Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,998,606 A→G pseudogene (223/1137 nt) ygeQ ← pseudogene, glycosyl hydrolase family 15, part of T3SS PAI ETT2 remnant

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,998,6060AG100.0% 531.2 / NA 134pseudogene (223/1137 nt)ygeQpseudogene, glycosyl hydrolase family 15, part of T3SS PAI ETT2 remnant
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (74/60);  total (74/60)

Only 100 of 136 total aligned reads displayed.

CAGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTT  >  NC_000913/2998458‑2998752
                                                                                                                                                    |                                                                                                                                                  
cAGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGt                                                                                                                                                  >  1:83241/1‑151 (MQ=255)
cAGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGt                                                                                                                                                  <  1:546419/151‑1 (MQ=255)
 aGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTg                                                                                                                                                 >  4:765699/1‑151 (MQ=255)
 aGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTg                                                                                                                                                 <  4:1224907/151‑1 (MQ=255)
  gACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTAtggtgg                                                                                                                                                <  1:654624/151‑1 (MQ=255)
   aCAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGc                                                                                                                                               >  4:236657/1‑151 (MQ=255)
       catcatAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCtt                                                                                                                                           <  4:597771/151‑1 (MQ=255)
       catcatAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCtt                                                                                                                                           <  1:1151874/151‑1 (MQ=255)
           atAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTAtt                                                                                                                                       >  1:525502/1‑151 (MQ=255)
              gTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTc                                                                                                                                     >  1:982645/1‑150 (MQ=255)
                 ggTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCAttt                                                                                                                                 <  1:1588001/151‑1 (MQ=255)
                        gCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAAtt                                                                                                                          <  4:1196178/151‑1 (MQ=255)
                         ccGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAAttt                                                                                                                         <  4:318681/151‑1 (MQ=255)
                          cGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTg                                                                                                                        >  4:260274/1‑151 (MQ=255)
                           gCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTgg                                                                                                                       <  1:1498248/151‑1 (MQ=255)
                               ttttGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTg                                                                                                                    >  4:1272397/1‑150 (MQ=255)
                                tttGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGa                                                                                                                   <  1:632924/150‑1 (MQ=255)
                                  tGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTg                                                                                                                >  3:183926/1‑151 (MQ=255)
                                   gTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTg                                                                                                                >  1:899768/1‑150 (MQ=255)
                                     cATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGaa                                                                                                              <  1:1341193/150‑1 (MQ=255)
                                     cATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGaa                                                                                                              <  3:341675/150‑1 (MQ=255)
                                      aTCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATc                                                                                                            >  4:1408523/1‑151 (MQ=255)
                                         ttCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAAt                                                                                                             >  3:235429/1‑147 (MQ=255)
                                         ttCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATc                                                                                                            >  4:513682/1‑148 (MQ=255)
                                          tCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCaga                                                                                                         >  1:1709458/1‑150 (MQ=255)
                                           cGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCagaag                                                                                                       <  1:1610754/151‑1 (MQ=255)
                                           cGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCaga                                                                                                         >  3:317839/1‑149 (MQ=255)
                                            gAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCagaaga                                                                                                      <  2:178091/151‑1 (MQ=255)
                                             aaaGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGAc                                                                                                     >  2:177946/1‑151 (MQ=255)
                                              aaGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACg                                                                                                    >  4:1693245/1‑151 (MQ=255)
                                                  aGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATaa                                                                                                <  1:299119/151‑1 (MQ=255)
                                                    aaGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAAtt                                                                                              <  2:438535/151‑1 (MQ=255)
                                                     aGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTa                                                                                             <  1:1276499/151‑1 (MQ=255)
                                                        aaGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAgg                                                                                           >  4:1846357/1‑150 (MQ=255)
                                                        aaGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGa                                                                                          <  4:1209501/151‑1 (MQ=255)
                                                          gAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGAt                                                                                         >  4:241527/1‑150 (MQ=255)
                                                          gAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGAt                                                                                         >  4:890336/1‑150 (MQ=255)
                                                              aaaCGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACtt                                                                                     >  1:75268/1‑150 (MQ=255)
                                                              aaaCGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACtt                                                                                     <  2:5652/150‑1 (MQ=255)
                                                               aaCGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTAt                                                                                   <  1:1161619/151‑1 (MQ=255)
                                                                aCGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATc                                                                                  <  1:806166/151‑1 (MQ=255)
                                                                   ttCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTgg                                                                               >  1:1327842/1‑151 (MQ=255)
                                                                    tCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTgg                                                                               >  1:336274/1‑150 (MQ=255)
                                                                     ccccAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGa                                                                              <  3:114550/150‑1 (MQ=255)
                                                                       ccAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGAttt                                                                           <  3:456623/151‑1 (MQ=255)
                                                                       ccAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGAttt                                                                           <  1:1224091/151‑1 (MQ=255)
                                                                       ccAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGAttt                                                                           <  4:542591/151‑1 (MQ=255)
                                                                        cAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTa                                                                          <  1:1145943/151‑1 (MQ=255)
                                                                         aGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTaa                                                                         <  4:1922958/151‑1 (MQ=255)
                                                                         aGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTa                                                                          >  1:687380/1‑150 (MQ=255)
                                                                          gggTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAAc                                                                        <  1:1176285/151‑1 (MQ=255)
                                                                           ggTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACg                                                                       <  1:1718285/151‑1 (MQ=255)
                                                                                 tcCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGataaat                                                                 >  4:539103/1‑151 (MQ=255)
                                                                                   cGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGataaata                                                                >  1:1173396/1‑150 (MQ=255)
                                                                                       aaCGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACttt                                                           >  1:329319/1‑151 (MQ=255)
                                                                                       aaCGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACttt                                                           >  4:800008/1‑151 (MQ=255)
                                                                                         cGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTa                                                         <  4:603728/151‑1 (MQ=255)
                                                                                          gTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTAt                                                        >  1:1004859/1‑151 (MQ=255)
                                                                                             aaCTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCt                                                      <  1:258892/150‑1 (MQ=255)
                                                                                             aaCTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTg                                                     >  1:1468737/1‑151 (MQ=255)
                                                                                              aCTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGt                                                    >  1:730014/1‑151 (MQ=255)
                                                                                                  ttgtgtgtTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTtgct                                                >  4:572929/3‑151 (MQ=255)
                                                                                                  tCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTtgc                                                 <  4:1073387/150‑1 (MQ=255)
                                                                                                   cGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTtgctg                                               >  1:1109066/1‑151 (MQ=255)
                                                                                                   cGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTtgctg                                               <  3:382985/151‑1 (MQ=255)
                                                                                                    gtgtgtTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTtgctgc                                              >  4:884027/1‑151 (MQ=255)
                                                                                                         ttttCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGTTAAATAACTTTTATCTGTTGCTGCCCCCg                                         >  4:1887775/1‑151 (MQ=255)
                                                                                                          tttCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCg                                         >  1:1880634/1‑150 (MQ=255)
                                                                                                               gTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGaa                                    <  4:1127065/150‑1 (MQ=255)
                                                                                                               gTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAAt                                   <  4:235090/151‑1 (MQ=255)
                                                                                                               gTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAAt                                   <  1:1274496/151‑1 (MQ=255)
                                                                                                                ttAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAAtt                                  >  4:1467191/1‑151 (MQ=255)
                                                                                                                 tAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAAtt                                  >  4:187986/1‑150 (MQ=255)
                                                                                                                 tAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAAtt                                  >  1:165619/1‑150 (MQ=255)
                                                                                                                  aaTGTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTaa                                <  4:71409/151‑1 (MQ=255)
                                                                                                                     gTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGa                              <  4:368830/150‑1 (MQ=255)
                                                                                                                     gTTAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGa                              >  2:418428/1‑150 (MQ=255)
                                                                                                                      ttAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAAt                            >  1:1250910/1‑151 (MQ=255)
                                                                                                                       tAGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATg                           >  1:647461/1‑151 (MQ=255)
                                                                                                                        aGCAATCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATg                           <  1:1826685/150‑1 (MQ=255)
                                                                                                                           aaTCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTa                        >  4:246639/1‑150 (MQ=255)
                                                                                                                            aTCCTTGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTaa                       >  4:1664325/1‑150 (MQ=255)
                                                                                                                            aTCCTTGAATTTCGTATTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTaaa                      <  1:1393898/151‑1 (MQ=255)
                                                                                                                                 tGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATAc                   <  1:525498/149‑1 (MQ=255)
                                                                                                                                 tGAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATAc                   <  1:260195/149‑1 (MQ=255)
                                                                                                                                  gAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAg                 <  4:1154272/150‑1 (MQ=255)
                                                                                                                                  gAATTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAg                 <  4:1299994/150‑1 (MQ=255)
                                                                                                                                   aaTTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATAc                   >  4:1553743/1‑147 (MQ=255)
                                                                                                                                   aaTTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATAc                   >  4:275374/1‑147 (MQ=255)
                                                                                                                                   aaTTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGAt               <  2:378789/151‑1 (MQ=255)
                                                                                                                                    aTTTCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGAtt              >  1:897997/1‑151 (MQ=255)
                                                                                                                                       tCGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCa            <  1:1692578/150‑1 (MQ=255)
                                                                                                                                        cGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACt          <  1:1157794/151‑1 (MQ=255)
                                                                                                                                        cGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACt          <  4:597304/151‑1 (MQ=255)
                                                                                                                                        cGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACt          >  4:1016742/1‑151 (MQ=255)
                                                                                                                                        cGTCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACt          >  1:179103/1‑151 (MQ=255)
                                                                                                                                          tCTTTGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCg        >  2:184938/1‑151 (MQ=255)
                                                                                                                                             ttGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCg        <  4:148067/148‑1 (MQ=255)
                                                                                                                                              tGGTATGGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCAc    >  4:292977/1‑151 (MQ=255)
                                                                                                                                                 tatgGTGGCTCTTTATTTCATTTTGTAATTTGGCTGTGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACtt  >  2:50251/1‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
CAGACAGCATCATAGTGGGTTTCTGCCGCTGTTTTGTCATCTTCGAAAGTAGAAGCAAGAATAAACGTTCCCCAGGGTTTCTCCGTCAACGTTAACTTTCGTGTGTTTTCTGTTAATGTTAGCAATCCTTGAATTTCGTCTTTGGTATAGTGGCTCTTTATTTCATTTTGTAATTTGGCTGAGTGAATCAGAAGACGATAATTAGGATACTTATCTGGATTTAACGATAAATAACTTTTATCTGTTGCTGCCCCCGTGGAATTAAGAATGTTAAATACAGATTCACTCGTCACTT  >  NC_000913/2998458‑2998752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑