 | 57 | intergenic (‑124/+79) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
Reads supporting (aligned to +/- strand): ref base G (25/6); new base A (0/26); total (25/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.52e-11 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TTTACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAA > NC_000913/1824914‑1825202 | tttACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGagaaaagaa < 1:403127/150‑1 (MQ=255) cGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAAccg < 1:967428/151‑1 (MQ=255) tatCAAAGTATTCCATCCTCGCTCCCGCCCCTTTCTTTTCATTTTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTTTTTGAGAAGAGAAAAGAAAAccgccg < 2:894872/150‑1 (MQ=255) tCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATc > 1:574293/1‑151 (MQ=255) tCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCAcc > 2:866511/1‑151 (MQ=255) ccATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCg > 2:1034786/1‑151 (MQ=255) cTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCAtt > 1:60874/1‑150 (MQ=255) cTCGCCCCCGGCCCTTTTTTTTCTTTTTTTTCGTTGAGGTAACGGTGTTTTTTTACCGGCAACTGGGTTGATTTAGTTTA‑GTGGTGATCAGTTTTTTTTTACAA‑GGGTTTGAGAAGAGAAAAAAAAACCGCCGATCCTGTCCACCGCa < 2:565560/148‑1 (MQ=255) cGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTA‑GTGGTGATCAAGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAgg > 2:776438/1‑151 (MQ=255) ggCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGTTTATCGGCAACTGGGGTGTTTTACGTTA‑GGGGTGATCGGGTTTTTTTTAAAA‑CTGTTGGAGAAGAGAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAgg < 1:91684/150‑1 (MQ=255) cccGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGt > 2:659238/1‑149 (MQ=255) ctttCTTTCCTTTGTTATCTTGGAGGTAACGGTGGGTGTTTATGGGCATCTGGGGTGATTTTCTTTT‑GTGTTAATCCGGTTTTTTTCACAA‑CTTTTGGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGt < 1:14274/148‑1 (MQ=255) tttttttCATTGTTTTCGTTCAGGTAACGGTGGTTGTTTACCGGCAACTGGGGTAATTTACGTTA‑GTGGTGATC‑GGTTTTTTTTAAAATTTGTTTGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTgg < 2:163756/147‑1 (MQ=255) tttttttCATTGTTATCGTTCAGGTACCTGTGGATGTTTACCGGCAACTGGGGTAATTTACGTTA‑GTGGTGATCAGTTTTTTTTTACAA‑TTTTTGGAAAAGAAAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGt < 2:162006/145‑1 (MQ=255) tCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGa > 2:143796/1‑150 (MQ=255) ttttCATTTTTATGGTTAAGGTAACGGGGGTTGTTTTTCGGCAACTCGGGTGATTTCCTTAG‑GTGGTGACCGGTTTTTTTTTACAA‑CTGTTGGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGAc < 2:722854/149‑1 (MQ=255) ttttCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACa > 1:723475/1‑150 (MQ=255) ttttAATTGTTATCGTTCAGGTACCGGTGGATGGTTTTCGGCACCTGGGGTAATTTACGTTA‑GTGGTGATCAGGTTTTTTTTACAA‑TTGTTTGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGa < 2:195862/148‑1 (MQ=255) cATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGAcc > 2:1009136/1‑151 (MQ=255) ttGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACcg < 1:913657/150‑1 (MQ=255) ttATCGTTCAGGTAGCCGTGGATGGTTAGCGGCATCTCGGGTTATTTACGTAA‑GTGTTGATGAGGTTTTTTTTACAA‑CGGTTGGAAAAAAAAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACcggc < 2:606379/149‑1 (MQ=255) tCGTTCAGGTACCGGTGGATGGTTATCGCCACCTGGGGTGTTTTACGTTA‑GTGGTGATCAGGTTTTTTTTACAA‑CTGTTTGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTc < 1:57665/150‑1 (MQ=255) gTTCAGGTAACGGTGGATGTTTATCGGCAACGGGGGTGTTTTACGTTA‑GGGGTGATCGGGTTTTTTTTACAA‑CTGTTGGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCtt < 1:866553/150‑1 (MQ=255) cAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCtt > 2:969383/1‑147 (MQ=255) gTGGATGGTTATCGGCAACTCGGGTGATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGc > 1:897272/1‑150 (MQ=255) ggATGGTTATCGGCACCGGGGGTGATTTACGTTA‑GTGGTGATCGGGTTTTTTTTACAA‑TTTTTTGAGAAGAAAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTg < 2:192409/150‑1 (MQ=255) tGGTTATCGGCAACTCGGGTGATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGaa > 1:252202/1‑149 (MQ=255) gtttACCGGCAACTGGGGTATTTTACTTTA‑GGGGTAATCGGGTTTTTTTTACAA‑CTGTTGGAAAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAg < 1:274000/148‑1 (MQ=255) tttttCGGCAACTGGGTTATTTTACTTTA‑GTGGTGATCGGTTTTTTTTTACAA‑TTTTTGGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGa < 2:368530/142‑1 (MQ=255) cAACTCGGGTGATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTcag > 1:916756/1‑150 (MQ=255) aaCTGGGGTGATTTACGTTA‑GTGGTGTTCAGTTTTTTTTTAAAA‑TTGTTGGAAAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTc < 1:480042/147‑1 (MQ=255) aCTCGGGTGATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTTGCTGAAAGATTATTcagc > 2:425996/1‑149 (MQ=255) cGGGTGATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGGTTTTTGGCTGAAAGATTATTcagcagat > 2:410393/1‑148 (MQ=255) gggTTATTTA‑GTTAGGTGGTAATCAGTTTTTTTTAACAA‑TTTTTTGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGc < 2:865672/151‑1 (MQ=255) gATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAgg > 2:104357/1‑150 (MQ=255) tttACTTTA‑GTGGTAATCAGTTTTTTTTTACAA‑TTTTTTGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAgg < 2:416139/148‑1 (MQ=255) tttACGTTA‑GTGGTGATCAGGTTTTTTTTAAAA‑CTGTTGGAAAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAg < 1:320859/147‑1 (MQ=255) ggtgATCAGTTTTTTTTTACAA‑TTTTTAGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCtttt < 2:417020/150‑1 (MQ=255) ggtgATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCtttt > 1:41527/1‑150 (MQ=255) gtcagcgggttttttttACAT‑CTTTTTAAAAAGAAAAAAAAAACCCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCttt < 2:26923/138‑1 (MQ=255) tCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTTcc > 2:892460/1‑148 (MQ=255) tttttttaACAA‑TTTTTTGAGAATAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGa < 2:651761/148‑1 (MQ=255) cTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGCAGTGGACAAGACCGGCGGTCTTAAGTTTTTTTGCTGAAAGGTTATTCAGCAGTTGCCGGCATTTTACCTTTTTCCCCTGGACg > 2:539133/1‑151 (MQ=255) ttttttACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGtt > 1:776403/1‑151 (MQ=255) atcTGTTTGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAg < 1:985911/148‑1 (MQ=255) accTGTTGGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCa < 1:92418/147‑1 (MQ=255) ttGTTGGAAAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGAc < 2:400507/149‑1 (MQ=255) cTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTTCCGCTGGACGTTCTGTCAGACg > 2:287429/1‑151 (MQ=255) tttttaaaaaaaaaaaaaaaacCCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGAc < 2:164578/136‑1 (MQ=255) tttttGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGAc < 1:835279/147‑1 (MQ=255) tttttGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGAc < 1:150102/147‑1 (MQ=255) tttGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTTAGTTTTTTGGCTGAAAGATTATTCCGCAGTTTCCGGCATTTTACCTTTTTCCCCTGGACGTTTTGTTCGACGCtt > 2:59057/1‑151 (MQ=255) ttagaaaagaaaaAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGc < 1:305834/143‑1 (MQ=255) tGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTtct > 1:111609/1‑151 (MQ=255) agaaaaaaaAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTCCTGTCAGACGCTtct < 1:825611/149‑1 (MQ=255) aaaagagaaAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACg < 1:969426/142‑1 (MQ=255) gaagagaaAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGGTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGAGGTTCTGTCAGACGCTTCTCa > 1:1014521/1‑150 (MQ=255) aagaaaaAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCaa < 2:624571/150‑1 (MQ=255) agagaaAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTTCCGCTGGACGTTCTGTCAGACGCTTCTCaaa > 1:211524/1‑150 (MQ=255) | TTTACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGGTAACCGTGGATGGTTATCGGCAACTCGGGTGATTTACGTTA‑GTGGTGATCAGGCTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAA > NC_000913/1824914‑1825202 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |