| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 903,872 | (G)5→6 | intergenic (‑138/+80) | artP ← / ← ybjP | arginine ABC transporter ATPase/lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 903,867 | 1 | . | G | 97.4% | 138.4 / ‑2.5 | 39 | intergenic (‑133/+85) | artP/ybjP | arginine ABC transporter ATPase/lipoprotein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (21/17); total (21/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.62e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.96e-01 | |||||||||||
TAATTGAATACTCATTGACACTCGTATACTGGCAGTCTGATAGCTATTGAGGTCGAAGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑C‑GGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCT > NC_000913/903720‑904009 | tAATTGAATACTCATTGACACTCGTATACTGGCAGTCTGATAGCTATTGAGGTCGAAGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑C‑ggg > 1:674709/1‑151 (MQ=255) aaTTGAATACTCATTGACACTCGTATACTGGCAGTCTGATAGCTATTGAGGTCGAAGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑C‑ggag < 2:600843/151‑3 (MQ=255) aTTGAATACTCATTGACACTCGTATACTGGCAGTCTGATAGCTATTGAGGTCGAAGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑C‑ggggg < 2:590667/151‑1 (MQ=255) ttGAATACTCATTGACACTCGTATACTGGCAGTCTGATAGCTATTGAGGTCGAAGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑C‑gggggg > 1:151514/1‑150 (MQ=255) tGAATACTCATTGACACTCGTATACTGGCAGTCTGATAGCTATTGAGGTCGAAGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑C‑gggggg < 2:6768/150‑2 (MQ=255) gAATACTCATTGACACTCGTATACTGGCAGTCTGATAGCTATTGAGGTCGAAGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑C‑ggggggcg > 2:622781/1‑148 (MQ=255) gAATACTCATTGACACTCGTATACTGGCAGTCTGATAGCTATTGAGGTCGAAGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑C‑ggggggcg > 1:422593/1‑148 (MQ=255) gACACTCGTATACTGGCAGTCTGATAGCTATTGAGGTCGAAGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGa < 1:177529/151‑1 (MQ=255) acTCGTATACTGGCAGTCTGATAGCTATTGAGGTCGAAGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGc > 2:361028/1‑150 (MQ=255) cTGGCAGTCTGATAGCTATTGAGGTCGAAGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCg > 2:351921/1‑151 (MQ=255) gTCTGATAGCTATTGAGGTCGAAGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTc < 2:15066/151‑1 (MQ=255) gATAGCTATTGAGGTCGAAGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTc < 2:181604/150‑1 (MQ=255) gATAGCTATTGAGGTCGAAGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCa < 2:138056/151‑1 (MQ=255) cTATTGAGGTCGAAGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGaa > 1:204485/1‑150 (MQ=255) aTTGAGGTCGAAGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAAt < 1:584609/150‑1 (MQ=255) gAGGTCGAAGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCg > 2:421434/1‑151 (MQ=255) cGAAGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACa < 2:395090/150‑1 (MQ=255) cGAAGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACa > 2:9927/1‑150 (MQ=255) aGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAAttt > 2:512852/1‑151 (MQ=255) ttGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTAt > 1:99731/1‑151 (MQ=255) ttGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTAt > 1:269752/1‑151 (MQ=255) gACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTAtt < 1:347816/150‑1 (MQ=255) aGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGtt < 1:74580/151‑1 (MQ=255) aGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGtt > 1:27293/1‑151 (MQ=255) tATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAgg > 2:28882/1‑151 (MQ=255) aTGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAgg < 2:586174/150‑1 (MQ=255) aTGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAGGc < 2:114429/151‑1 (MQ=255) tGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGAGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTTGTTGATCa < 1:130952/146‑1 (MQ=255) cAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAGGCGtt < 2:178292/151‑1 (MQ=255) aaTATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAGGCGTTa < 2:638507/151‑1 (MQ=255) cTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAGGCGTTAGCGATTCTCg > 1:351919/1‑151 (MQ=255) cTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAGGCGTTAGCGATTCTCg > 2:600729/1‑151 (MQ=255) taaaagttaaaagCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAGGCGTTAGCGATTCTCGATg > 2:487630/1‑151 (MQ=255) taaaagCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAGGCGTTAGCGATTCTCGATGGACTGAc > 1:477957/1‑151 (MQ=255) aaagcaaagcGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAGGCGTTAGCGATTCTCGATGGACTGACgg > 2:283048/1‑151 (MQ=255) aaagcaaagcGCATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAGGCGTTAGCGATTCTCGATGGACTGACgg < 2:509861/151‑1 (MQ=255) cacagcGCATTATTCAATAAAGATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCTAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGCTCAAGGCGATAGCGATTCTCGATCGACTGACGGAGc > 1:617024/4‑150 (MQ=255) cgcATTATTCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTAccc < 1:569791/151‑1 (MQ=255) attattCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACccgcc > 1:418934/1‑151 (MQ=255) attCAATAAACATAGCACAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGt > 2:327251/1‑150 (MQ=255) aaaaaaCATAGCAAAAAAAAAGG‑GGGGGCGGTGGTGGGCGAGAATAAATGTCGGCATTCCTCACAAAATGCCGGAAATTTTGCGGGGTTTATTGTTTGATAAGGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCAt < 1:143838/148‑1 (MQ=255) aCATAGCAAAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGTTTTATTGGTTGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACg < 2:208451/151‑1 (MQ=255) cATAGCAAAAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCTTCCCTCACGAAATGCCGAACATTTTACGGGTTTTTTTGTTTGATCAAGGCTTTAGCGATTCTCGTTGGACTGCCGGAGCGTACCCGCCGTGGCATGAACGc < 2:572665/151‑1 (MQ=255) cacaAAATAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCg > 1:552695/1‑151 (MQ=255) aaaaTAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCt > 1:27214/1‑151 (MQ=255) aaaTAA‑CGGGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCt > 2:43411/1‑150 (MQ=255) | TAATTGAATACTCATTGACACTCGTATACTGGCAGTCTGATAGCTATTGAGGTCGAAGATAGTACCTTTGACAGAATAATTATGCAATATTTCTGCTTTAAAAGTTAAAAGCAAAGCGCATTATTCAATAAACATAGCACAAAATAA‑C‑GGGGGCGGTGGTCGGCGAGCATAAATGTCGGCATTCCTCACGAAATGCCGGACAATTTACGGGGTTTATTGGTTGATCAAGGCGTTAGCGATTCTCGATGGACTGACGGAGCGTACCCGCCGTGGCATGAACGCTACCGCCT > NC_000913/903720‑904009 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |