Read alignment evidence... | ||||||||||||
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seq id | position | ref | A | a | var freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,401,459 | 0 | T | T | C | 37.5% | 586.5 / 109.0 | 315 | D625G (GAT→GGT) | csrD | targeting factor for csrBC sRNA degradation |
Reads supporting (aligned to +/- strand): major Allele T (163/34); minor allele C (0/118); total (163/152) | ||||||||||||
Fisher's exact test for biased strand distribution p-value = 0.00e+00 | ||||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 316 total aligned reads displayed.
CTTTGTTACAAATCTCTGCCTGAGTCCAGAAAGGCTTAATGCAT‑CAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACA‑ATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTACCAGCGTCAAACCAGCCTGGTTGACGGC > NC_000913/3401209‑3401703 | ttGTTACAAATCTCTGCCTGAGTCCAGAAAGGCTTAATGCAT‑CAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACA‑ATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATc > 2:90747/1‑250 (MQ=255) ggTCCAGAAGGGCTTAATGCAT‑CAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACA‑ATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGTTTAAACCGAGTATCTTTGTAAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAacac < 1:3456480/249‑1 (MQ=255) ccgcaaGAAGGGCTTAA‑GCATCCAGCAGCATTCCTCGCCTGTTTGCACCCGCGGAAGGTCATTCAACTGCATAGGTGCTGCAACA‑ATCTGGGGAGCAGAAAAGCACACCCCAAGGAGACGCAGCGCGTATTATTTTACGTAAAAACGGATTAAACGGCAGGTAAAACCGAGTATTTTTGTGAATATTTTTTCACTTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAacac < 2:4007400/245‑1 (MQ=255) agcccAGAAAGGCTTAATGCAT‑CAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCGGCAAAA‑ATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTAAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCAAAAAAACCCCCTTGCCCGCCTGTAacac < 2:4158903/247‑1 (MQ=255) agcccAAAAAGGCTAAATGCAT‑CAGCAGCATCCCTCGCCTTTTGGCACCCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACA‑ATCTGGCGAGCAGACAAGCACACCCCCATGAGCCGCAGCGCGCATTATTCTCCGTGAAAACGGATTAAACGGAAGGTTAAACCGATTATCTTTGTAAATATTTTTTCCCGTTAGTATCAAGGGGCTGTGAGGCCGCGAAAAAATCCCCTTGCCCGCCTGTAacac < 1:5594720/247‑1 (MQ=255) gTCCAGAAAGGCTTAATGCAT‑CAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACA‑ATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAacac > 2:3455916/1‑249 (MQ=255) gTCCAGAAAGGCTTAATGCAT‑CAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACA‑ATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACcg > 1:1050657/1‑251 (MQ=255) gagcgggggtttAATGCAT‑CGGCAGCTTCCCTCGCCTTTTTGCACCCGCGTAAGGTCATCCATCTGCATATGGGCTGAAACA‑ATCTGGCGAGCAGAAAAGCACCCCCCCAGGGGAGGCGGCGCGCATTATTCTACGTGAAAACGGATAAAGGGGCAGGTTAAACCGAGTATTTTTGTGAATATTTTTTCACTTTAGTATCAAGTGGCTGTGGGGACGCGAAAAAACCCCCTTGCCCGCCTGTAacac < 1:3073190/237‑1 (MQ=255) ggCTTAATGCAT‑CAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACA‑ATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACcgcg > 2:1038975/1‑244 (MQ=255) tAATGCAC‑CAGCAGCTTTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTACAAAA‑ATCTGGCGAGCAGACAAGCACACCCCCATGAGACGCAGCGCGCATTTTTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCCCGTTAGTATCAAGTGGCTGTGAGGACGCAAAAAAACCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAggg < 2:2207392/251‑1 (MQ=255) gcagctTCCCTCGCCGTTTTGAACCCGGGAAGGGCCATCACTCTGCATAGGGGCTCCAAAA‑ACCGGGCGAGCAAACAAGCACACCCCCAGGGGCCGCGGCGCGAATTATTCTACGTAAAAACGGATAAAACGGCAGGTAAACCGGAGTATCTTTGGAAATATTTTTTCGCGTAATTATAAAGTGGGGGGGGGGAGGCAAAAAAACCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAggg < 2:1775834/241‑1 (MQ=255) tcccTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACA‑ATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTAAAAACGGATTAAACGGCGGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGGGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAggg < 1:3798821/233‑1 (MQ=255) gTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACA‑ATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAacgcac > 1:4176155/1‑250 (MQ=255) gcgTAAGGTCATTCATCTGCATATGTGCTGCAACA‑ATCTGGCGAGCAGACAAGCACCCTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAACCCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAacac < 1:1505875/200‑1 (MQ=255) gcgTAAGGTCATTCATCTGCATATGTGCTGCAACA‑ATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAacac > 1:1264961/1‑200 (MQ=255) gcgTAAGGTCATTCATCTGCATATGTGCTGCAACA‑ATCTGGCGAGCAGACAAGCACACTCCCATGAAACGCGGCGCGCATTATTCTCCGTAAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTATTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAacac < 1:4718745/200‑1 (MQ=255) gCATATGTGCTGCAACA‑ATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGcc > 2:5622886/1‑203 (MQ=255) cATATGTGCCGGCACAGACCTGGCGGGCAGACAACCCCCCCCCCATGAGACGAGGCGCGCTTTATTCTCCGTGAAACCGAATTAAACGGCAGGTTAAACCGATTATCTTTGTAAATATTTTTTCACTTTGTTATCAAGTGGCTGTGGGGACGGGAAAAAACCCCCTGGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTc < 1:682916/250‑1 (MQ=255) gtgCTGCAACA‑ATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCTCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAg > 2:1958572/1‑250 (MQ=255) tgctgcAACA‑ATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGCGGCGTAAACCTGGGt > 2:5024484/1‑236 (MQ=255) a‑aTCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTAAAAACGGATTAAACGGAAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAacac < 1:928259/166‑1 (MQ=255) gCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAac > 1:253445/1‑154 (MQ=255) gACAAGCCCCCCCCCAGGAGACGCAGCGCGCATTTTTCTACGTAAAACCGGATAAAACGGCAGGTAAACCCGAGTATCTTTGTAAATATTTTTCCACGTTATTATCAAGTGGCTGTGAGGACGCGAAAAAACCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAggg < 1:19161/168‑1 (MQ=255) gACAAGCACACTCCCATGAGACGCAGCGCGCATTATTTTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTAAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAACCCCCTTGCCCGCCTGTAac < 2:1531080/151‑1 (MQ=255) gACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGcc < 2:3794257/141‑1 (MQ=255) gACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAacac > 1:5706708/1‑153 (MQ=255) gACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAacac > 1:4953703/1‑153 (MQ=255) gACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAggg > 1:2554416/1‑168 (MQ=255) gACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAggg > 1:2726177/1‑168 (MQ=255) gACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAggg > 2:19132/1‑168 (MQ=255) gACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCAc > 1:3922778/1‑176 (MQ=255) gACAACCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTAAAAACGGATTAAACGGCAGTTTAAACCGAGTATTTTTGTAAATATTTTTTCACTTTAGTATCAAGTGGCTGTGAGGACGCAAAAAAACCCCCTTGCCCGCCTGTAacac < 2:792105/153‑1 (MQ=255) cAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACcag > 2:5572743/1‑251 (MQ=255) agccctcTCCCATGAGACGCAGCGCGTATTTTTCTACGTAAAAACGGATTAAACGGCAGGTAAACCCGATTTTCTTTGTGAATTTTTTTCCACGTTGTTATCAAGTGGCTGTGGGGCCGCAAAAAAACCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGa < 1:794955/216‑1 (MQ=255) aGCACACCCCGATGAGACGCAGCGCGAATTATTCTACGTGAAAAGGGATTAAACGGCGGGTAAACCGGGGTATCTTTGGAAATTTTTTTTCACGTTAGTATCAAGTGGCTGTGGGGACGCGAAAAAACCCCCTGGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGt < 1:1946440/195‑1 (MQ=255) gCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAg > 2:5914164/1‑222 (MQ=255) cccccaggggccGCAGCGCGCATTTTTTTACGTAAAAACGGATTAAACGGCAGGTTAACCCGATTATCTTTGTAAATATTTTTTCACGTTAGTATCAAGTGGTTGTGAGGACGCGAAAAAACCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGcc < 2:1633649/153‑1 (MQ=255) cccccATGGGACGCAGCGCGCATTATTCTACGTGAAAACGGATAAAGCGGCGGGTAAAACCGATTATTTTTGTGAATATTTTTTCACGTTATTATAAAGTGGCTGTGGGGACGCGAAAAAACCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAggg < 1:3265869/156‑1 (MQ=255) cTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCg > 2:1007602/1‑133 (MQ=255) cTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAacac > 2:1726979/1‑143 (MQ=255) cTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAAt > 1:1631291/1‑153 (MQ=255) cTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAggg > 2:3265352/1‑158 (MQ=255) cTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCCCGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTccacc > 1:5875616/1‑229 (MQ=255) cccATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAacac > 1:285559/1‑141 (MQ=255) cccATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAacac > 1:2967284/1‑141 (MQ=255) cccATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAac > 1:5075246/1‑139 (MQ=255) cccATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGc > 1:88218/1‑216 (MQ=255) cccATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTATGCCACTCGCTTCGCGAAAGCACGCCGGTGGGGGAAACCTGGGGGCTGGTCCCGGAGCAGGCTTCCACCAggg > 2:306654/1‑230 (MQ=255) cccAGGAGACGCAGCGCGTATTTTTCTACGTAAAAACGAATAAAACGGCAGTTAAAACCGAGTTTCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGGGAGGACGAGAAAAAACCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAg < 2:2344394/215‑1 (MQ=255) gagaCGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAAcc > 2:2479026/1‑192 (MQ=255) gcATTATTCTACGTGAAACCGGATTAACCGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTCCCCGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGcc < 1:4059006/145‑1 (MQ=255) cATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATg > 1:5445055/1‑251 (MQ=255) aattattTTAGGTGAAAACGGATAAAACGGCAGTTTAACCCGATTATTTTTGTAAATATTTTTTCACTTTATTATAAAGGGGTGGTGGGGACGCAAAAAAACCCCCTTCCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTg < 2:5802130/184‑1 (MQ=255) tttCTAGGTAAAAACGGATTAAGGGGCAGGTAAACCGGAGTATCTTTGTGAATATTTTTCCACGTTAGTACCAAGGGGCTGGGAGGCCGCGAAAAAACCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAAcc < 1:1484422/174‑1 (MQ=255) attCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAacac > 2:871121/1‑119 (MQ=255) attCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAac > 1:4491586/1‑117 (MQ=255) attCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAAcc > 2:1484146/1‑175 (MQ=255) cGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAac > 1:4348600/1‑111 (MQ=255) cGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTAAATATTTTTTCCCGTTATTATAAAGTGGCTGTGAGGACGCAAAAAAACCCCCTTGCCCGCCTGTAac < 2:4666623/111‑1 (MQ=255) aaaCGGATTAAACGGCAGTTAAAACCGAGTATTTTTGTAAATTTTTTTCCCCGTTAGTACAAAGGGGCTGGGAGGCCGCAAAAAAACCCCCTGGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTccac < 1:101837/193‑1 (MQ=255) ggATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAggg > 2:2543562/1‑119 (MQ=255) ggATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTCCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGag > 1:5267576/1‑250 (MQ=255) gaaTTAACCGGAAGGTAAACCCGATTATTTTTGTAAATATTTTTTCCCTTTAGTATCAAGTGGCGGGGAGGACGCAAAAAACCCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTccac < 2:2590867/187‑1 (MQ=255) gATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAacac > 2:4206900/1‑103 (MQ=255) gCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCt > 2:3649658/1‑174 (MQ=255) gtttAACCCGAGTATCTTTGTAAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGCCGCAAAAAACCCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGaa < 2:1411507/124‑1 (MQ=255) ggTTAACCCGAGTATTTTTGTGAATTTTTTTCCAGGTTATTATCAAGGGGCTGGGGGAACGCAAAAAAACCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAAcc < 1:1106051/147‑1 (MQ=255) ggTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAac < 1:516378/89‑1 (MQ=255) ggTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAggg > 1:3596612/1‑106 (MQ=255) ggTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTc > 2:4395044/1‑108 (MQ=255) ggTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGc > 1:4279352/1‑166 (MQ=255) aCCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCac > 2:4911567/1‑249 (MQ=255) gAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAAcc > 1:2286026/1‑138 (MQ=255) gAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTACCTc > 1:2396192/1‑245 (MQ=255) gAGTATCTTTGTAAATATTTTTTCCCTTTAGTACAAGGTGGCGGGGAGAACGCAAAAAACCCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTtctc < 2:5367274/194‑1 (MQ=255) atgtttCTTGGTAAATTTTTTTCCAGGTAATTACCAGGTGGTGGGGAGGCCGAAAAAAACCCCCCTGCCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACAt < 2:5241854/245‑1 (MQ=255) ttATTTTTGTAAATTTTTTTTCCCTTTATTATCAAGTGGTTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAacac < 2:2732072/79‑1 (MQ=255) gTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAg > 1:1717189/1‑154 (MQ=255) ttttttGTAAATTTTTTCTCACTTTGGTACAAAGTGGCTGGGGGGACGCAAAAAACCCCCCTGCCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGt < 2:1111620/248‑1 (MQ=255) tgtgAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCg > 2:2071905/1‑123 (MQ=255) tgtgAATATTTTTCCACGTTAGTATCAAGTGGCTGTGAGGCCGCGAAAAAACCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCg < 1:2072277/123‑1 (MQ=255) taaaTTTTTTTTCCGTTTAGTATAAAGTGGCTGGGAGGACGCAAAAAACCCCCCTGGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGa < 1:4145192/249‑1 (MQ=255) tatTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAg > 2:3894121/1‑224 (MQ=255) ttttttCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGGGCTGGTc > 1:1776119/1‑133 (MQ=255) cGTTAGTATAAGGGGGCTGTGAGGACGCGAAAAAACCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCt < 1:3695680/210‑1 (MQ=255) cGTTAGTACAAAGTGGCTGGGAGGACGGGAAAAAACCCCCTGGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTccacc < 1:4587215/143‑1 (MQ=255) attATCAAGTGGCTGTGGGGCCGCGAAAAACCCCCCTTCCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTc < 2:535430/76‑1 (MQ=255) aGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTc > 1:535539/1‑78 (MQ=255) aGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTACCa > 2:5076683/1‑251 (MQ=255) aGTATCAAGGGGCTGTGAGGCCGCAAAAAAACCCCCTTCCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTccacc < 2:4112595/139‑1 (MQ=255) gTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGt > 2:4521921/1‑98 (MQ=255) ggCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAAc > 1:1003356/1‑98 (MQ=255) gCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCt > 2:666954/1‑122 (MQ=255) gCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGAt > 2:5479805/1‑189 (MQ=255) gCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGt > 2:1071251/1‑200 (MQ=255) gCTGGGAGGCCGCAAAAAACCCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACAt < 1:5959992/210‑1 (MQ=255) tgtgAGGACGCGAAAAACCCCCCTTCCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTccacc < 2:2940720/126‑1 (MQ=255) gtgAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGc > 2:42908/1‑66 (MQ=255) cgAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGc > 2:3520525/1‑105 (MQ=255) aaaacaCCCCCTTGCCCGCCTGTACCACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTACCAGCGTCAAACCAGCCTGGTTGACGGc < 1:5508085/251‑1 (MQ=255) | CTTTGTTACAAATCTCTGCCTGAGTCCAGAAAGGCTTAATGCAT‑CAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACA‑ATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTACCAGCGTCAAACCAGCCTGGTTGACGGC > NC_000913/3401209‑3401703 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |