| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,578,143 | 0 | A | C | 50.6% | 86.5 / 164.4 | 87 | L79V (TTA→GTA) | maeB | malic enzyme: putative oxidoreductase/phosphotransacetylase |
| Reads supporting (aligned to +/- strand): ref base A (38/5); new base C (0/44); total (38/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.45e-19 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-15 | |||||||||||
GTTCGAGCGCGGCGACAACTTCAATAAATTTGTCCGGGTCGAGTTCGTCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGCGGCAACGCCTGGTGAGTAGGCCAGCGCCAGATCGCGC > NC_000913/2577996‑2578282 | gttCGAGCGCGGCGACAACTTCAATAAATTTGTCCGGGTCGAGTTCGTCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑ccc > 2:690216/1‑151 (MQ=255) tCGAGCGCGGCGACAACTTCAATAAATTTGTCCGGGTCGAGTTCGTCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑cccc > 1:835340/1‑150 (MQ=255) gAGCGCGGCGACAACTTCAATAAATTTGTCCGGGTCGAGTTCGTCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGc > 2:497739/1‑151 (MQ=255) aGCGCGGCGACAACTTCAATAAATTTGTCCGGGTCGAGTTCGTCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGc > 2:708534/1‑150 (MQ=255) aGCGCGGCGACAACTTCAATAAATTTGTCCGGGTCGAGTTCGTCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCa < 1:1222304/151‑1 (MQ=255) gcgcGGCGACAACTTCAATAAATTTGTCCGGGTCGAGTTCGTCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCAc > 2:325680/1‑151 (MQ=255) cgcgGCGACAACTTCAATAAATTTGTCCGGGTCGAGTTCGTCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCAcc > 1:141312/1‑151 (MQ=255) ggcgACAACTTCAATAAATTTGTCCGGGTCGAGTTCGTCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCAccgcc < 2:163862/151‑1 (MQ=255) ttaaaTAAATTTGTCGGGGTCGATTTCGTAAACTTA‑AATGTAAAATACATAAACCCCGGCGAATTTCTA‑AAACAGACCGCCTTTGCCTCCCATCCCCGT‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAC‑CCCCAGCACCGCCGTACCGtt < 2:1178609/147‑1 (MQ=255) cAATAAATTTGTCCGGGTCGAGTTCGTCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGtt > 1:735020/1‑148 (MQ=255) aTAAATTTGTCCGGGTCGAGTTCGTCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTag > 1:468574/1‑148 (MQ=255) aaaTTTGTCCGGGTCGAGTTCGTCAACTTC‑AATGTAAAATACATCAACCCCGGCAAATTTCTA‑AAACAGACCGCCCTTGCCTCCCATCCCCGT‑TTT‑GCCT‑GCC‑AGCGCGCCAATTTTGCCTAC‑CCCCAGCACCGCCGTACCGTTAGAGAt < 2:1017629/150‑1 (MQ=255) attttGCCCGGGTCGGTTTCCACATCTAC‑AATTAAAAAACCATAAACCCCGGCAATTTTCTA‑AAACAGACCCCCTTTGCCTCCCATCCCCGT‑TTT‑CCCT‑GCC‑GGCGCCCAAATTTTCCCTAC‑CCCCAGCACCGCCGTACCGTTAGAGATCa < 1:403516/149‑1 (MQ=255) tGTCCGGGTCGAGTTCGTCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGc > 2:770443/1‑151 (MQ=255) gTCCGGGTCGAGTTCGTCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGcc > 1:862386/1‑151 (MQ=255) tCCGGGTCGAGTTCGTCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGcc > 1:1466683/1‑150 (MQ=255) ccGGGTCGATTTCGTCAACTTA‑AATGAAAAATACATAAACCCCGGATATTTTCTA‑AAACAGACCCCCCTTGCCTTCCACCCCCGT‑TTT‑CCCT‑CCC‑AGCGCGCAAATGTTGCCAAC‑CCCCAGCACCGCCGTACCGTTAGAGATCACCg < 1:1636001/147‑1 (MQ=255) tCGAGTTCGTCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAgg > 1:361464/1‑150 (MQ=255) tCGAGTTCGTCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGt > 2:355098/1‑151 (MQ=255) gttttCGTAAACTTA‑AATTAAAATTCCATCAACCCGGGCAATTTTTTA‑AAACAGACCCCCCTTCCCTCCCACCCCCGT‑TTT‑CCCG‑CCC‑GGCCCGCAATTTTTCCCAAC‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAg < 1:976344/144‑1 (MQ=255) gAGTTCGTCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGtt > 2:218383/1‑150 (MQ=255) aGTTCGTCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTAc > 2:1173121/1‑151 (MQ=255) ttCGTCAACTTC‑AATGTAAAATCCACCACCCCGGGGAAATTTCTT‑AAAGAGACCGCCTTTGCCTTCCACCCCCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCTTAC‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGtt < 2:1198172/147‑1 (MQ=255) ttCGTCAACTTA‑ATTTAAAAATACAAC‑ACCCCGGGCAATTTTCT‑AAAAAAAACCCCCTTCCCCTCCCACCCCGGTTTT‑GCCT‑CCC‑CGCGCGCCATTGTTCCCTAC‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGtt < 1:1573943/147‑1 (MQ=255) tCGTCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTc > 1:747893/1‑151 (MQ=255) cGTCACCTTC‑AATGTAAAAAACATCACCCCCGGCAATTTTTTA‑AAACAGACCCCCCTTCCCTCCCATCACCGG‑TTT‑CCCC‑CCC‑CGCGCCCAAATGTTCCCTAC‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCg < 2:706544/151‑1 (MQ=255) tCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCggg > 2:953137/1‑151 (MQ=255) aaCTTC‑AATGCAAAAACCACCACCCCCGGCAATTTTCTA‑AAACAGACCCCCCTTCCCTCCCACCCCCTT‑TTT‑CCCT‑CCC‑AGCCCCCCATTTTTCCCTAC‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGc < 1:1229692/150‑1 (MQ=255) aCTTCAAATGTCAAAAACATCAACCCCGGCGATTTTCTT‑AAACAGACCCCCCTTCCTTCCCACCCCCGT‑TTT‑CCCT‑CCC‑AGCGCCCCATTGTTCCCTAC‑CCCCACCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGc < 2:1109339/150‑1 (MQ=255) cTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGt > 2:730737/1‑151 (MQ=255) ttC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGt > 1:165886/1‑150 (MQ=255) ttC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGt > 2:345862/1‑150 (MQ=255) c‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGtat > 1:1568090/1‑150 (MQ=255) aaaTGTAAAACACA‑CAACCCCCGCGGATTTTCT‑AAAAAAAACCCCCCTTCCCTCCCCCCCCTG‑TTTCCCCG‑GCC‑AGCCCCCCATTTTGCCCTAC‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGt < 1:1241636/147‑1 (MQ=255) tGTCAAATACATCAACCCCGGCAATTTTCTA‑AAACAGACCCCCCTTCCCTCCCATCCCCGT‑TTG‑CCCT‑GCC‑AGCGCCCAATTTTTCCCTAC‑CCCCACCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTatat < 2:1405063/149‑1 (MQ=255) gtaaaaaccATAAACCCCGGCGATTTTCTA‑AAACAGACCCCCTTTCCCTCCCACCCCCGT‑TTT‑GCCT‑GCC‑AGCGCGCCAATTTTGCCTAC‑CCCCACCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATAttt < 2:793608/142‑1 (MQ=255) aaaTCCACCAACCCCGGCAATTTTCTA‑AAACAGACCCCCCTTCCCTCCCACCCCGGG‑TTT‑GCCG‑CCC‑AGCGCCCAATTGTTCCCTAC‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGt < 2:523664/149‑1 (MQ=255) aaaTCCACCAACCCCGGCAAATTTTTA‑AAACAAACCCCCCTTCCCTTCCACCCCGGT‑TTT‑GCCT‑CCC‑AGCGCGCAAATGTTCCCTAC‑CCCCGGAACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTg < 2:607315/148‑1 (MQ=255) aaaTACACCACCCCCGGC‑AATTTTTT‑AAAAAAGACCCCCTTTCCCTCCCACCCCGGTTTT‑CCCT‑CCC‑AGCGCGCAAATGTTCCCTAC‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAg < 2:1493620/151‑1 (MQ=255) aaaCACATCACCCCCGGCAATTTTCTA‑AAAAAG‑ACCCCCTTTCCCTCCCACCCCGG‑TTT‑TCCTGGCC‑ACCGCCCCATTGTTCCCACC‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAg < 1:72408/151‑1 (MQ=255) cATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCtt > 1:41823/1‑150 (MQ=255) aTCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCtttt > 1:1338819/1‑151 (MQ=255) aTCAACCCCGGCAATTTTCTA‑AAACAAACCCCCCTTCCCTTCCACCCCGGG‑TTT‑GCCT‑GCC‑AGCGCCCAAATGTCGCCAAC‑CCCAAGAACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGc < 2:1143383/147‑1 (MQ=255) tCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCtttt > 1:600769/1‑150 (MQ=255) cAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTa > 1:1392312/1‑150 (MQ=255) cAACCCCGGCGAATTTCTA‑AAACAGAACGCCCTTGCCTCCCACCCCGGG‑TTT‑GCCT‑GCC‑AGCGCCCAAATGTGGCCTAC‑CCCCAGCGCCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCtttt < 2:835402/149‑1 (MQ=255) tCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACgg > 2:1705670/1‑151 (MQ=255) ggcaaTTTTTTAAAACAGACCCCCCTTCCCTCCCACCCCGGT‑TTT‑CCCT‑CCC‑CGCGCCCAATTGTTCCCTAC‑CCCCACCCCCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCt < 2:1335168/148‑1 (MQ=255) aaTTTCTT‑AAACAAACCGCCTTCCCCTTCCATCCCGGT‑TTT‑CCCT‑GCC‑GGCGCCCCATTTTGGCTTAC‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCtttt < 2:621003/150‑1 (MQ=255) tttttaaaacaaacCCCCCTTCCCTCCCACCCCCGT‑TTT‑GCCG‑GCC‑AGCGCCCAATTGTTCCCTAC‑CCCCAGCCCCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTc < 2:1145841/144‑1 (MQ=255) ttCTA‑AACCAGACCCCCCTTCCCTCCCCCCCCGGG‑TTG‑CCCT‑CCC‑GGCGC‑CCAAATTTGCCCAACCCCCACCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCttttt < 1:1676774/148‑1 (MQ=255) ttctaaacaagaccccccTTGCCTTCCACCCCCGG‑TTG‑CCCT‑CCC‑GGCGCCCAAGTTTCCCCTAC‑CCCAAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCg < 2:534667/135‑1 (MQ=255) t‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTc > 2:1569982/1‑151 (MQ=255) aaaacaaacCCCCTTTCCCTCCCATCCCCGT‑TTT‑GCCG‑CCC‑AGCGCCCAATTGTTGCTAAC‑CCCCAGCGCCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTc < 1:800685/150‑1 (MQ=255) aaaaCAGACCCCCCTTCCCTCCCCTCCCGGG‑TTT‑GCCT‑CCC‑GGCGCCCCAATTTTCCACAC‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTc < 1:1052549/150‑1 (MQ=255) aaacaaacCCCCCTTCCCTCCCACCCCCGG‑TTT‑GCCT‑GCC‑AGCCCCCCAATGTTCCCAAC‑CCCCACCCCCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGAttt < 2:696944/149‑1 (MQ=255) aaaaaaaccccccTTGCCTCCCACCCCCGG‑TTT‑CCCG‑CCC‑AGCGCCCAAATGTTCCCTAC‑CCCCACCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGAt < 2:165895/137‑1 (MQ=255) aaaCAGACCCCCTTTCCCTCCCACCCCCGT‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTCCCAAC‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGAt < 2:945541/147‑1 (MQ=255) aaaCAGACCCCCCTTGCCTCCCACCCCCGT‑TTG‑GCCG‑GCC‑AGCGCCCCAATTTTGCCTAC‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGAttt < 2:1514537/149‑1 (MQ=255) aaaCAGACCCCCCTTCCCTCCCACCCCCGT‑TTT‑GCCG‑CCC‑AGCGCCCAAATGTTCCCAAC‑CCCAAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGAt < 1:199277/147‑1 (MQ=255) aaaCAGACCCCCCTTCCCTCCCACCCCCGT‑TTT‑CCCT‑GCC‑AGCGCCCAATTTTTGCCAAC‑CCCCAGCCCCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGAt < 2:667878/147‑1 (MQ=255) aaaCAG‑ACCCCCTTTCCCTCCCTCCTCGG‑TTT‑TCCC‑GCCAAGCGCG‑CAATTTTCCCCAACCCCCAGCCCCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGAtt < 1:1404783/148‑1 (MQ=255) cccctttcccTCCCACCCCCGG‑TTT‑CCCT‑CCC‑AGCCCCCAAATGTTCCCAAC‑CCCAACCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAgg < 1:729565/143‑1 (MQ=255) cccccTTGCCTCCCACCCCCGT‑TTT‑CCCT‑CCC‑AGCCCGCCAGTTTTGCCAAC‑CCCCAGCCCCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCa < 1:323693/141‑1 (MQ=255) cGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAgg > 1:313492/1‑151 (MQ=255) gCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGt > 2:1286831/1‑151 (MQ=255) ccttcccttcCATCCCCGT‑TTG‑GCCT‑GCC‑AGCGCCCAATTGTTCCCTAC‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGc < 2:1679460/151‑1 (MQ=255) cccTCCCACCCCCGT‑TTT‑CCCT‑GCC‑AGCGCCCAATTGTTCCCAAC‑CCCCAGCCCCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAgg < 1:770380/143‑1 (MQ=255) cctcccaccccggg‑TTT‑CCCC‑GCC‑GGCGCGCAATTGTTCCCTAC‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGCGGCa < 1:323921/138‑1 (MQ=255) ccTCCCACCCCCGT‑TTT‑GCCG‑GCC‑AGCGCGCAAATGTTCCCAAC‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGCg < 2:1418268/147‑1 (MQ=255) cTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGCGGCAAc > 2:1320786/1‑151 (MQ=255) ccacccccGT‑TTT‑CCCT‑CCC‑AGCGCCCAAATGTTCCCAAC‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGc < 2:718639/136‑1 (MQ=255) ccacccccGG‑TTT‑CCCT‑GCC‑AGCGCGCAATTTTTGCCTAC‑CCCCAGCCCCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGCGGCAAc < 1:923000/142‑1 (MQ=255) tgtttt‑GCGA‑GCC‑CGCGCACCATTGTTCCCCCA‑CCCGGGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGCGGCAACGCCTGGTg < 1:1108578/146‑1 (MQ=255) gg‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGCGGCAACGCCTGGTGAg > 1:1428548/1‑150 (MQ=255) g‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGCGGCAACGCCTGGTGAGt > 2:479073/1‑150 (MQ=255) ttt‑GCCT‑CCC‑AGCGCGCAATTTTTCCCAAC‑CCCCAGCCCCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGCGGCAACGCCTGGTGa < 2:1415812/147‑1 (MQ=255) t‑gcct‑gcc‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGCGGCAACGCCTGGTGAGTAGGc > 1:931218/1‑151 (MQ=255) cct‑ccc‑AGCGCCCCATTTTTCCCTAC‑CCCCAGCCCCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGCGGCAACGCCTGGTGa < 1:215862/143‑1 (MQ=255) ct‑gcc‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGCGGCAACGCCTGGTGAGTAGGcc > 1:356873/1‑149 (MQ=255) c‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGCGGCAACGCCTGGTGAGTAGGCCAGCGcc > 2:807249/1‑151 (MQ=255) aGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGCGGCAACGCCTGGTGAGTAGGCCAGCGcc > 2:530937/1‑150 (MQ=255) aGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGCGGCAACGCCTGGTGAGTAGGCCAGCGcc > 1:583127/1‑150 (MQ=255) gcgcgcAATTTTTCCCAAC‑CCCCACCCCCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGCGGCAACGCCTGGTGAGTAGGCCAGCGCCa < 1:702519/150‑1 (MQ=255) cccaaaTTTTCCCTAC‑CCCCACCCCCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGCGGCAACGCCTGGTGAGTAGGCCAGCGCCAGAt < 2:1308845/146‑1 (MQ=255) aattctcccTAC‑CCCCACCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATGTTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGCGGCAACGCCTGGTGAGTAGGCCAGCGCCAGa < 1:1668002/138‑1 (MQ=255) aaTGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGCGGCAACGCCTGGTGAGTAGGCCAGCGCCAGATCgcgc > 1:1579098/1‑151 (MQ=255) | GTTCGAGCGCGGCGACAACTTCAATAAATTTGTCCGGGTCGAGTTCGTCAACTTC‑AATGTCAAATACATCAATCCCGGCGAATTTCTT‑AAACAGAACGCCCTTGCCTTCCATCACCGG‑TTT‑GCCT‑GCC‑AGCGCGCCAATGTTGCCTAA‑CCCCAGCACCGCCGTACCGTTAGAGATCACCGCCACCAGGTTACCTCGGGCGGTATATTTGTAGGCTTTTAACGGGTCTTTTTCGATTTCAAGACAAGGTGCGGCAACGCCTGGTGAGTAGGCCAGCGCCAGATCGCGC > NC_000913/2577996‑2578282 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |