Read alignment evidence... | ||||||||||||
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seq id | position | ref | A | a | var freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,457,105 | 0 | A | A | G | 37.5% | 608.1 / 139.2 | 342 | I441V (ATC→GTC) | mpl | UDP‑N‑acetylmuramate:L‑alanyl‑gamma‑D‑glutamyl‑ meso‑diaminopimelate ligase |
Reads supporting (aligned to +/- strand): major Allele A (13/200); minor allele G (128/0); total (142/200) | ||||||||||||
Fisher's exact test for biased strand distribution p-value = 0.00e+00 | ||||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 344 total aligned reads displayed.
CTCGAATACCATGAAAATGGGGATCTGCAAAGACGATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAA > NC_000913/4456867‑4457352 | aaaaTGGGGATCTGCAAAGACGATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCt < 1:1007922/251‑1 (MQ=255) aTCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGGTTTGGTGGGGGGCCTACGAAAATGCT‑GGAGGGGGGGGCGAGGGAGGCgggggcggcg > 1:5199000/1‑243 (MQ=255) tCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAAc < 2:2941789/205‑1 (MQ=255) tCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGAt < 2:466107/213‑1 (MQ=255) tCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGGTTTTGGGGGGTCCCACAGAAAATGCT‑GGGTGGGGGTGGGGAGAAGGGGGGAGGcgcggcggaaattgg > 1:494165/1‑240 (MQ=255) tCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGcc < 2:2129793/251‑1 (MQ=255) cTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGGTTTTGTGGGGGCCATCAGAAAAAGGT‑GGGAGGGGGGGGGGAGAAAGGGGGAGGCGCGCAGGAAATTGGGCCTT‑GCCCGAAATAggaaagtg > 1:1209645/1‑244 (MQ=255) gcgcATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTc < 1:1710426/210‑1 (MQ=255) ttCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGcc < 2:4960688/207‑1 (MQ=255) gaagtggcagaagCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGGTTTTGGGGGGTCCCCCAGGAACCGCT‑GGGTGGGGCGGCGGAGAAGGGGGGAgg > 1:531252/1‑172 (MQ=255) gaagtggcagaagCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGGTTTGGGGGGGGCCATCAGAAAATGCT‑GGGGGGGGTGGCGGAGAAGGCGGGAGGCGCGCA‑GGAAATCGGGCCTAGCCAGATATAGTAAGCGGAgggc > 1:2474504/1‑214 (MQ=255) gcagaagCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGGGCCCTCAGAAAATGCT‑GGATGGGCTGGCGGAGAAGGGGGGAGACGCGCA‑GTAAATTGGCCTTGTCCAGGTAAAGTAAGCGGAGGCCGGGTAAggg > 1:4014699/1‑218 (MQ=255) gcagaagCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAg < 1:1284620/207‑1 (MQ=255) agCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAAc < 1:3089418/131‑1 (MQ=255) gCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATc < 2:3894906/120‑1 (MQ=255) cttGCGTTTAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATg < 1:5547856/249‑1 (MQ=255) gCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGGGGGATCCCTTAGAAAc > 2:1759698/1‑126 (MQ=255) gCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGGTTTTGTGGGGGCCATc > 2:1261874/1‑120 (MQ=255) cGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAGCCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGAt < 1:1675525/246‑1 (MQ=255) cAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTc < 1:1359966/165‑1 (MQ=255) aGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGat < 1:5491918/178‑1 (MQ=255) acacTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGCGGGTTTTGGGGGGGTcctccgaaaat > 2:5576420/1‑105 (MQ=255) acacTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAAc < 2:4312476/113‑1 (MQ=255) acacTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGcc < 2:1092497/161‑1 (MQ=255) cacTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTTGTGGGGTCCCCCCGAAAATGCTGGGTTGGGCGGGGGAAAAAGGGGGAGGCC‑CGCC‑GGAAATTGGCCCTTGCCAGGAATAGTa > 1:2324136/1‑176 (MQ=255) cacTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTa < 2:2323728/176‑1 (MQ=255) ggAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGc < 2:3220643/181‑1 (MQ=255) gAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGGTTTGGGGGGGTCCCTCAGAAAATGCC‑GGGTGGGGGGGGGGAGAAGGGGGGAGGCGCGCA‑GGAATTCTGCCCTAAGCCGAAAAAGTATTCGGAGGCCGGGTAAAGGGGTCACGCCGCAACCGGCATTTGTGCCT‑AATGGCTGGTGCGACGCCTg > 2:5967433/1‑238 (MQ=255) gAGGGGCGATGTGGATACGCTGGCAGATAGGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCTTGATGCGTCTTATc < 2:1608671/250‑1 (MQ=255) aGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCTTGATGCGTCTTATCa < 2:5243528/250‑1 (MQ=255) gtgGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTTGGGGGGGGCATCAGAAAATGCT‑GGGTGGGGCGGCGGAGAAAGCGGGAGCCGCCCC‑GGAAATTGGCCCTAGCCAGACTAAGTATGCgg > 2:1989402/1‑165 (MQ=255) gtgGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTa < 2:4991105/161‑1 (MQ=255) gtgGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTa < 2:1839883/161‑1 (MQ=255) gtgGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGGGGGGTCCATCAGAAAATGCT‑GGATGGGCTGGGGAAGAAAGCGGGAGGCGCGCA‑GGAAATCGGCCTTAGCCCGATATAGTa > 1:4991956/1‑161 (MQ=255) gtgGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGGTTTTGGGGGGTCCCTCAGAAACTGCT‑GGATGGGGTGGCGGAGAAAGCGGGAGCCGCGCA‑GGAATTCGGCCCTAGCCCGATATAGTa > 1:1840220/1‑161 (MQ=255) tgGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTATGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAgg < 2:3363186/250‑1 (MQ=255) ggATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCTTGATGCGTCt < 1:1054374/234‑1 (MQ=255) ggATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGGTTTGGTGGGGTCCCTCAGAAAATGCT‑GGGTGGGGGGGGGGAGAAAGGGGGAGCCGCGCC‑GTAAATTGGCCCTAGCCCGATATAGTAAGCGTAGGGCGGGGAAGGGGGTCACGCCGCACCCGGCCATTTAGCATAAGTG‑CTGATGCGACGCTTGAttgggcc > 2:1054166/1‑228 (MQ=255) gATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGGGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTg < 1:1555633/250‑1 (MQ=255) gccagggCAGATATGGTGGTGAAATCCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCAc < 1:2234615/245‑1 (MQ=255) cTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGGTTTTGTGGGGGCCCTCAGAAAATGCT‑GGGTGGGGTGGCGAAGAAAGCGGGAGACCCGCA‑GGAATTCGGCCTTTTCCAGATATAGTATAGGGAGGCCGGATAAGGGGTTTCCGCCGCATCCCGCCTTTTAGCAT‑AGTGGCTGATGCGGCGCTTGATGGGGCtttttcagcctccagcggcgccgca > 2:4730209/1‑228 (MQ=255) ggCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTTGTGGGGTCCCTCAGAAAATGCT‑GGGTGGGGTGGGGGAGAAGGCGGAAGCCGCGCA‑GGAATTTGGCCCTAGCCAGAAATAATATGGGTAGGGCGGGTAAGGCGGTTACGCCCCATCCCGCATTTTGGCAT‑AGTGCCTGGTGGGACGCTTGGGTGGTCTTATCCGGGCTACAgggggac > 2:2234210/1‑240 (MQ=255) cAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGGTCCATCAGAAAACGCT‑GGGTGGGGCGGGGGAGAAAGCGGGAGCCGCGCAGGAAATTGGCCCTTAG‑CAGGTATAg > 1:4672719/1‑146 (MQ=255) cAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCgaagaa < 2:2350821/106‑1 (MQ=255) cAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTaa < 1:3472686/125‑1 (MQ=255) cAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTa < 1:4422220/148‑1 (MQ=255) cAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGGGGGAGCCATCAGAAAACGCT‑GGATggggt > 1:2114814/1‑95 (MQ=255) cAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGGTTTTGGGGGGGCCATCAAAAAATGCT‑GGGTGGGGGGGGGGAAAAGGGGGGAGGCGCGCA‑GGAAATTGGCCCTTGCCAGATATAgga > 2:4421453/1‑146 (MQ=255) cAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGGTTTGGGGGGGTCCATCAGAAAATGGT‑GGGTGGGGTGGGgaagaa > 1:2351228/1‑106 (MQ=255) atatGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGGTCCATCAGAAAATGCT‑GGGTGGGGTGGGGGAGAAGGGGGGAGCCGCGCA‑GGAAATTGGCCTTAGCCCGAAATAGTa > 1:3184425/1‑145 (MQ=255) atatGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGc < 1:3326657/209‑1 (MQ=255) atatGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGc < 1:5968436/250‑1 (MQ=255) tgggaaaaaCCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTGGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCa < 2:2795283/245‑1 (MQ=255) ggtgAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTTGGGGGGTCCATCAGAAAATGCT‑GGATGGGCTGGGGGAGAAGGCGGGAGCCGCGCA‑GCAATTTGGCCCTTGCCAGATATAGTATGCgg > 2:3583183/1‑142 (MQ=255) ggtgAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGt < 1:3583751/143‑1 (MQ=255) ccGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGGGGGGTCCCTCAGAAACTGCT‑GGGTGGGGTGGCGGAGAAGGGGGGAGCCGCGCC‑GGAAATCGGCCCTTGCCCGATATAGTa > 1:2715498/1‑130 (MQ=255) gCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTTGTGGGGGCCATCAGAAAATGCT‑GGGTGGGGTGGCGAAGAAGGCGGGAGCCGCGCC‑GGAATTCGGCCTTAGCCAGATATAGTa > 2:4270803/1‑128 (MQ=255) gCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCTTGATg < 2:3780091/198‑1 (MQ=255) gCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCg < 1:4273423/225‑1 (MQ=255) cTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATcaac < 2:1321067/251‑1 (MQ=255) gCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTTGGGGGGGCCCTCAGAAAATTCT‑GGGTGGGCGGGCGAAAAAAGCGGGAGCCGCGCA‑GTaaattgg > 2:4030697/1‑100 (MQ=255) gCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGGTCCATCAGAAAATGCT‑GGGTGGGGTGGGGGAGAAGGGGGGAGCCGCGCA‑GGAAATCGGGCTTAGCCAGATATAGGATGCGGAGGGCGGGTAAggg > 1:2580741/1‑141 (MQ=255) gCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTc < 2:1515039/103‑1 (MQ=255) gCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCgg < 1:4031357/105‑1 (MQ=255) gCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGcc < 1:5119024/113‑1 (MQ=255) gCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑Ag < 2:4368571/172‑1 (MQ=255) gCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCTTGATGCGTCTTATCa < 2:3959179/203‑1 (MQ=255) gCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAgg < 1:3892482/213‑1 (MQ=255) gCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGGGGGGTCCCTCAGAAAATGCT‑GGATGGGCTGGCGAAGAAGGCGGGAGCCGCGCA‑GGAATTTgggccttgcc > 2:5118151/1‑105 (MQ=255) gCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGGGGGGTCCATCAGAAACTGCT‑GGGTGGGCTGGGGAAGAAGGCGGGAGCCGCGCA‑GTAATTTTGGCTTAGCCCGATATAGGATGCGTAGGCCGGGTAAGGGGGTCCCGCCGCATCCGGGCTTTGAGCAT‑aa > 1:4369333/1‑171 (MQ=255) gCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGGTTTTGGGGGGGCCATCAAAAAATGCT‑GGGTGGGGGGGGGGAGAAAGGGGGAGGCGCGCA‑GGAAATTGGCCCTTGCCCGATATAATATGCGGAGGGCGGGGAAAGGGGTTACGCCCCATCCCGGATTTTAGGAT‑AGGGGCCGGTGCGaaggtttagggggcttttc > 2:2565336/1‑184 (MQ=255) aCCATATTCTGGTGATGAGCAACGGC‑GGTTTTTGTGGGGTCCATCAAAAAATGCT‑GGGTGGGGTGGGGGAGAAAGGGGGAGGCGCGCA‑GGAATTCGGGCTTTGCCAGATATAgga > 2:339133/1‑113 (MQ=255) aCCATATTCTGGTGATGAGCAACGGC‑GGTTTTTGGGGGGTCCCTCAGAAACTGCT‑GGGTGGGGTGGGGAAGAAGGGGGGAGCCGCGCA‑GGAATTTGGCCTTTGCCCGATATAGTATgggga > 2:5597437/1‑117 (MQ=255) aCCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGGTCCATCAGAAAATGCT‑GGATGGGCTGGCGGAGAAGGCGGGAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCg > 2:3124081/1‑119 (MQ=255) aCCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAAc < 2:2624136/51‑1 (MQ=255) aCCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTa < 1:5598362/121‑1 (MQ=255) aCCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGcc < 2:4545177/125‑1 (MQ=255) aCCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCTTGATGc < 1:3829682/186‑1 (MQ=255) aCCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGGGGGGTCCATCAGAAAATGCT‑GGATGGGGTGGCGGAGAAAGCGGAAGGCGCGCA‑GGAATTCGGCCTTAGCCAGATATAGGATGCGTAgggc > 1:4545963/1‑123 (MQ=255) aCCATATTCTGGTGAAGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCG‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAt < 1:3365073/162‑1 (MQ=255) atatTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGGTCCATCAGAAAATGCT‑GGGTGGGGTGGCGGAGAAAGGGGGAGCCGCGCA‑GGAATTTGGCCTTAGCCCGATATAgga > 2:3729496/1‑110 (MQ=255) atatTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTa < 1:3730101/112‑1 (MQ=255) atatTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGc < 1:1950181/149‑1 (MQ=255) atatTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCa < 2:5749965/158‑1 (MQ=255) atatTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATAAGAAAATGCT‑GGGTGGGCTGGCGAAAAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTTGCCAGGTATAGTATGGGTAGGCCGGAGAAGGCGTTCACGCCGCATCCAGCCTTTGTGCa > 1:5750908/1‑158 (MQ=255) atTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTa < 1:2924303/110‑1 (MQ=255) atTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATc < 2:2416252/211‑1 (MQ=255) atTCTGGTGATGAGCAACGGC‑GGCTTTGGTGGGGTCCCTCCGAAACCGCT‑GGCTGGGCTGGCGGAGAAAGCGGGAGCCGCGCC‑GTAATTCCGCCCTTGCCCGATATTGTATGCGTAGGCCGGGTAAGGCGGTCACGCCGCCTCCGGCATTTGAGCAT‑AGAGCCTGATGCGACGCCTGCTTCGTCTTTTCAGGCCTACAGGGGCACCGTaac > 1:2416669/1‑209 (MQ=255) ttCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGGTCCCTCCGAAACTGCT‑GGCTGGGCTGGCGAAGAAAGCGGGAGCCGCGCA‑GGAATTCGGCCTTAGCCCGATATAGTATGCGTAGGCCGGGTAAGGGGGTTACGCCGCCTCCGGCATTTTTGCAT‑AAGGCCCGACGGGCCCCTTGATGCGTCTTTTTAGGCCTTCCGGGGCCCCCTCTCCCGCCAACCacaccc > 1:4198558/1‑223 (MQ=255) ttCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGGTCCATCAGAAACTGCT‑GGATGGGGTGGCGGAGAAAGGGGGAGCCGCGCA‑GTAAATTGGCCCTAGCCAGATATAGTATGCGGAGGCCGGGGAAGGGGGTCCCGCCGCCTCCGGCAATTTAGCAT‑AGTGCCCGGTGCGACGcc > 2:583096/1‑173 (MQ=255) ttCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGt < 1:830154/108‑1 (MQ=255) ttCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGt < 2:5294615/114‑1 (MQ=255) ttCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCt < 1:583206/174‑1 (MQ=255) ttCTGGTGATGAGCAACGGC‑GGGTTTGGGGGGGGTCATAAAAAAATTGT‑GGGGGGGCAGGGGAAGAAGGGGGAATCAGCGCC‑GAAATTTGGGCTTAAccccgcaaagac > 2:829997/1‑99 (MQ=255) cTGGTGATGAGCAACGGC‑GGTTTTGGTGGGGTCCATCAGAAAATGCT‑GGGTGGGCTGGGGAAGAAGGGGGGAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGGATGCGTAGGCCGGGTAAGGGGGTCACGCCGCCTCCGGCATTTTAGCAT‑AGTGCCTGAt > 1:4105686/1‑164 (MQ=255) cTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGAt < 2:4104988/164‑1 (MQ=255) gTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCg < 1:1760561/124‑1 (MQ=255) ggtggGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAgg < 2:1907562/173‑1 (MQ=255) ggtggGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAgg > 2:1453253/1‑173 (MQ=255) ggtggGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAgg < 1:1453528/173‑1 (MQ=255) | CTCGAATACCATGAAAATGGGGATCTGCAAAGACGATCTGGCACCTTCATTAGGTCGTGCCGATGAAGTCTTCCTGCTGCAACCGGCGCATATTCCGTGGCAGGTGGCAGAAGTGGCAGAAGCCTGCGTTCAGCCTGCACACTGGAGTGGCGATGTGGATACGCTGGCAGATATGGTGGTGAAAACCGCTCAGCCTGGCGACCATATTCTGGTGATGAGCAACGGC‑GGTTTTGGTGGGATCCATCAGAAACTGCT‑GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCA‑GTAATTCGGCCTTAGCCAGATATAGTATGCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTTGAGCAT‑AGTGCCTGATGCGACGCTTGATGCGTCTTATCAGGCCTACAGGTGCACCGTATCCGGCAAACCATACTCACATCAACAACGAAAATTACCCTTCGTTCTCCGCTAACTCGCGCAGATACTGGAA > NC_000913/4456867‑4457352 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |