Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 394,030 A→G pseudogene (1061/1449 nt) yaiT → pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913394,0300AG100.0% 591.2 / NA 154pseudogene (1061/1449 nt)yaiTpseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (67/87);  total (67/87)

Only 100 of 154 total aligned reads displayed.

GTTGATGGTAGCTTGAGCTACTCTCACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTCACCTACAGCG  >  NC_000913/393882‑394176
                                                                                                                                                    |                                                                                                                                                  
gttgATGGTAGCTTGAGCTACTCTCACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCg                                                                                                                                                  >  4:1437613/1‑151 (MQ=255)
  tgATGGTAGCTTGAGCTACTCTCACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGt                                                                                                                                                 <  4:131142/150‑1 (MQ=255)
   gATGGTAGCTTGAGCTACTCTCACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTg                                                                                                                                                <  4:226335/150‑1 (MQ=255)
    aTGGTAGCTTGAGCTACTCTCACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGAc                                                                                                                                              >  4:201492/1‑151 (MQ=255)
     tGGTAGCTTGAGCTACTCTCACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACt                                                                                                                                             >  3:339043/1‑151 (MQ=255)
      ggTAGCTTGAGCTACTCTCACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACt                                                                                                                                             <  2:163696/150‑1 (MQ=255)
      ggTAGCTTGAGCTACTCTCACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTc                                                                                                                                            >  4:1661622/1‑151 (MQ=255)
         aGCTTGAGCTACTCTCACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCtt                                                                                                                                         >  1:1179939/1‑151 (MQ=255)
           cTTGAGCTACTCTCACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTAc                                                                                                                                       >  4:462820/1‑151 (MQ=255)
              gAGCTACTCTCACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGc                                                                                                                                    >  1:1303165/1‑151 (MQ=255)
               aGCTACTCTCACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCa                                                                                                                                   <  2:228889/151‑1 (MQ=255)
                gCTACTCTCACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGc                                                                                                                                    >  2:48657/1‑149 (MQ=255)
                 cTACTCTCACTTCAACAACGACCTGTCTGCAACCATGATCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGCGATGCTGGTTGCGTGACTCCTTACGGCAg                                                                                                                                  >  1:323342/1‑150 (MQ=255)
                  tACTCTCACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTTGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCg                                                                                                                                >  4:374859/1‑151 (MQ=255)
                  tACTCTCACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCg                                                                                                                                >  1:94283/1‑151 (MQ=255)
                   aCTCTCACTTCAACAACGACCTGTCTGCAACCATGAGCGACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGt                                                                                                                               <  4:68460/151‑1 (MQ=255)
                    ctctCACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGtt                                                                                                                              >  1:1080462/1‑151 (MQ=255)
                     tctcACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGttt                                                                                                                             >  4:577752/1‑151 (MQ=255)
                       tcACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCt                                                                                                                           >  1:389197/1‑151 (MQ=255)
                        cACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGttt                                                                                                                             <  4:407667/148‑1 (MQ=255)
                        cACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGttt                                                                                                                             <  2:279140/148‑1 (MQ=255)
                        cACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTc                                                                                                                            <  1:448754/149‑1 (MQ=255)
                            tCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGt                                                                                                                        <  4:324278/149‑1 (MQ=255)
                            tCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTc                                                                                                                       <  3:544802/150‑1 (MQ=255)
                            tCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCt                                                                                                                      >  3:453970/1‑151 (MQ=255)
                             caacaaCGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTg                                                                                                                     <  3:506318/151‑1 (MQ=255)
                              aacaacGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTg                                                                                                                     <  4:988542/150‑1 (MQ=255)
                               acaacGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGtt                                                                                                                   >  4:1000459/1‑151 (MQ=255)
                               acaacGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGtt                                                                                                                   <  1:1836631/151‑1 (MQ=255)
                               acaacGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGt                                                                                                                    >  3:115101/1‑150 (MQ=255)
                                 aacGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTcc                                                                                                                 >  1:852401/1‑151 (MQ=255)
                                   cGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAg                                                                                                               <  4:294587/151‑1 (MQ=255)
                                      ccTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCt                                                                                                            >  3:112957/1‑151 (MQ=255)
                                      ccTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCt                                                                                                            <  1:1648084/151‑1 (MQ=255)
                                         gTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTg                                                                                                           <  1:819446/149‑1 (MQ=255)
                                         gTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTg                                                                                                           <  1:1778712/149‑1 (MQ=255)
                                         gTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTg                                                                                                           <  2:535744/149‑1 (MQ=255)
                                             gCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGtgatg                                                                                                     >  4:1064002/1‑151 (MQ=255)
                                             gCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGtga                                                                                                       <  2:112962/149‑1 (MQ=255)
                                                    tGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTAcc                                                                                               >  1:1914247/1‑150 (MQ=255)
                                                    tGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTAcc                                                                                               >  1:243747/1‑150 (MQ=255)
                                                      aGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAg                                                                                             >  2:150967/1‑150 (MQ=255)
                                                      aGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGc                                                                                            >  1:298716/1‑151 (MQ=255)
                                                        cAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTg                                                                                          >  1:1266450/1‑151 (MQ=255)
                                                          aCGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAg                                                                                        <  4:415672/151‑1 (MQ=255)
                                                            ggTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCa                                                                                      <  4:1638261/151‑1 (MQ=255)
                                                             gTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCaa                                                                                     <  2:218071/151‑1 (MQ=255)
                                                               aCTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACg                                                                                   <  2:481101/151‑1 (MQ=255)
                                                                cTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACg                                                                                   >  4:363761/1‑150 (MQ=255)
                                                                 ttACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGAc                                                                                 >  3:93465/1‑151 (MQ=255)
                                                                   aCGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACa                                                                                <  4:1766319/150‑1 (MQ=255)
                                                                     gTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGa                                                                             <  1:1466153/151‑1 (MQ=255)
                                                                        gACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGaaa                                                                           <  4:735548/150‑1 (MQ=255)
                                                                        gACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGaa                                                                            >  4:487384/1‑149 (MQ=255)
                                                                          cGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGtt                                                                        >  4:1226475/1‑151 (MQ=255)
                                                                               gCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACgg                                                                   >  1:61337/1‑151 (MQ=255)
                                                                                cACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGt                                                                  <  3:331377/151‑1 (MQ=255)
                                                                                  ccAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCa                                                                <  4:607972/151‑1 (MQ=255)
                                                                                    aaCTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGt                                                              <  2:185577/151‑1 (MQ=255)
                                                                                    aaCTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGt                                                              >  2:423853/1‑151 (MQ=255)
                                                                                    aaCTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGt                                                              <  4:827212/151‑1 (MQ=255)
                                                                                      cTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTc                                                             <  4:549827/150‑1 (MQ=255)
                                                                                        ccGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTa                                                          <  1:1221430/151‑1 (MQ=255)
                                                                                         cGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTAc                                                         <  1:1074835/151‑1 (MQ=255)
                                                                                           aCGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGa                                                       <  4:1580630/151‑1 (MQ=255)
                                                                                              cTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGAc                                                      >  1:1308737/1‑149 (MQ=255)
                                                                                              cTTGGGGCTTCGGTTTGAAAGCAGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGAc                                                      >  4:714508/1‑149 (MQ=255)
                                                                                                tGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGc                                                   <  2:133158/150‑1 (MQ=255)
                                                                                                 ggggCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCAt                                                 <  1:1528373/151‑1 (MQ=255)
                                                                                                 ggggCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCAt                                                 <  4:810398/151‑1 (MQ=255)
                                                                                                  gggCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATg                                                >  4:1346452/1‑151 (MQ=255)
                                                                                                   ggCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGc                                               <  2:310432/151‑1 (MQ=255)
                                                                                                       tCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGtt                                            >  4:1101369/1‑150 (MQ=255)
                                                                                                       tCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGtt                                            <  1:1715467/150‑1 (MQ=255)
                                                                                                       tCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGtt                                            <  3:466056/150‑1 (MQ=255)
                                                                                                       tCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGt                                             <  1:616247/149‑1 (MQ=255)
                                                                                                        cGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTAt                                          >  4:460493/1‑151 (MQ=255)
                                                                                                         ggTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATg                                         >  4:1752114/1‑151 (MQ=255)
                                                                                                          gTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGa                                        <  1:1256577/151‑1 (MQ=255)
                                                                                                            ttGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAAc                                      >  1:1491817/1‑151 (MQ=255)
                                                                                                             tGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAAc                                      <  1:10401/150‑1 (MQ=255)
                                                                                                              gAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACt                                     <  4:1912581/150‑1 (MQ=255)
                                                                                                              gAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACt                                     <  1:1841405/150‑1 (MQ=255)
                                                                                                                 aGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGgt                                 <  2:279310/151‑1 (MQ=255)
                                                                                                                         aCGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATg                          <  4:1595860/150‑1 (MQ=255)
                                                                                                                          cGACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCa                        <  1:948900/151‑1 (MQ=255)
                                                                                                                           gACTTCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGc                         >  1:740920/1‑149 (MQ=255)
                                                                                                                               tCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGtt                    >  4:1571109/1‑150 (MQ=255)
                                                                                                                               tCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGt                     <  1:1018682/149‑1 (MQ=255)
                                                                                                                               tCAAACTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGt                     <  1:663670/149‑1 (MQ=255)
                                                                                                                                  aaCTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATAc                <  4:1595802/151‑1 (MQ=255)
                                                                                                                                   aCTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATAcc               >  1:193005/1‑151 (MQ=255)
                                                                                                                                    cTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCt              >  1:259487/1‑151 (MQ=255)
                                                                                                                                    cTGGGTGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCt              >  4:77857/1‑151 (MQ=255)
                                                                                                                                         tGATGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTCAcc         >  1:1451308/1‑151 (MQ=255)
                                                                                                                                           aTGCTGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTCACCt        >  4:781308/1‑150 (MQ=255)
                                                                                                                                               tGGTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTCACCTACAg    >  4:1422497/1‑150 (MQ=255)
                                                                                                                                                ggTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTCACCTACAg    <  4:61352/149‑1 (MQ=255)
                                                                                                                                                ggTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTCACCTACAGc   <  4:690342/150‑1 (MQ=255)
                                                                                                                                                ggTTGCGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTCACCTACAGc   <  1:443693/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
GTTGATGGTAGCTTGAGCTACTCTCACTTCAACAACGACCTGTCTGCAACCATGAGCAACGGTACTTACGTTGACGGTAGCACCAACTCCGACGCTTGGGGCTTCGGTTTGAAAGCCGGTTACGACTTCAAACTGGGTGATGCTGGTTACGTGACTCCTTACGGCAGCGTTTCTGGTCTGTTCCAGTCTGGTGATGACTACCAGCTGAGCAACGACATGAAAGTTGACGGTCAGTCTTACGACAGCATGCGTTATGAACTGGGTGTAGATGCAGGTTATACCTTCACCTACAGCG  >  NC_000913/393882‑394176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: