Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 577,085 G→A intergenic (‑260/‑313) nmpC ← / → essD DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage/DLP12 prophage; putative phage lysis protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913577,0850GA100.0% 716.6 / NA 178intergenic (‑260/‑313)nmpC/essDDLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage/DLP12 prophage; putative phage lysis protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (81/97);  total (81/97)

Only 100 of 178 total aligned reads displayed.

GTGAAGTAGATCTCTATTTTTATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGGCTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGT  >  NC_000913/576937‑577231
                                                                                                                                                    |                                                                                                                                                  
gtgAAGTAGATCTCTATTTTTATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACt                                                                                                                                                  <  1:752096/151‑1 (MQ=255)
  gAAGTAGATCTCTATTTTTATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTa                                                                                                                                                 <  1:1681036/150‑1 (MQ=255)
  gAAGTAGATCTCTATTTTTATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTa                                                                                                                                                 <  4:568768/150‑1 (MQ=255)
   aaGTAGATCTCTATTTTTATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTaaa                                                                                                                                               <  1:1306699/151‑1 (MQ=255)
    aGTAGATCTCTATTTTTATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTaaa                                                                                                                                               >  4:544226/1‑150 (MQ=255)
     gTAGATCTCTATTTTTATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTaaaaa                                                                                                                                             <  1:959198/151‑1 (MQ=255)
       aGATCTCTATTTTTATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATa                                                                                                                                           <  1:281959/151‑1 (MQ=255)
              tATTTTTATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTgg                                                                                                                                    >  4:1453937/1‑151 (MQ=255)
               aTTTTTATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACt                                                                                                                                      <  1:1014451/148‑1 (MQ=255)
               aTTTTTATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTgg                                                                                                                                    >  4:147452/1‑150 (MQ=255)
               aTTTTTATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTgg                                                                                                                                    >  4:1766333/1‑150 (MQ=255)
                  tttATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGaaa                                                                                                                                 <  4:1195182/150‑1 (MQ=255)
                  tttATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGaaa                                                                                                                                 <  4:1045395/150‑1 (MQ=255)
                  tttATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGaaa                                                                                                                                 <  4:1329566/150‑1 (MQ=255)
                   ttATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAat                                                                                                                                <  4:1699520/150‑1 (MQ=255)
                    tATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAatt                                                                                                                               >  3:392221/1‑150 (MQ=255)
                        tGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTAtttt                                                                                                                          >  1:1086122/1‑151 (MQ=255)
                         gAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTAttttt                                                                                                                         >  4:1085187/1‑151 (MQ=255)
                         gAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTAtttt                                                                                                                          <  3:384744/150‑1 (MQ=255)
                         gAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTAttt                                                                                                                           <  1:21398/149‑1 (MQ=255)
                          aaCTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTAtttttt                                                                                                                        <  2:456449/151‑1 (MQ=255)
                          aaCTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTAtttttt                                                                                                                        <  1:555699/151‑1 (MQ=255)
                            cTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTgg                                                                                                                      >  4:1156267/1‑151 (MQ=255)
                              tttttCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGt                                                                                                                     <  4:547248/150‑1 (MQ=255)
                                 ttCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTAtt                                                                                                                 >  1:763540/1‑151 (MQ=255)
                                  tCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTAttt                                                                                                                >  4:1777507/1‑151 (MQ=255)
                                    tATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATttgt                                                                                                              >  4:1723882/1‑151 (MQ=255)
                                     aTCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATttgtt                                                                                                             <  1:1775010/151‑1 (MQ=255)
                                      tCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATttgtt                                                                                                             >  1:664578/1‑150 (MQ=255)
                                       cGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATttgttg                                                                                                            >  1:1705696/1‑150 (MQ=255)
                                       cGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATttgttg                                                                                                            >  4:1833308/1‑150 (MQ=255)
                                       cGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATttgtt                                                                                                             >  4:1603776/1‑149 (MQ=255)
                                        gAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATttgttg                                                                                                            >  2:281572/1‑149 (MQ=255)
                                                ttCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCtt                                                                                                  >  4:285409/1‑151 (MQ=255)
                                                   aTGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGGTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATg                                                                                               >  1:336046/1‑151 (MQ=255)
                                                   aTGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTAt                                                                                                <  4:1814035/150‑1 (MQ=255)
                                                    tGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATg                                                                                               >  3:85211/1‑150 (MQ=255)
                                                      gCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTa                                                                                             <  3:146905/150‑1 (MQ=255)
                                                           tGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTTTTGAGATTTGCTTATGTATTTGt                                                                                        <  1:601475/150‑1 (MQ=255)
                                                           tGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTAttt                                                                                          <  4:1225304/148‑1 (MQ=255)
                                                           tGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGt                                                                                        >  1:819224/1‑150 (MQ=255)
                                                             gCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAgt                                                                                     <  2:184249/151‑1 (MQ=255)
                                                                gAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAgtggt                                                                                  <  4:1260197/151‑1 (MQ=255)
                                                                gAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAgtggt                                                                                  >  2:478790/1‑151 (MQ=255)
                                                                gAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAgtgg                                                                                   <  4:740462/150‑1 (MQ=255)
                                                                gAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAgtg                                                                                    <  4:81087/149‑1 (MQ=255)
                                                                    aaaaataaaTCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGttt                                                                              >  4:343450/1‑151 (MQ=255)
                                                                          aaatCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAAt                                                                         >  2:91625/1‑150 (MQ=255)
                                                                           aatCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATa                                                                        >  1:1515616/1‑150 (MQ=255)
                                                                             tCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTc                                                                     >  1:1202384/1‑151 (MQ=255)
                                                                                aTTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCg                                                                    <  4:831705/149‑1 (MQ=255)
                                                                                 ttAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGt                                                                  >  4:1850781/1‑150 (MQ=255)
                                                                                 ttAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGt                                                                  >  4:1119552/1‑150 (MQ=255)
                                                                                  tAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTa                                                                 <  4:410646/150‑1 (MQ=255)
                                                                                  tAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTa                                                                 <  1:1549004/150‑1 (MQ=255)
                                                                                  tAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTa                                                                 <  1:370167/150‑1 (MQ=255)
                                                                                    gCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCa                                                              <  4:457531/151‑1 (MQ=255)
                                                                                      cAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCAtt                                                            <  1:94831/151‑1 (MQ=255)
                                                                                      cAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCAtt                                                            >  4:639990/1‑151 (MQ=255)
                                                                                        aTTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATtct                                                          <  1:1818678/151‑1 (MQ=255)
                                                                                          ttATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCGATACTCGGTAGCATtctc                                                         <  4:163347/150‑1 (MQ=255)
                                                                                            atatTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCa                                                      <  4:898560/151‑1 (MQ=255)
                                                                                            atatTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCa                                                      <  1:127191/151‑1 (MQ=255)
                                                                                              atTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCaa                                                     <  4:1641048/150‑1 (MQ=255)
                                                                                                tAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAat                                                   <  4:1621471/150‑1 (MQ=255)
                                                                                                       tGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCAttt                                            >  3:193052/1‑150 (MQ=255)
                                                                                                        gTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAg                                          <  3:298349/151‑1 (MQ=255)
                                                                                                          tatttatAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTg                                        >  1:1519139/1‑151 (MQ=255)
                                                                                                           atttatAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTgg                                       >  1:1104511/1‑151 (MQ=255)
                                                                                                           atttatAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTg                                        <  4:1550806/150‑1 (MQ=255)
                                                                                                           atttatAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTg                                        <  1:1578328/150‑1 (MQ=255)
                                                                                                           atttatAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTg                                        <  2:492889/150‑1 (MQ=255)
                                                                                                            tttatAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGt                                      >  4:322849/1‑151 (MQ=255)
                                                                                                               ataAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTta                                   <  1:274690/151‑1 (MQ=255)
                                                                                                                  aGTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTtacgt                                <  4:654921/151‑1 (MQ=255)
                                                                                                                   gTGCTCTATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTtacgta                               <  4:249994/151‑1 (MQ=255)
                                                                                                                       tctATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTacgtacgt                            >  4:1757380/1‑150 (MQ=255)
                                                                                                                        ctATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTacgtacgt                            <  4:1407810/149‑1 (MQ=255)
                                                                                                                        ctATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTacgtacgt                            <  1:1760435/149‑1 (MQ=255)
                                                                                                                        ctATAATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTacgtacgt                            <  4:1414466/149‑1 (MQ=255)
                                                                                                                          ataATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTAcgtacgta                           <  1:1511055/148‑1 (MQ=255)
                                                                                                                          ataATTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTAcgtacgta                           <  1:1280260/148‑1 (MQ=255)
                                                                                                                            aaTTTGAAGGTTCAATTTAAACCGACTAAAAATAACGCTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTaaaaa                       <  2:5165/150‑1 (MQ=255)
                                                                                                                            aaTTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTaaaaa                       <  2:261086/150‑1 (MQ=255)
                                                                                                                            aaTTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTaaaaa                       <  1:1455548/150‑1 (MQ=255)
                                                                                                                             aTTTGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAAt                     >  1:77522/1‑151 (MQ=255)
                                                                                                                              tttGAAGGTTCAATTTAAACCGAATAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAAtt                    >  2:214425/1‑151 (MQ=255)
                                                                                                                               ttGAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTg                   >  1:1000593/1‑151 (MQ=255)
                                                                                                                                 gAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTgg                  <  2:357664/150‑1 (MQ=255)
                                                                                                                                 gAAGGTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGt                 <  3:260643/151‑1 (MQ=255)
                                                                                                                                    ggTTCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTAt              <  4:608393/151‑1 (MQ=255)
                                                                                                                                      ttCAATTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGc            >  1:700567/1‑151 (MQ=255)
                                                                                                                                         aaTTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTCTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGt         >  3:187529/1‑151 (MQ=255)
                                                                                                                                          aTTTAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGtt        >  2:8691/1‑151 (MQ=255)
                                                                                                                                             tAAACCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTaa      <  4:128997/150‑1 (MQ=255)
                                                                                                                                              aaaCCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAaga    <  4:1510425/151‑1 (MQ=255)
                                                                                                                                              aaaCCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAag     <  1:1333438/150‑1 (MQ=255)
                                                                                                                                               aaCCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAagag   <  1:896924/151‑1 (MQ=255)
                                                                                                                                                aCCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGt  >  1:1872102/1‑151 (MQ=255)
                                                                                                                                                aCCGACTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGt  >  1:1225502/1‑151 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
GTGAAGTAGATCTCTATTTTTATCTGAACTTTTTTCTATCGAATCCTATTCATGGCTCTTGGCTGAATAAAAATAAATCTATTAGCCAATTTATATTAACGGCTGTTATTTATAAGTGCTCTATAATTTGAAGGTTCAATTTAAACCGGCTAAAAATAACACTGGAAATTATTTTTTGGTTATTTGTTGAGATTTGCTTATGTATTTGTAGTGGTGTTTTCAATACTCGGTAGCATTCTCTCAAATATCATTTAGTGGTTTACGTACGTAAAAAATTGGTTATGCTGTTAAGAGT  >  NC_000913/576937‑577231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: