Read alignment evidence... | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | A | a | var freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,074,044 | 0 | T | T | C | 36.9% | 239.5 / 18.7 | 123 | S836P (TCC→CCC) | flu | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
Reads supporting (aligned to +/- strand): major Allele T (37/40); minor allele C (0/45); total (37/86) | ||||||||||||
Fisher's exact test for biased strand distribution p-value = 5.42e-10 | ||||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 136 total aligned reads displayed.
CGATAACAATGGCGGTATTGCCCGTGGGGCCACGCCGGAAAGCAGCGGCAGCTATGGATTCGTCCGTCTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGG‑GTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGT‑CC‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCG > NC_000913/2073803‑2074294 | atcaggggctgtattGGTTTCTTCCGTGTGGGGGGTGACCTGAGGAGACCAGGGGTGCGCGGTTTTTCTTGGCCCGGGGGG‑GTATATGGTGCGGCGGGCCTTTCTTCCGTGGATGTAAAGGATGAGGCCGCCCCCCGTGCCGGCCCGGG‑CG‑GGGATGGGGCGGGCGGCGGGGGCGGATCCCAAATGCGGGACCACCCGCCCCCC‑GGCATGTGGG‑CGAACTTTGGGGCGGGGGGAACCCGCCACAGCATGaa < 2:2105648/237‑1 (MQ=255) gCTATGGATTCGTCCGTCTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGG‑GTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGT‑CC‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtcctc < 2:3757729/193‑1 (MQ=255) gccgtgTGGGGGGTGACGTGAGGAGAGCAGAGGTTGCGGGTATGTCGGTGCCCGGGGGG‑GTATGTGGGGCTGCTGGCCATTCTCCCGTGGATGTAAAGGAGGAGGCCGCCCCCCGGGCCGGCGGGGG‑CG‑GGGGTGAGGCCGGCGGCCGGGGGGAATCCTTGAATCGGGAACACCCGCCCCCC‑GGGGGGGGGG‑CTGAAATTGGGGCAAAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGa < 2:2314749/249‑1 (MQ=255) tcgggggggTGACTTGAGGAGAACGGGGGTTGCCGTTTGGTCGGGGCCCGGGGGG‑GTATTGGGTGCTGCGGCCCTTTCTTCGTTGGATTTAAGGGAGGATGAGGGCCCCGGGGCCGGCAGGGT‑CG‑GGGAGGGGGCGGGCAGCCGGGGGGGATCCCTGAATCGGGTACACACGCCCCCC‑GGCTTGGGGG‑CTGACATTGGGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTc < 2:3514839/244‑1 (MQ=255) tcTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGG‑GTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGT‑CC‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAAcc < 2:1211599/211‑1 (MQ=255) gACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGG‑GTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGT‑CC‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGc < 1:665688/191‑1 (MQ=255) gatgaGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGG‑GTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGT‑CC‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGG‑CTGACa < 2:2347151/179‑1 (MQ=255) gaACAGAGGTTGCCGGTATGTCTGTGACCGCGGGG‑GTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGT‑CC‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGG‑CTGACAt < 2:3213947/175‑1 (MQ=255) gaACAGAGGTTGCCGGTATGTCTGTGACCGCGGGG‑GTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTACCGGCACGGT‑CC‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGcc < 2:2640891/162‑1 (MQ=255) ggTTGCCGGTATGTCTGTGACCGCGGGG‑GTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGT‑CC‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTgg < 2:5839547/160‑1 (MQ=255) gtggcgggTATGT‑TGTGGCCGGGGGGTGTATAGGGGGCTGCGGCCCTTTCTTCCGTGGTGGGAAGGGAGGATGACGGCGCCCGGGCCGGCACGGT‑CG‑GGGAGGAGGCCGGAGGCGTGGGGGGATCCCTGAATCGGGTCCACACGCCCTCG‑GGCTTGGGGG‑CTGACTTTGGGCCACGGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCAGGGCTGGGGCTGGCTGGGCt < 1:5825424/244‑1 (MQ=255) ttCTGTGCCCGGGGGG‑TTATGTGGTGCTGCTGGCCTTTCTCCCGTTGTTGTAAAGGATGATGACGGCCCCCGTGCCGGCCCGGT‑CG‑GGGATGACGCCGGCAGCGGGGGCGGATCCCTGAATCGGGTACACCCGCCCCCC‑GGCCTGGGGG‑CTGACTTTGTGGCACAGGGAACCCGCCACAGCATGAAAg < 2:1427019/187‑1 (MQ=255) cTGTGACCGCGGGG‑GTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGT‑CC‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGG‑CTGACAt < 1:2284076/154‑1 (MQ=255) ggg‑gTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGT‑CT‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCCGGTACACACGTCCTCC‑GGCCTGTGGG‑CTGACACTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGCCATCGGACAACAACGACTTCCGCGCCCGGGGCTGGGGCTGGCCGGGGTCACCCGCAACCGGTCTGcccccttg > 1:1859298/1‑246 (MQ=255) ggg‑gTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGT‑CC‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGcc < 2:4444724/130‑1 (MQ=255) ggg‑gTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGT‑CC‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCtgt < 2:1529654/133‑1 (MQ=255) ggg‑gTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGT‑CC‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGcac < 1:4318651/151‑1 (MQ=255) ggggtagtgggggctgggggcttttcttcTGTTGATGTAAGGGATGATGACGGC‑CCCGGGGCGGGCGGGT‑CCGGGGATGAGGCGGGCGGCTGGGGCGGATACCTGAATCGGGTACACACGTCCCCC‑GGCCTGGGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAAcc < 2:3309442/214‑1 (MQ=255) ggttatggggTGCGCCTGGCCATTCTTCGTTTGATGTAAGGGATGAGGCGGGCCCCCGGGCGGGCACGGT‑CG‑GGGAGGAGGCGGGCAGCCGGGGCGGATCCCTGAATCGGGTACACCCGTCCCCC‑GGCGTGGGGG‑CTGACATTGGGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAg < 1:1234415/242‑1 (MQ=255) ttattTGGTGCTGCGGGCCTTTTTTCCGTTGATGTAAAGGATGATGAGGGCTCCCGTGCGGGCCCGGT‑CG‑GGGAGGATGCCGGCAGCCGGGGCGGATACCTGAATCGGGTACACCCGTCCCCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGaa < 1:3732293/169‑1 (MQ=255) ttatggggTGCGGCTGGCTATTCTTCCTTTGTTGTTAAGGATGATGACGCCTCCGGTGCCGGCCCGGC‑CC‑GGTATGATGCGGGGGGCGGGGGGGGATCCCGAAATCTGGAACCCCCGCCCCCG‑GGCGTGGGGG‑CTGACATGGGGACAGGGGGAGCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTAt < 1:4957282/245‑1 (MQ=255) gtGGTGCTGCTGCCCTTTCTCCGGTTGATGTTAGGGATGAGGCGGGCCCCGGTGCGGGC‑CGGTGCG‑GGGATGATCCGGGCAGCGGGGGGGGACCCCTGAATCTGGTACACACGCCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACGGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAAcc < 1:3348185/229‑1 (MQ=255) gtgtcgcgggCCATTCTTCCGTTTGTTTTAAGGGTGGGGGCGGCCCCCCGGCCGGCACGGG‑CCGGGGATGGGCCGGGCGGCCGGGGGGGACCCCTGAATCGGGTCCACGCGTCCCCG‑GGCTGGGGGG‑CTAACTTTGGGGCACGGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTg < 2:4054300/242‑1 (MQ=255) gTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGT‑CC‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTgg < 2:3514831/125‑1 (MQ=255) ttctccCGTTGATGTTAAGGATGATGACGGCCCCCGTGCCGGCACGGT‑CC‑GGGATGATCCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGc < 1:1361945/139‑1 (MQ=255) ccGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGT‑CC‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAAc < 1:881445/130‑1 (MQ=255) aTGTTAGGGATGAGGCCGGCCCCCGTGCCGGCCCGGT‑CC‑GGGAGGAGGCCGGCAGCTGGGGCGGATCCCTGAATCGGGTACACCCCTCCCCC‑GGCCTGGGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAg < 2:2917387/141‑1 (MQ=255) gtgtgatggCGGCCCCCGGACCGGCGCGGG‑CC‑GGGATGGGGGCGGGGGCGGGGGGGGATACAGGATGCGGGTCCACAGGCCCGCG‑GGCCTGGGGG‑CGGGCGTTGGGGCAGGGGGACCCCGCCACAGCATGAAAGCGTCGTCGGACGATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGtat < 1:1967197/247‑1 (MQ=255) gatggtGCCGGCCCCGGTGCCGGCGCGGT‑CC‑GGGATGATGCCGGCGGCGTGGGGGGATCCCTGATTCTGGTCCACACGCCCCCG‑GGCCTGGGGG‑CTGACATGGGGGCAGGGGAAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCt < 1:48167/230‑1 (MQ=255) gaggatgaCGGCCCCCGTCCGGGCGGGGC‑CC‑GGGAGGATCCCGGCAGCCGGGGCGGATCCCTGAATCTGGTACACACGCCCTCC‑GGCCTGGGGG‑CTGACATGGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGAc < 1:3839216/141‑1 (MQ=255) ccccgcaccGTGCCGCCCGGGC‑CG‑GGGAGGATGCCGGCGGCCGGGGCGGATCCCTGAATCTGGTCCACCCTCCCTCC‑GGCCTGTGGG‑TTGACTTTGTGCCACGGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTAt < 1:5476342/198‑1 (MQ=255) cGGCTCCCGTGCCGGCACGGT‑CC‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGcc < 2:608475/113‑1 (MQ=255) gTGCCGGCAGGGT‑CG‑GGGAGGAGGCCGGCAGCCGGGGGGGATCCCTGAATCTGGAACACACGTCCTCC‑GGCCTGGGGG‑CTGACATTGGGGCACGGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCggggctggggc < 1:4691749/158‑1 (MQ=255) tgcggccccGGT‑CC‑GGGATGGCGCCGGCGCCCTGGGGGGATCCCTAACTCT‑GTCCCCCCCTCCCCCGGGCGTGTGGG‑CTGACTTTGTGGCCCGGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGc < 1:161655/204‑1 (MQ=255) cgggcac‑GGGATGGGGCGGGCCGCGTGGGGGGATCCCTAAATTGGGCCCCCCCGTCCCCC‑GGGTGGTGGG‑TGGAATTTGGGGCACGGGCAACCCGCCACAGCATGAAAGCGTCATCGGACAATAGCGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATAc < 1:989860/221‑1 (MQ=255) gT‑CG‑GGGATGATGCGGGCACCTGGGGCGTTTCCTTGATTCTGGCACCCCCGCCCTCC‑GGCCTGTGGG‑TTGACATTGTGGCACGGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATg < 1:5936287/201‑1 (MQ=255) gT‑CG‑GGGATGAGGCCGGCGGCCGGGGGGAATCCCTGATTTTGGTCCACCCCCCCCCC‑GGCTTGTGGG‑CTAAATTTGTGGCACGGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGccc < 1:3272829/177‑1 (MQ=255) gT‑CC‑GGGATGATGCCGGCAGCGGGGGGGGATCCCTGAATCTGGTACACCCGCCCCCC‑GGCCTGGGGG‑CTAACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGggctggct < 1:5497714/152‑1 (MQ=255) gT‑CC‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTgg < 1:371448/66‑1 (MQ=255) gT‑CC‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTgg < 1:5208722/66‑1 (MQ=255) gT‑CC‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGG‑CTGACAt < 2:3449961/74‑1 (MQ=255) gT‑CC‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGc < 2:5779751/80‑1 (MQ=255) gT‑CC‑GGGAGGATGCCGGCGGCCGGGGGGGTTCCCTGAATTTGGTACACCCGTCCTCC‑GCCCTGTGGG‑CTGACATTGTGGCACGGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAg < 1:1359579/182‑1 (MQ=255) gccc‑GGGATGATGCCGGCGGCGTGGGCGGATCCCTGAATCTGGTACACCCTCCCTCC‑GGCCTGGGGG‑CTGACTTTGTGGCACGGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAAcc < 2:2498860/166‑1 (MQ=255) gccc‑GGGAGGATGCCGGCAGCTGGGGCGGATCCCTAAATCGGGCACCCCCGCCCCCC‑GGCCTGGGGG‑CTGACATTGTGGCACAGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTAt < 2:1060159/183‑1 (MQ=255) gccc‑GGGAGGATGCCGGCAGCCTGGGCGGATCCCTGAATCTGGTCCCCCCGTCCCCC‑GGCCTGTGGG‑CTGACATTGTGGCACGGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCggggc < 1:1158340/139‑1 (MQ=255) gccggggatgggcccGGCGGCCGGGGGGGAGCCCTGAATCGGGTACACCCCCCCCCC‑GGCCTGGGGG‑CGGACTTTGGGGCGCGGGGCACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGc < 2:4904347/189‑1 (MQ=255) gccggggATGATGCGGGCAGCCGGGGGGGATCCCTAAATCTGGCACACCCGCCCCCC‑GGCGTGGGGG‑CTGACTTTGGGGCACGGGAACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGggctggct < 2:483202/148‑1 (MQ=255) gccggggAGGATCCGGGCGGCTGGGGCGGATCCCTGAATCGGGTACACCCCCCCTCC‑GGCCTGGGGG‑CTGACATTGTGGCACAGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAAcc < 2:4328287/164‑1 (MQ=255) gccgggaaggggccgggCAGCCGGGGCGGATCCCTAAATCTGGTACCCCCGTCCCCC‑GCCCGGGGGG‑CTGACATGGGGGCACAGGAAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAAcc < 2:5003428/153‑1 (MQ=255) gttgtgtgtaggggcgggcccggggCGGACCCCTAAATCGGGTCCACCCGCCCCCC‑GGCCTGGGGG‑CGAATATTGGGCCACGGGAACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACgg < 1:3401378/228‑1 (MQ=255) ggATGATGCCGGCAGCCGGGGCGGATCCCTAAATCTGGTACCCCCGCCCCCC‑GGCCTGTGGG‑CTGACTTTGTGGCACGGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGc < 2:5045278/197‑1 (MQ=255) gatggtGCCGGCAGCCGGGGGGGATCCCTAATTCTGGTCCACACGTCCCCC‑GGCTTGTGGG‑CTGACATTGTGGCACAGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTg < 1:1082371/156‑1 (MQ=255) tggaggcGGGAGGCTGGGGGGATACCTGAAACCGGTAACCCCGCCCCCC‑GGGTGGGGGGTCAGAAATGGGGGCACGGGAACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGAc < 1:5241073/245‑1 (MQ=255) gCCGGCAGCGTGGGCGGATCCTGGAATCTGTCACACCCGTCCCCC‑GGCGGGTGGG‑CTGACATTGGGGCAAGGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGAc < 2:5082792/246‑1 (MQ=255) ggcgggggggATCCCTGAATGTGGTACACACGTCCTCG‑GGCGTGGGGG‑TTGACTTTGGGGCAAAGGAAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCt < 1:3732420/134‑1 (MQ=255) gcgggggCGGATCCCGAAATCGGGTACACCCGCCCCCC‑GGCCTGGGGG‑CTGAAATTGGGGCACAGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCggggctgggg < 1:4235925/123‑1 (MQ=255) gCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGcac < 2:3157986/63‑1 (MQ=255) gCCGGGGCGGATCCCTGAATCTGGTACACCCGCCCCCC‑GGCCTGGGGG‑CTGACATTGGGGCACAGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTAt < 2:2221421/166‑1 (MQ=255) tgcgcttatcccTCAATCGGGCACACACGTCCCCC‑GGCGTGTGGG‑CTAACTTTGGGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTAtgtg < 2:4380969/241‑1 (MQ=255) tACCTGAATCTGGTACACACGTCCTCC‑GGCCtgtg > 1:2146673/1‑35 (MQ=255) cccTGAATCTGGTACCCCCGTCCCCG‑GGCTTGTGGG‑CTGACTTTGGGGCACGGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAAc < 1:3902132/182‑1 (MQ=255) aCCTGAATCTGGTACACACGTCCTCC‑GGCCTGTgg > 2:3901479/1‑35 (MQ=255) aCCTGAATCTGGTACACACGTCCTCC‑GGCCTGTgg > 1:1058994/1‑35 (MQ=255) ctggAATCGGGAACACACGTCCTCC‑GGCTGGTGGG‑CTGACATTGGGGCACGGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCggggctgggg < 1:1412762/111‑1 (MQ=255) ccTGATTCTGTTCCACCCCCCCCCC‑GCCTTGGGGG‑CTGACATGGGGGCACGGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTg < 1:1233735/158‑1 (MQ=255) ccTGAATCTGGTACACACGTCCTCC‑GGCCTGTggg > 1:376780/1‑35 (MQ=255) ccTGAATCTGGTACACACGTCCTCC‑GGCCTGTggg > 2:486977/1‑35 (MQ=255) ccTGAATCTGGTACACACGTCCTCC‑GGCCTGTggg > 2:1233483/1‑35 (MQ=255) ccTGAATCGGATACACCCGTCCCCG‑GGCCTGGGGG‑CTGACTTTGTGGCCCGGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCAc < 1:487081/156‑1 (MQ=255) ctCTGGCACACCCCCCCCCC‑GCCTTGGGGG‑CTGCCTTTGGGGCACGGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAAcc < 2:5362896/158‑1 (MQ=255) aTCTGGTACACACGTCCTCC‑GGTCGGTGGG‑GGGACAGTGGGGACGGGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGc < 1:2034731/251‑1 (MQ=255) cTGGTACACACGTCCTCC‑GGCCTGTGGG‑CTGACATTGTgg < 2:2627246/40‑1 (MQ=255) cTGGTACACACGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAAcc > 1:5794496/1‑129 (MQ=255) cTGGTACACACGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGc > 2:3276894/1‑249 (MQ=255) cTGGTACACACGTCCTCC‑GGCCTGTGGG‑CTGAAATTGTgg > 1:2627684/1‑40 (MQ=255) ggTCCACACGCCCCCC‑GGCCTGGGGG‑CTGACTTTGGGGCACGGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCggggctgggg < 2:2861476/105‑1 (MQ=255) ggTACACCGGCCCCCC‑GGCTGGGGGG‑CGGACATGGGGGCAAGGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGAt < 1:1197587/159‑1 (MQ=255) ggTACACACGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCggggctgggg > 1:2861932/1‑105 (MQ=255) ggTACACACGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCt > 2:2356934/1‑116 (MQ=255) ggTACACACGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTAt > 1:644515/1‑144 (MQ=255) ggTACACACGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTg > 1:3455668/1‑149 (MQ=255) ggTACACACGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGAt > 2:1197341/1‑159 (MQ=255) ggTACACACGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCTGGCATGGCAGTg > 2:288347/1‑251 (MQ=255) ggTACACACGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTg > 1:1703003/1‑251 (MQ=255) acacacGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAg > 1:1508975/1‑138 (MQ=255) cacGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTc > 1:4104833/1‑111 (MQ=255) cacGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGc > 2:218884/1‑128 (MQ=255) cacGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTAt > 2:4493832/1‑138 (MQ=255) cacGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTAt > 1:291923/1‑138 (MQ=255) cacGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATAc > 2:3142406/1‑177 (MQ=255) cacGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCacaa > 1:655907/1‑250 (MQ=255) cGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACt > 1:25043/1‑78 (MQ=255) cctcc‑GGCTTGGGGG‑CTGACATTGTGGCACGGGAACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGAc < 1:3816220/206‑1 (MQ=255) cctcc‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCt > 2:5750447/1‑105 (MQ=255) cctcc‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAg > 1:254768/1‑167 (MQ=255) cctcc‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATAcc > 1:5210353/1‑173 (MQ=255) cctcc‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGAc > 2:3815615/1‑206 (MQ=255) cctcc‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGGAAGGACAACGCCGGTTATGTGAAGTTCggg > 1:2848465/1‑230 (MQ=255) tcc‑GCCCTGTGGG‑TTGAAATTGGGGCACAGGGACCCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATgtgcg < 1:4559683/251‑1 (MQ=255) | CGATAACAATGGCGGTATTGCCCGTGGGGCCACGCCGGAAAGCAGCGGCAGCTATGGATTCGTCCGTCTGGAGGGTGACCTGATGAGAACAGAGGTTGCCGGTATGTCTGTGACCGCGGGG‑GTATATGGTGCTGCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGT‑CC‑GGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCC‑GGCCTGTGGG‑CTGACATTGTGGCACAGGGAACCCGCCACAGCATGAAAGCGTCATCGGACAATAACGACTTCCGCGCCCGGGGCTGGGGCTGGCTGGGCTCACTGGAAACCGGTCTGCCCTTCAGTATCACTGACAACCTGATGCTGGAGCCACAACTGCAGTATACCTGGCAGGGACTTTCCCTGGATGACGGTAAGGACAACGCCGGTTATGTGAAGTTCGGGCATGGCAGTGCACAACATGTGCG > NC_000913/2073803‑2074294 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |