Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,522,472 T→C E2E (GAA→GAG)  xapR ← transcriptional activator of xapAB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,522,4720TC100.0% 186.3 / NA 50E2E (GAA→GAG) xapRtranscriptional activator of xapAB
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (18/32);  total (18/32)

CGTGCCGAGTTGATTTTCCAGCTCTTTAATATGAATGCTGAGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGTTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACAATGGATAATATACCCGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGA  >  NC_000913/2522325‑2522618
                                                                                                                                                   |                                                                                                                                                  
cGTGCCGAGTTGATTTTCCAGCTCTTTAATATGAATGCTGAGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTcc                                                                                                                                                 <  2:618039/151‑1 (MQ=255)
    ccGAGTTGATTTTCCAGCTCTTTAATATGAATGCTGAGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATa                                                                                                                                              >  1:540177/1‑150 (MQ=255)
        gTTGATTTTCCAGCTCTTTAATATGAATGCTGAGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTaa                                                                                                                                         <  2:540182/151‑1 (MQ=255)
          tGATTTTCCAGCTCTTTAATATGAATGCTGAGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAg                                                                                                                                        <  2:86735/150‑1 (MQ=255)
          tGATTTTCCAGCTCTTTAATATGAATGCTGAGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAg                                                                                                                                        <  2:430759/150‑1 (MQ=255)
            aTTTTCCAGCTCTTTAATATGAATGCTGAGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGc                                                                                                                                     <  1:121467/151‑1 (MQ=255)
               ttCCAGCTCTTTAATATGAATGCTGAGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTcc                                                                                                                                  >  2:481097/1‑151 (MQ=255)
                 ccAGCTCTTTAATATGAATGCTGAGCGGAGGCTGAGATATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCa                                                                                                                                 <  2:550297/150‑1 (MQ=255)
                 ccAGCTCTTTAATATGAATGCTGAGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCat                                                                                                                                <  1:254593/151‑1 (MQ=255)
                 ccAGCTCTTTAATATGAATGCTGAGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCat                                                                                                                                <  2:404256/151‑1 (MQ=255)
                  cAGCTCTTTAATATGAATGCTGAGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCata                                                                                                                               <  2:81591/151‑1 (MQ=255)
                  cAGCTCTTTAATATGAATGCTGAGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCat                                                                                                                                >  1:71359/1‑150 (MQ=255)
                   aGCTCTTTAATATGAATGCTGAGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCatat                                                                                                                              >  2:642010/1‑151 (MQ=255)
                   aGCTCTTTAATATGAATGCTGAGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCatat                                                                                                                              >  2:3589/1‑151 (MQ=255)
                         ttAATATGAATGCTGAGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATAtaataa                                                                                                                         <  2:16796/150‑1 (MQ=255)
                              atGAATGCTGAGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACAt                                                                                                                   >  2:249114/1‑151 (MQ=255)
                              atGAATGCTGAGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACAt                                                                                                                   <  2:211304/151‑1 (MQ=255)
                                    gCTGAGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTAtt                                                                                                             >  2:579706/1‑151 (MQ=255)
                                       gAGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTa                                                                                                            <  1:15681/149‑1 (MQ=255)
                                        aGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTaa                                                                                                           <  1:410057/149‑1 (MQ=255)
                                          cGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTa                                                                                                       <  1:243209/151‑1 (MQ=255)
                                                  gagaCATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCCTCCGCTACGGCAAGAAAATAACGGAGCAAATTAAGATCTGTTCTGTATACTCGCTCCATAATTAAGTGCGCCATATAATAAATACATCTTATTAAATTATCATgg                                                                                                 <  1:386635/149‑1 (MQ=255)
                                                         atTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGt                                                                                         >  1:645474/1‑150 (MQ=255)
                                                                         gcgcGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGatat                                                                        >  1:516930/1‑151 (MQ=255)
                                                                         gcgcGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGata                                                                         <  1:290599/150‑1 (MQ=255)
                                                                         gcgcGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGat                                                                          <  2:583642/149‑1 (MQ=255)
                                                                           gcgGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATcc                                                                      >  2:122932/1‑151 (MQ=255)
                                                                                cAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGacat                                                                 >  2:52154/1‑151 (MQ=255)
                                                                                  aaaTGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGacatac                                                               >  2:514988/1‑151 (MQ=255)
                                                                                   aaTGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGacataca                                                              <  2:434807/151‑1 (MQ=255)
                                                                                      gCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGAcatacata                                                            <  1:516943/150‑1 (MQ=255)
                                                                                      gCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATaa                                                           <  1:403691/151‑1 (MQ=255)
                                                                                            ctTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAAcaca                                                      >  1:587263/1‑150 (MQ=255)
                                                                                              tCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAAcaca                                                      <  1:453792/148‑1 (MQ=255)
                                                                                              tCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACaa                                                     <  1:209292/149‑1 (MQ=255)
                                                                                                  cTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACAATGGat                                                >  2:489569/1‑150 (MQ=255)
                                                                                                    aCGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACAATGGata                                               <  1:279927/149‑1 (MQ=255)
                                                                                                    aCGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACAATGGata                                               <  2:567477/149‑1 (MQ=255)
                                                                                                    aCGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACAATGGata                                               <  1:332414/149‑1 (MQ=255)
                                                                                                      ggCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACAATGGATAatat                                           <  1:249113/151‑1 (MQ=255)
                                                                                                           gAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCATATATCCGACATACATAAACACAATGGATAATATACCCg                                      <  1:652595/151‑1 (MQ=255)
                                                                                                                 aaCGGAGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACAATGGATAATATACCCGGTAAt                                 <  1:43947/150‑1 (MQ=255)
                                                                                                                      aGCAACTTAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACAATGGATAATATACCCGGTAATACAttt                           <  2:326069/151‑1 (MQ=255)
                                                                                                                            ttAAGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACAATGGATAATATACCCGGTAATACATTTGGTAc                      >  1:364944/1‑150 (MQ=255)
                                                                                                                              aaGATCTGTTCTGTATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACAATGGATAATATACCCGGTAATACATTTGGTACAgg                   <  2:74652/151‑1 (MQ=255)
                                                                                                                                    tgttctgtATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACAATGGATAATATACCCGGTAATACATTTGGTACAGGAATAg              >  1:350711/1‑150 (MQ=255)
                                                                                                                                       tctgtATACGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACAATGGATAATATACCCGGTAATACATTTGGTACAGGAATAGGCa           >  2:30698/1‑150 (MQ=255)
                                                                                                                                           tataCGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACAATGGATAATATACCCGGTAATACATTTGGTACAGGAATAGGCAAgc        <  1:522919/149‑1 (MQ=255)
                                                                                                                                              aCGCGCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACAATGGATAATATACCCGGTAATACATTTGGTACAGGAATAGGCAAGCGCACg   >  1:27792/1‑151 (MQ=255)
                                                                                                                                               cgcgCTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACAATGGATAATATACCCGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGa  <  1:202470/151‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
CGTGCCGAGTTGATTTTCCAGCTCTTTAATATGAATGCTGAGCGGAGGCTGAGACATATTTAAACGCGCTGCTGCGCGGCCAAAATGCAACTCTTCCGCTACGGCAAGAAAATAACGGAGCAACTTAAGATCTGTTCTGTATACGCGTTCCATAATTAAGTGCTCCATATAATAAATACATCGTATTAAATTATCATGGCATAAAGTATTTCACCACCAGATATCCGACATACATAAACACAATGGATAATATACCCGGTAATACATTTGGTACAGGAATAGGCAAGCGCACGA  >  NC_000913/2522325‑2522618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑