| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 573,409 | 0 | C | A | 41.3% | 166.7 / 39.3 | 93 | S13R (AGC→AGA) | rusA | DLP12 prophage; endonuclease RUS |
| Reads supporting (aligned to +/- strand): ref base C (48/6); new base A (1/37); total (49/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.91e-18 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACGAAATCGACCGCCGCACGCATTTTGTTGACGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGCCTGGCTATGCCTGTGAAAATCCGCATTGAGTGCCAC > NC_000913/573259‑573556 | acgaAATCGACCGCCGCACGCATTTTGTTGACGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGc < 4:1097798/151‑1 (MQ=255) tgaAATCGACCGCCGCACGCATTTTGTTGACGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGc > 1:26319/2‑150 (MQ=255) aaTCGACCGCCGCACGCATTTTGTTGACGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATAACTACAGCATCACATTACCCTGG‑CCTCC‑GAGCaat > 2:1508955/1‑150 (MQ=255) aTCGACCGCCGCACGCATTTTGTTGACGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCaata > 1:202576/1‑150 (MQ=255) tCGACCGCCGCACGCATTTTGTTGACGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCaataat > 3:423974/1‑151 (MQ=255) gACCGCCGCACGCATTTTGTTGACGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATc > 1:415469/1‑150 (MQ=255) gACCGCCGCACGCATTTTGTTGACGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCg > 2:50590/1‑151 (MQ=255) gACCGCCGCACGCATTTTGTTGACGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCg > 1:249255/1‑151 (MQ=255) ccgccgCACGCATTTTGTTGACGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCt > 2:1231377/1‑151 (MQ=255) cgccgcACGCATTTTGTTGACGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCt > 2:890964/1‑150 (MQ=255) gccgcACGCATTTTGTTGACGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑t > 1:222306/1‑151 (MQ=255) ccgcACGCATTTTGTTGACGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑tt < 1:144887/151‑1 (MQ=255) ccgcACGCATTTTGTTGACGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑tt > 4:708301/1‑151 (MQ=255) acgcaTTTTGTTGACGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCg > 4:1585237/1‑151 (MQ=255) caTTTTGTTGACGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGcc > 2:1224058/1‑150 (MQ=255) tgttgACGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAAt > 2:1392741/1‑150 (MQ=255) ttgACGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATcg > 3:44141/1‑150 (MQ=255) gACGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCgg > 2:1552012/1‑151 (MQ=255) aCGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCggg > 2:840080/1‑151 (MQ=255) gtggaatataaaaaaGAATGCGCGCTGGAAGGTAGGGAAAAAACACAGGTTTTCGGGCTGAAAGGGGGGT‑TTATT‑AG‑GGCGTGAATACCTACAGCACCACATTCCCCGGG‑CCCCG‑GAGAAATAATCTCTT‑TTCCCGCCATAATCGCgg < 2:1163713/137‑1 (MQ=255) gCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGgcg > 3:164430/1‑151 (MQ=255) ggATATAAAAAAGAAGGCGGGTGGGAAGTTAGGGGGAAAACACAGGTT‑TTTGGGTTAAAGGGGGGGTTTATT‑AG‑GGCGTAAATCCCTACAGCATCACATTCCCCGGC‑CCCCC‑GAGAAATAACCGCTA‑TTACCGCCATAATCGCGGgcgc < 4:758437/149‑1 (MQ=255) gattaaaaaaaaGAAGGCGCGGGAAAAGGTAGGGCGAAAACACGGGTTATCGGGAAGAAAGAGGGGT‑TTATA‑AA‑GGCGTAAAT‑CCCACCACCCCCCATTCCCCCGGCCCCCC‑GACCAATAACCCCTA‑TTACCGCCATAATCGCgg < 2:107098/137‑1 (MQ=255) gATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGcgca‑c > 3:269080/1‑150 (MQ=255) taaaaaaGAAGGCGCGCGGGAGGGTATGGGGAAAACACGGTTTATCTGGCTAAAAGGGGGGT‑TTATT‑AA‑GGGGTGAATCCCTACAGCATCACATTCCCCTGG‑CCCCC‑GAGAAATAATCGTTT‑TTACCGCCATAATCGCGGGcgca‑cgc < 3:222321/145‑1 (MQ=255) tGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGca‑cgcacg > 1:415152/1‑151 (MQ=255) tGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGca‑cgcacg > 4:310755/1‑151 (MQ=255) gCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGt > 4:1437146/1‑151 (MQ=255) aaaaaaaAGGCGCGCGGGAAGGTGGGGTGAAAACACTGTTTTTCGGGTGGAAAGGGGGGT‑TTTTT‑AA‑GGAGGAAATACTTCCAGCACCACATTCCCCTGT‑CCCCA‑AAGAAATACACGTTA‑TTCCCGCCATAATCGCGGGcgca‑cgc < 2:1310678/145‑1 (MQ=255) aaaaaGAAGGCGGGCGGGAAGGTAGGGGGAGAACCCAGTTTATCTGGCGAAAAGGGGGGT‑TTATT‑AG‑GGCGTAAATCCCTACAGCATCACATCCCCCTGC‑CCCCG‑GAGAAATATCCGTTT‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTc < 3:97821/150‑1 (MQ=255) aaaaGAATGCGCGTTGGAAGGTATGGCGAGAACACGGTTTATGTGGCTGAAGGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACACCATCACATTACCCTGG‑CCTCC‑GACCAATAATCGCTA‑TTACCGCCATAATCGCGGGcgca‑cg < 2:1573165/144‑1 (MQ=255) aaaaGAATGCGCGGGGAAAGGTAGGGGGAAAACACAGTTTATCTGGCTGAAGGGGGGGT‑TTATA‑AG‑GGCGTAAATCCCTCCACCACCACATCCCCCTGC‑CCTCC‑GAGCAAAAATCTTTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCa < 1:442836/151‑1 (MQ=255) aaaaGAAGGCGGGCGGAAAGGAAGGGAAAAAACCCAGTTTATCTGG‑GAAAAGGGGGGG‑TTTTTGAA‑GGGGTAAATCCCCACAGCATCACATTCCCCGGC‑CCACG‑GGAAAATAATCGATA‑TTGCCGCCATAATCGCGGGcgca‑cgca < 2:840117/146‑1 (MQ=255) aaaGAATGCGCGCTGGAAGGTAGGGCGAGAACCGAGGTTGTCGGGAAGAAAGGGGGGT‑TTATT‑AG‑GGCGTTAATCCCTTCAG‑ATTATCCTCCCCCCG‑CCGCCAGAGAAAAAATGGCTT‑TCACCGCCATAATCGCGGGCGCA‑CGCACGTCAg < 2:1018410/151‑1 (MQ=255) aaTGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAgcgc > 2:1447652/1‑150 (MQ=255) cgggAAGGTAGGGCGAAAACCGAGGTTATGGGGAAAAAAGGGGGGT‑TTATA‑AG‑GGAGAAAATTCTTACAGCAACTCTTCCCCTTGC‑CCTCC‑GAGAAATAATCGTTT‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGggc < 3:202590/148‑1 (MQ=255) gAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGggcaggc > 3:138716/1‑151 (MQ=255) aGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCAt > 4:1647265/1‑151 (MQ=255) ggTATGGCGAAAACACGGTTTATCTGGCTGAAAGGGGGGG‑TTATA‑AA‑GGCGTAAATCCCTCCACCATCACATTCCCCTGC‑CCTCA‑GACAAAAAACCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGggcaggc < 4:1593113/148‑1 (MQ=255) tATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GTGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATAcc > 1:469820/1‑151 (MQ=255) tATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATAcc > 1:272382/1‑151 (MQ=255) ggggagaACACAGTTTATGTGGCTGAAAGGGGGGT‑TTATT‑AA‑GGGGGAAATCCCTACAGCACCACTTCCCCCGGC‑CCTCC‑GACCAATAATCGTTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATa < 2:1512090/143‑1 (MQ=255) ggagaaaccacaGTTTATCGGGTGGAAAGGGGGGT‑TTATT‑AA‑GGCGTAAATCCCTACAGCACCACATTCCCCGGC‑CCCCC‑GAAAAAAAATCCTTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATAc < 4:630366/139‑1 (MQ=255) cGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGAt > 2:720328/1‑151 (MQ=255) acacAGGTTATCGGGCAAAAGGGGGGGG‑TTATA‑AG‑GGCGTAAACCCCCACACCACCACATCCCCCGGC‑CCCCC‑GAGAAAAAACCTCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAAc < 2:150406/149‑1 (MQ=255) acaGGTTATCTGTATGAAAGGGGGTT‑TTATA‑AA‑GGCGTGAATCCCCACAACATCCCTTTCCCCTGC‑CCCCG‑GAGAAATACTCGCTT‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATa < 2:1399356/145‑1 (MQ=255) caGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGc > 2:1162594/1‑151 (MQ=255) ttctgcggCTGAAAGGGGGTG‑TTTAT‑AA‑GGTGTGAATCCCGAATCTATCACTTCCCCGTCT‑CCACA‑AAGCAATAAAAGGTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATCCCGCGATAACGTc < 1:144578/139‑1 (MQ=255) ttatttggggaaaaGGGGGGG‑TTAAT‑AG‑GCGGTAAATCCCCACACCACCACTTCCCCGTGG‑CCCCC‑GACAAATATGCCCTA‑TCGCCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGtt < 2:1595049/134‑2 (MQ=255) ttATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGccc > 2:1620642/1‑149 (MQ=255) ttATCTGGCTAAAAGAGGGGG‑TTATT‑AG‑GGCGTAAATCCCTACAGCATCACATTCCCCTGG‑CCCCG‑GAGAAATAATCGTTT‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGccc < 3:26321/149‑1 (MQ=255) tATCTGGCTGATAGCGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGTGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGa > 2:377838/1‑150 (MQ=255) aTCGGGCTAAAAG‑GGGGG‑TTTTT‑AAGGGCGAGAAACCCCACAGCACCACTTCCCCCGGG‑CCCCG‑GACAAATAGCCGTTT‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAAt < 2:950433/151‑1 (MQ=255) gtgtGAAAGAGGGGT‑TTATA‑AG‑GGCGTAATTCCCCACAGCAACCCATCCCCCTGC‑CCCCG‑GAGAAAAAACATTTA‑TTTCCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATc < 4:1280587/145‑1 (MQ=255) ggCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCAtt > 2:945237/1‑151 (MQ=255) cTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTa > 4:1015029/1‑150 (MQ=255) tGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTaa > 2:768196/1‑150 (MQ=255) aaaGGGGGGT‑TTATT‑AG‑GGCGTAAATCCCTACAACATCACATTCCCCTGC‑CCCCC‑GACAAATAATCGTTT‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTa < 3:272398/147‑1 (MQ=255) aaaGGGGGGG‑TTATT‑AA‑GCCGTAAAACCCTACAACACCCCATTCCCCTGG‑CCTCC‑GAGAAAAAATCGTTT‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTaa < 3:379741/148‑1 (MQ=255) ggggggt‑TTATA‑AA‑GGCGTAAATCCCTACAGCATCCCATTCCCCTGC‑CCCCC‑GAGAAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACg < 2:1009545/148‑1 (MQ=255) gagGGGT‑TTATT‑AA‑GGCGTAAATCCCAACACCATCACATTCCCCTGC‑CCCCC‑GACAAATAACCCTTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACg < 4:524104/150‑1 (MQ=255) ggggt‑TTATT‑AG‑GGCGTAAATCCCAACAGCATCACATTCCCCGGG‑CCCCC‑GAAAAAAAACCGCTA‑TTCCCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCa < 1:228356/150‑1 (MQ=255) ggggt‑TTATT‑AA‑GGCGAAAACCCCTACACCACCACTTCCCCCTGC‑CCCCC‑GAGAAATAACCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCaa < 2:1107810/151‑1 (MQ=255) gggt‑TTATA‑AG‑GGGGTAAATCCCTACAGAACCACATCCCCCGGC‑CCCCC‑GAGAAAAAAGCCTTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAAt < 2:707351/151‑1 (MQ=255) gggt‑TTATA‑AA‑GGGGTAAACCCCACCAGCATCACTTCCCCCGGG‑CCTCG‑GAGAAATAACCGTTA‑TTCCCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAAt < 4:1128560/151‑1 (MQ=255) ttatg‑aA‑GGGGTGATGCCCAACACCATCACATCCCCCTGC‑CCCCC‑GAATAATAGTCGCTC‑TTGCCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATTCCGCGATAACGTCGCCCGAATCATTAAAAACGCAATg < 2:1448877/148‑1 (MQ=255) ttata‑aG‑GGCGTGAATCCCTACACCATCACATTCCCCTGC‑CCCCC‑GAGAAATAATCGTTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCt < 3:279176/150‑1 (MQ=255) att‑aG‑GGGGTAAATCCCTACACCACCAC‑TTCCCCCGG‑CCCCCGGAAAAATAATCGTTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTgg < 2:35249/150‑1 (MQ=255) att‑aA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTgg > 1:17159/1‑150 (MQ=255) t‑aA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGat > 2:1526238/1‑150 (MQ=255) aa‑GGCGTAAATACCTACACCATCACATCCCCCTGC‑CCCCC‑GAGAAATAATCGTTT‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTgg < 3:146158/147‑1 (MQ=255) aggggtaaaaTCCCTAAAGCATCACATCCCCCGGC‑CCCCG‑GAAAAATACTCCTTT‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTgg < 2:1583283/139‑1 (MQ=255) gCGTAAATACCTACAGCACCACTTTCCCCTGG‑CCTCG‑GAGAAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCgg < 3:245809/151‑1 (MQ=255) cGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGc > 3:434015/1‑151 (MQ=255) gaaattcccTACAGCACCACTTTCCCCGGC‑CCCCC‑GAGAAATAACCGTTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGcc < 4:1372509/144‑1 (MQ=255) gTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGcc > 2:441700/1‑151 (MQ=255) tGAATCCATACAGCATCACATTCCCCGGC‑CCCCC‑GAGAAATAATCCCTA‑TACCCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGc < 4:18038/149‑1 (MQ=255) tGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGCCt > 4:973257/1‑151 (MQ=255) aacccccacacCACCACACTCCCCTCC‑CCCCC‑GACAAATAATCACTA‑TACCCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCg < 2:1165313/138‑1 (MQ=255) aaTCCCTACAGCACCACATCCCCCTGC‑CCCCC‑GAGAAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGCCTgg < 4:1520112/151‑1 (MQ=255) aTACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGCCTGGc > 3:42074/1‑151 (MQ=255) tACCTACAGCATCACATTACCCT‑G‑CCTCCGGAGAATTAAT‑GCTATTTACCGCATTATTCG‑GGGCGGACCGCACGTCAGCGCGGGGGGGCAGGAAACCCGCGTTAAGGCCGCCCGAATCATTAAAAAGGCAAGGCTGGAAATCGGCTTg > 2:1114021/1‑148 (MQ=255) ccaacacCATCACCTCCCCCGCG‑CCCCC‑GAGAAATAATCGTTT‑TTCCCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGCCTGGCTAt < 2:1144449/148‑1 (MQ=255) cAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGCCTGGCTATGCCt > 2:87910/1‑151 (MQ=255) aGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGCCTGGCTATGCCtg > 2:172004/1‑151 (MQ=255) ccATCACATTCCCCGGC‑CCTCC‑AAGAAATAATCGCTT‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGCCTGGCTATGCCtgt < 2:1435348/150‑1 (MQ=255) tCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGCCTGGCTATGCCTGTGa > 2:1508844/1‑150 (MQ=255) caTTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGCCTGGCTATGCCTGTGaaaa > 3:246373/1‑150 (MQ=255) aTTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGCCTGGCTATGCCTGTGAAAATc > 2:520144/1‑151 (MQ=255) tcccccTGG‑CCCCC‑GAGAAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGCCTGGCTATGCCTATGaaaa < 4:122143/145‑1 (MQ=255) ccccggcccccc‑GAGAAATAATCTTTA‑TAACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGCCTGGCTATGCCTGTGAAAATCCGc < 4:1449462/141‑1 (MQ=255) ccTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGCCTGGCTATGCCTGTGAAAATCCGCAt > 4:78209/1‑151 (MQ=255) ccTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGCCTGGCTATGCCTGTGAAAATCCGCATTGAGt > 4:1126309/1‑151 (MQ=255) cTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGCCTGGCTATGCCTGTGAAAATCCGCATTGAGt > 2:1023288/1‑150 (MQ=255) aGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGCCTGGCTATGCCTGTGAAAATCCGCATTGAGTGCcac > 1:141310/1‑150 (MQ=255) | ACGAAATCGACCGCCGCACGCATTTTGTTGACGCTGGATATGCAAAAGAATGCGCGCTGGAAGGTATGGCGAGAACACAGGTTATCTGGCTGAAAGAGGGGG‑TTATT‑AA‑GGCGTGAATACCTACAGCATCACATTACCCTGG‑CCTCC‑GAGCAATAATCGCTA‑TTACCGCCATAATCGCGGGCGCA‑CGCACGTCAGCGCAGAGGGGCAGGCATACCGCGATAACGTCGCCCGAATCATTAAAAACGCAATGCTGGATATCGGCCTGGCTATGCCTGTGAAAATCCGCATTGAGTGCCAC > NC_000913/573259‑573556 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |