Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_00091315,3950GA41.4% 66.1 / 26.2 59intergenic (+97/‑50)dnaJ/insL1chaperone Hsp40, DnaK co‑chaperone/IS186 transposase
Reads supporting (aligned to +/- strand):  ref base G (8/26);  new base A (24/0);  total (33/26)
Fisher's exact test for biased strand distribution p-value = 1.40e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCC  >  NC_000913/15246‑15528
                                                                                                                                                     |                                                                                                                                           
cAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAg                                                                                                                                             <  1:572982/150‑1 (MQ=255)
    gagCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTa                                                                                                                                       <  1:188047/151‑1 (MQ=255)
         tcttTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACt                                                                                                                                   <  1:137224/149‑1 (MQ=255)
             tGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAgg                                                                                                                              <  2:1056917/150‑1 (MQ=255)
              gATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAgg                                                                                                                              <  1:487183/149‑1 (MQ=255)
               aTGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGtt                                                                                                                           <  2:848778/151‑1 (MQ=255)
                 ggTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCCCAAACGCCAACtttaagg                                                                                                                             >  1:773651/1‑142 (MQ=255)
                  gtgtGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTtgtg                                                                                                                        <  2:1161124/151‑1 (MQ=255)
                          aagTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACg                                                                                                                <  2:908317/151‑1 (MQ=255)
                              tttttGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCCCCCAAGCGGTAACTTCAAGGGTGTGGGAtttgacctg                                                                                                            >  2:619252/1‑144 (MQ=255)
                                   gacgacCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGatat                                                                                                        <  1:1165165/150‑1 (MQ=255)
                                   gacgacCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATg                                                                                                      <  2:480296/151‑1 (MQ=255)
                                    acgacCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGGACTCCCCTAAAAGCGAACTTTAAGGGTGGGGGGTTTTGCCTGatat                                                                                                        >  2:192697/1‑149 (MQ=255)
                                      gacCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCAATCCCCTAAACGCCAACTTTAAGGGTGTGGGATTAAGCCTGata                                                                                                         >  1:641841/1‑146 (MQ=255)
                                      gacCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAtt                                                                                                  <  1:1012868/151‑1 (MQ=255)
                                      gacCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACCCCCCTAAACGCCAACTTTAGGGGTGGGGGTTTAAGcccgg                                                                                                           >  1:526201/1‑141 (MQ=255)
                                             cccGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGTACTCCCATAACCGCAAAATTTAAGGGTATGGTATTataaccgg                                                                                                           >  1:766603/1‑130 (MQ=255)
                                                gCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGGCACTCCCCTAAACGCTAACTTAAAGGGTGTGGGATTACGCCTGGTATTATTTTACGTGcc                                                                                         >  1:344369/1‑150 (MQ=255)
                                                  tAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATGACTCCCCTAAACGCTAACTTAAGGGGTGGGGGATTAAGCCTGGTATGATTTaa                                                                                               >  2:262882/1‑142 (MQ=255)
                                                   aaCCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATg                                                                                     <  2:513270/151‑1 (MQ=255)
                                                           cAAAAGCCTTCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTActc                                                                             <  2:771070/151‑1 (MQ=255)
                                                                  cTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACCCCCCTAAGAGCTTACTTTAGGGGTGTGGGATTTTGCCTGCTATTATTTTAAGTGCCGGAGAAATATTCTCAcca                                                                      >  1:997764/1‑148 (MQ=255)
                                                                  cTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTAACCCCCCTAAACGCTAACTTAAAGGGTGTGGGATTTAGCCCGGTATGATTTTAAGTGCCGCAGAAATAATCTCAcca                                                                      >  1:1115959/1‑148 (MQ=255)
                                                                    gCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATa                                                                    <  2:1060354/150‑1 (MQ=255)
                                                                       cGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCCCTAAAAGCTAACTTAAGGGGTGTGGGGTTACGCCTGGTTTGATTTTAAGTGCCGATGAATTATTCTCCCGATaa                                                                   >  2:955792/1‑148 (MQ=255)
                                                                         tGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGACACTCCCCCAAAAGCGAACTTTAGGGGTGGGGGATTACGCCCGGTATTATTTTAAGTGCCGACGGAATAATCTCACGATaaattg                                                               >  2:441741/1‑146 (MQ=255)
                                                                             cAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGTGGTGACTCCCCACAGCGCTGAACTTATGGGGTTGGTGTTACCACTGATGTGATTTTAAATGGCGATGAAGTAGTTTCACGaaa                                                                    >  1:151485/1‑139 (MQ=255)
                                                                              aGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGACACCCCCATAAACGCTAACATAAGGGGTGTGGTATTTAACCCGATATGATTTAAAGTGCCGCTGGATTTATCTCACGCTAAATGGt                                                              >  2:741270/1‑146 (MQ=255)
                                                                              aGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCa                                                        <  2:641823/151‑1 (MQ=255)
                                                                                 ccTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCCAAAACGCTAACTTAAGGGGTGTGGGGTTTTGCCTGATATGATTTTAAGTGCCGGTGAATTATTCTCACGATAACTAGTCAGCAAtt                                                     >  2:278284/1‑151 (MQ=255)
                                                                                  cTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCCAAATTTAGGGTTGTGGTGTTTCGCCTGGTCTTCTTTTACCTGCCGATGAATTACTCTCACGGTAACTGGTCCGCaaat                                                     >  1:970402/1‑148 (MQ=21)
                                                                                   tGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATGACTCCCCTAAACGCCAAATTTAGGGGTTTGGGATTACGCCTGATATGATTTAAAATGACCGTGAATTAATCTCACAAGAAATTGTCAGCAATTCt                                                   >  1:384316/1‑151 (MQ=21)
                                                                                     ggTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTgg                                                 <  2:992057/151‑1 (MQ=255)
                                                                                       tAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCCTAAGCGCTAACTTAAGGGGTGTGGGATTTCGCCTGGTATGATTTAACGTGCCGCTGAATTAATTTCACGATAACCGGTCAGCAAATCTTGcc                                               >  1:989941/1‑151 (MQ=255)
                                                                                       tAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGAGCACTCCCCCAAAAGCTAACCTAAAGGGTGTGGGATTAAGCCTGGTATGATTTTAAGTGGCGATGAAATAATCTCACGATAAATGGTCAGCAAtt                                                     >  2:246107/1‑145 (MQ=255)
                                                                                        aaaaaTAGGGTGCGTTGAAGATATGCGAGCGCCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGcc                                               <  2:289663/150‑1 (MQ=255)
                                                                                        aaaaaTAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATGACTCCCCTAAAAGCTAAACTTAAGGGTGTGGGGTTTAGCCCGGTATTATTTTAACTGCCGGGTAAATACTCTCACGATAAATGGGTAGCAAATTTTGGcc                                               >  2:188847/1‑151 (MQ=255)
                                                                                           aaTAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCata                                           <  2:875599/151‑1 (MQ=255)
                                                                                            aTAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACCCCCCAAAACGCCAACTTAAAGGGTGGGGGATTTCGCCCGGTATTATTTTAAGTGCCGAAGAAATACTCTCACCATAAATTGGCAGCCATTCTTGGCCctat                                          >  1:1050302/1‑151 (MQ=255)
                                                                                              aGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCCTAAACGCCAACCTAAAGGGTGGGGTATTACGCCCGATATTATTTTACGTGCCGGTGAAATAATCTCCCGATAACTTGTCAGCAAATCTGGCCCCTAtt                                         >  1:985197/1‑150 (MQ=255)
                                                                                              aGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTg                                        <  1:1080852/151‑1 (MQ=255)
                                                                                              aGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCCAACTTAAGGGGTGTGGGATTACACCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTTGCCCCTAtt                                         >  1:771113/1‑150 (MQ=18)
                                                                                               gggTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACCCCCACAAACGCTAACTTAAGGGGTGTGGGGTTACGCCTGGTATTAATTTACATCCCGATGAATTAATCTCCCGCTAAATGGTCAGCAATTTTTGCCCCTAtt                                         >  1:629256/1‑149 (MQ=255)
                                                                                                  tGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACACCCCAAAAAGCCAACTTTAGGGGGGGGGGGTTTTGCCTTGTATGATTTTAACGGCCGATGAAATAATCTCACCGAAAACGGTCAGGAAATTTGGCCCCTAtt                                         >  2:620190/1‑146 (MQ=255)
                                                                                                   gCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTCACTTTAAGGGTGTGGGGTTACGCCCGGTATGATTTTACGTGCCGGTGAATTAATCTCACGATAAATGGTCAGCAATTCTGGCCCCTAtt                                         >  1:446227/1‑145 (MQ=255)
                                                                                                    cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCCCCAAACGACAACTTTAGGGGTGTGGTGTTATGCCCGGTATGATTTTACGTGGCGGTGAATTAATCTCACCATAACTGGGCAGCAATTCTGGGCCCTATTTGt                                      >  2:864765/1‑147 (MQ=255)
                                                                                                    cGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCCTAAACGCTAACTTAAGGGGTGTGGTATTAAGCCCGGTATTATTTTAAGTGCCGGTGAATTAATCTCACCAAAAATTGTCAGCAATTTTTGCCCCTATTGGTaa                                    >  1:831600/1‑149 (MQ=255)
                                                                                                        gAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCCTAAACGCCAAATTAAAGGGTGTGGGATTATGCCTGGTATGATTTTAAGTGCCGGTGAATTACTCTCACGATAAATGGGCAGCAATTTTTGCCCATATTGGTAAGccc                                >  1:94098/1‑149 (MQ=255)
                                                                                                          aGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCgaag                            <  1:637503/151‑1 (MQ=255)
                                                                                                           gATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCgaaga                           <  2:341430/151‑1 (MQ=255)
                                                                                                            atatGCGAGCACCTGTAAAGTGGCGGGGGGTACCCCCCAAAAAGCCAACTTTAAGGGTTTGGGTTTAAGCCTGGTATGGATTTAAGTTCCGAAGAAATTATCTCACGCTAAAAGGGCAGCAAATCTTGCCCCTATTGGTAAAcccccaga                           >  1:38605/1‑145 (MQ=255)
                                                                                                             tatGCGAGCACCTGTAAAGTGGCGGGGATCACCCCCCCAAACGCTAAATTTAAGGGTTGGGGTTTTAGCCCTATATGATTTAAAAGTCCCATTAAATACTCTCAAGATAACATGTCAGCCAATTTGTCCCCAATTTGTTAACCCcaagaa                          >  1:735881/1‑150 (MQ=255)
                                                                                                              atGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACt                        <  2:1006729/151‑1 (MQ=255)
                                                                                                                gCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTgg                      <  2:394302/151‑1 (MQ=255)
                                                                                                                  gAGCACCTGTAAAGTGGCGGGGGTCACTCCCCTAAAAGCCAACTTTAAGGGGGTGGGGTTAAGCCTGGTATGATTTAAACTGGCGGAGAAATAAACTCACCATAAATTGTGCACAAATCTTGCCCATAATTGGAAACCCgaagaaaag                       >  1:1085190/1‑145 (MQ=255)
                                                                                                                  gAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGAt                    <  2:1061144/151‑1 (MQ=255)
                                                                                                                  gAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGAt                    <  1:826471/151‑1 (MQ=255)
                                                                                                                     cACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACt                 <  2:947658/151‑1 (MQ=255)
                                                                                                                              aGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGt        <  2:230969/151‑1 (MQ=37)
                                                                                                                                    ggggATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGcc  >  1:457172/1‑151 (MQ=33)
                                                                                                                                                     |                                                                                                                                           
CAAAGAGCTTCTTTGATGGTGTGAAGAAGTTTTTTGACGACCTGACCCGCTAACCTCCCCAAAAGCCTGCCCGTGGGCAGGCCTGGGTAAAAATAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCC  >  NC_000913/15246‑15528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: