| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,098,260 | G→A | D14D (GAC→GAT) | wzzB ← | regulator of length of O‑antigen component of lipopolysaccharide chains |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,098,260 | 0 | G | A | 99.4% | 707.7 / ‑3.8 | 175 | D14D (GAC→GAT) | wzzB | regulator of length of O‑antigen component of lipopolysaccharide chains |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (79/95); minor base T (0/1); total (79/96) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.58e-01 | |||||||||||
Only 100 of 175 total aligned reads displayed.
AGTGATAATTGCTGTTGACGTCCATTTCTCCTTCGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATGAATTGTTGTGTAAGTAAC > NC_000913/2098113‑2098406 | aGTGATAATTGCTGTTGACGTCCATTTCTCCTTCGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATc > 1:692246/1‑150 (MQ=255) gTGATAATTGCTGTTGACGTCCATTTCTCCTTCGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCAt > 1:1103611/1‑151 (MQ=255) tGATAATTGCTGTTGACGTCCATTTCTCCTTCGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCAt < 4:835842/150‑1 (MQ=255) aTAATTGCTGTTGACGTCCATTTCTCCTTCGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGt > 4:228252/1‑151 (MQ=255) tAATTGCTGTTGACGTCCATTTCTCCTTCGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGtt > 4:938041/1‑151 (MQ=255) tAATTGCTGTTGACGTCCATTTCTCCTTCGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGtt > 4:713301/1‑151 (MQ=255) tAATTGCTGTTGACGTCCATTTCTCCTTCGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGtt > 1:3207/1‑151 (MQ=255) aaTTGCTGTTGACGTCCATTTCTCCTCCGCTACTGCAAAATATCCAATAGCCAGGGAAATAGCCAAAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATg < 1:1450591/147‑1 (MQ=255) aaTTGCTGTTGACGTCCATTTCCCCTTCGCTACTGCAAAAAATCCAAGAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCAt < 2:179401/146‑1 (MQ=255) gCTGTTGACGTCCATTTCTCCTTCGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGcc > 4:494658/1‑151 (MQ=255) gtggACGTCCATTTCCCCTTCGCTACTGCAAAATATCCAATAGCCAGGGCAATAGCCAAAAGAACGGAAATGATGATTGCCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCa < 4:1337975/147‑1 (MQ=255) ttGCCGTCCATTTCTCCTTCGCTACTGCCAAATACCCAATAGCCAGGGCAATAGCCACAATGACGAAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAg < 4:254397/150‑1 (MQ=255) ttGACGTCCATTTCTCCTTCGCTACTGCAAAATATCAAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAg < 4:758560/150‑1 (MQ=255) tggACGTCCATTTCTCCTCCGCTACTGCAAAATACCCAATAGCCAGGGCAATAGCCACAATGACGAAAATGAGGTTTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAg < 1:1228469/148‑1 (MQ=255) gACGTCCATTTCTCCTTCGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGaa > 4:1720613/1‑150 (MQ=255) gACGTCATTTTCTCCTTCGCTACTGCCAAACACCCAAAACCCGGGGAAATACCCAAAATGGCGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGaaa < 4:529268/151‑1 (MQ=255) aCGTCCATTTCTCCTTCGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAAc > 1:395098/1‑151 (MQ=255) aCGTCCATTTCTCCTTCGCTACTGCCAAATACCCAATAGCCAGGGCAATAGCCACAATGACGAAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGaa < 1:1210963/149‑1 (MQ=255) tCCATTTCTCCTTCGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACat < 4:224262/150‑1 (MQ=255) ctcCTTCGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTAttt > 3:468009/1‑151 (MQ=255) ctcCTTCGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTAttt > 4:508297/1‑151 (MQ=255) ctcCTTCGCTACTGCCAAATATCCAATAGCCAGGGAAATAGCCACAATGACGGAAATGATGATTGTCATTTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACattattat < 2:351961/149‑1 (MQ=255) ccTTCGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTc > 1:1069602/1‑151 (MQ=255) ccTACGCTCCGGCAAAATATCCAAGACCCAGGGCAATAGCCAAAAGGACGAAAAGGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTAttt < 2:311833/149‑1 (MQ=255) ttCGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCt > 1:1254882/1‑150 (MQ=255) ccaaCTGCAAAAAATAAAATAGCCGGGCCAATAGCCCGAAGGCGGGAAATGATAGTTGTCTTCTTGCCACGCCACAACTGCACGAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACattattatt < 3:82476/140‑1 (MQ=255) tACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACtctc > 1:1777182/1‑151 (MQ=255) tACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACtctc > 2:416944/1‑151 (MQ=255) aCTGCCAAATACCCAATAGCCAGGGAAATGGCAAAAATGCCGAAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTActct < 4:234745/149‑1 (MQ=255) aaaTTTCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCtcat < 1:1415673/146‑1 (MQ=255) aaaTATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCtcat < 4:378103/146‑1 (MQ=255) aaaTATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCAtt > 4:1563952/1‑150 (MQ=255) aaaTATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCAtt > 1:424940/1‑150 (MQ=255) aaaTATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTa < 4:810977/151‑1 (MQ=255) aaaTACCCAATAGCCAGGGCAATAGCCACAATGACGAAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCtca < 4:1064343/145‑1 (MQ=255) aaTACCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTAc < 4:169412/151‑1 (MQ=255) atatCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTAcc > 3:52918/1‑151 (MQ=255) atCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCt > 2:91278/1‑151 (MQ=255) tCCAATAGCCAGGGCAATAGCCACAATGGCGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCt > 1:945318/1‑150 (MQ=255) aaTAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACt > 1:1527728/1‑151 (MQ=255) aGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGAc > 4:1383886/1‑151 (MQ=255) cAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACgg > 4:1008435/1‑150 (MQ=255) gggAAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGa < 4:1250803/149‑1 (MQ=255) ggCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAAt < 1:537643/151‑1 (MQ=255) aaTAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAAttt < 4:1844852/150‑1 (MQ=255) aaTAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTc < 1:934227/151‑1 (MQ=255) aaTAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTc > 4:180092/1‑151 (MQ=255) aaTAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTc > 1:1158092/1‑151 (MQ=255) aTAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTcc > 4:1310709/1‑151 (MQ=255) tAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTcc > 1:1282129/1‑150 (MQ=255) aGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCa > 1:1640717/1‑150 (MQ=255) ccACAATGACGAAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGt < 4:195332/151‑1 (MQ=255) acaATGACGGAAATGATGTTTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCaa < 4:477692/147‑1 (MQ=255) aaTGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCg > 4:1187509/1‑150 (MQ=255) aaTGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGc > 4:558940/1‑151 (MQ=255) tGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCAt > 2:511774/1‑151 (MQ=255) cGGAAATGATGATTGTCATCTCGCCACGCCGCACCTCCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAg > 2:102891/1‑150 (MQ=255) aaaTGATGTTTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGt < 1:22302/148‑1 (MQ=255) aaaTGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGttt > 4:520921/1‑150 (MQ=255) aaaTGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTa < 3:151070/151‑1 (MQ=255) aaaTGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTa < 2:468025/151‑1 (MQ=255) tGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATcc > 1:577598/1‑151 (MQ=255) cATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAg > 3:400302/1‑134 (MQ=255) cATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCt < 4:144649/149‑1 (MQ=255) aTCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGt > 4:1535882/1‑151 (MQ=255) tCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTg > 3:103636/1‑151 (MQ=255) gccacgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGaa < 4:1162766/149‑1 (MQ=255) ccacgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGa < 1:1719172/147‑1 (MQ=255) ccacgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAAt < 3:340141/149‑1 (MQ=255) ccacgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGc > 1:30642/1‑151 (MQ=255) acgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCta < 3:244583/151‑1 (MQ=255) cgccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCtat > 1:1854130/1‑151 (MQ=255) ccacAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAg < 2:142682/151‑1 (MQ=255) cacaACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAgg > 4:1573108/1‑151 (MQ=255) aCTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATaa < 1:655492/151‑1 (MQ=255) gCACTAGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTg < 4:680904/151‑1 (MQ=255) aGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATaaa < 4:665690/151‑1 (MQ=255) aGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATaaa < 4:1663550/151‑1 (MQ=255) aGTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATa < 4:1047366/149‑1 (MQ=255) gTAAATCAATCAAATCAATCTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATaaaa < 3:121357/151‑1 (MQ=255) atcaatcaaatcaatcTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAaata > 4:1481960/1‑150 (MQ=255) caatcaaatcaatcTGTTCCGGTTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATg < 4:700048/151‑1 (MQ=255) atcaaatcaatcTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATGa > 1:1645701/1‑150 (MQ=255) caaatcaatcTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGGATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATGAAtt > 4:110404/1‑151 (MQ=255) aaatcaatcTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATGAAttg > 4:360344/1‑151 (MQ=255) aatcaatcTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATGAAttgt < 1:1917771/151‑1 (MQ=255) atcaatcTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATGAAttgtt < 2:222981/151‑1 (MQ=255) atcaatcTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATGAAttgtt < 1:362803/151‑1 (MQ=255) caatcTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATGAATtgttgt < 1:18966/151‑1 (MQ=255) caatcTGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATGAATtgttgt < 4:725737/151‑1 (MQ=255) tGTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATGAATTGTTGTgta > 4:1272202/1‑149 (MQ=255) gTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATGAATTGTTgtgt < 4:674653/147‑1 (MQ=255) gTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATGAATTGTTGTgtaag < 1:1532310/150‑1 (MQ=255) gTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATGAATTGTTGTgtaag < 1:712988/150‑1 (MQ=255) gTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATGAATTGTTGTgtaa < 1:817659/149‑1 (MQ=255) gTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATGAATTGTTGTgtaa < 1:1119750/149‑1 (MQ=255) gTTCCGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATGAATTGTTGTgta < 4:710875/148‑1 (MQ=255) ccGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATGAATTGTTGTGTAAGTAAc < 1:1856645/151‑1 (MQ=255) ccGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATGAATTGTTGTGTAAGTAAc > 3:365938/1‑151 (MQ=255) cGGATCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATGAATTGTTGTGTAAGTAAc > 4:878340/1‑150 (MQ=255) | AGTGATAATTGCTGTTGACGTCCATTTCTCCTTCGCTACTGCCAAATATCCAATAGCCAGGGCAATAGCCACAATGACGGAAATGATGATTGTCATCTTGCCACGCCACAACTGCACTAGTAAATCAATCAAATCAATCTGTTCCGGGTCATGGTTTTGCCCAGAAACATTATTATTTTCTACTCTCATCATTACCCTAACTGACGGAAATTTCCAAGTCCGCATAGTTTAGCGATAATCCTCGTGAATGCTATAGGATAAGTGATAAAAATAATGAATTGTTGTGTAAGTAAC > NC_000913/2098113‑2098406 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |