| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,825,056 | 0 | G | A | 48.6% | 54.3 / 58.1 | 70 | intergenic (‑119/+84) | ves/spy | cold‑ and stress‑inducible protein/periplasmic ATP‑independent protein refolding chaperone, stress‑induced |
| Reads supporting (aligned to +/- strand): ref base G (33/3); new base A (0/34); total (33/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.16e-17 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GACATTTTACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATT > NC_000913/1824909‑1825205 | gACATTTTACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTgagaagagaa > 2:603816/1‑150 (MQ=255)gACATTTTACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGagaaa < 1:847064/151‑1 (MQ=255) cATTTTACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGagaaaag < 4:6175/151‑1 (MQ=255) cATTTTACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGagaaaag < 1:135975/151‑1 (MQ=255) cATTTTACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGagaaaag < 2:721120/151‑1 (MQ=255) cATTTTACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGagaaa > 2:573524/1‑149 (MQ=255) aTTTTACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGagaaa > 1:398105/1‑148 (MQ=255) ttACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGagaaaagaaa < 4:310259/150‑1 (MQ=255) aCGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAAcc < 1:913888/151‑1 (MQ=255) cGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAAccg < 1:320555/151‑1 (MQ=255) cGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTCTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAAccg > 4:61655/1‑151 (MQ=255) tCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATc > 1:599554/1‑151 (MQ=255) acAAAGTATTCCATACTCGCTCCCGTCCCCTTCTTTTCATTGTTATCGTTCATA‑TAACCGAGGATGGCTATCGGCAT‑CTCGGGTGCTTCACGTTAGTAGAGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGATCACCGCCGAt > 2:419771/2‑150 (MQ=255) aaattttcccATACTCGCTCCCGGCCCTTTCTTTTCATTGTTATCGTTCAGG‑TAACCGGGGATGTTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑TTTTTTTTACAA‑CTGTTTGAGAAGAAAAAAAAAAACCGCCGATc < 2:943977/141‑1 (MQ=255) aaaGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAAAAAAGAAAAccgccg < 4:83992/146‑1 (MQ=255) ttCCATCCTCCCCCCCGGCCCGTTTTTTTCTTTTTTATCGTTCAGG‑TACCCGGGGATGGTTATCGGCAA‑CTGGGGTGATTTAGGTTAGTGGTGATCAGG‑TTTTTTTAACAA‑TTGTTTGAAAAAAAAAAAAAAAACCGCCGATCCTGTCCa < 1:819608/150‑1 (MQ=255) ttCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGCTGGTTATCGGCAA‑CTCGGGGGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGCTCCTGTCCAc > 2:634284/1‑151 (MQ=255) tCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCAcc > 1:107010/1‑151 (MQ=255) ccATCCCCGCCCCCGGCCCTTTTTTTTCATTTTTATCGTTAAGG‑TACCGGTGGATGTTTATCGGCAA‑CGGGGGTGTTTTCCGTTAGTGTTGATCAGT‑TTTTTTTTACAA‑CTTTTAGAAAAAAAAAAAAAAAACCGCCGATCCTGTCCa < 1:953290/148‑1 (MQ=255) tCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTAc > 1:747889/1‑151 (MQ=255) tCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTAc > 1:522103/1‑151 (MQ=255) cGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACt > 1:1058996/1‑151 (MQ=255) cccGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCa > 1:127631/1‑150 (MQ=255) ccGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCa > 3:235204/1‑149 (MQ=255) tggCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAgg > 2:422395/2‑151 (MQ=255) cGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTg > 4:11919/1‑151 (MQ=255) gTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTg > 2:41359/1‑150 (MQ=255) gttttCATTGTTATCGTTCAGG‑TAACCGTGGCTGGTTATCGGCAA‑CTCGGGGGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCAACCGCATTACTGCAAGGTAGTGGAc > 2:112735/2‑150 (MQ=255) ttttCTTTGTTATCGTTCAGG‑TACCCGTGGATGTTTGTGGGCAA‑CGGGTTTTTTTTACGTTAGGGGTCACCGGG‑TTTTTTTAAAAG‑CTGTTGGAAAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACa < 2:323590/150‑1 (MQ=255) ttttCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACa > 2:1079206/1‑150 (MQ=255) ttGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACcgg > 1:1199943/1‑151 (MQ=255) tgtttccttCAGGTTAACGGGGGTTGGTTATCGACAA‑CTGGGGTTTTTTAGGTTAGTGGTCA‑CCGG‑TTTTTTTTAAAAGCTGTTGGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACcgg < 2:189926/143‑1 (MQ=255) ttttCGTGCAGG‑TAACGGGGGAGGGTTATCGGCAC‑CCGGGGTAATTTCCGTTGGTGGTAATCGGT‑TTTTTTTCACAT‑TTTTTTGAAAAGAAAAAAAAAACCCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACcggcg < 1:766168/147‑1 (MQ=255) ttATGGTTCAGG‑TAACGGGAGATGGTTATCGACAC‑GGGGGTTTATTTTCGTGAGTGTTGACGGGG‑TTTTTTTCACTA‑CTGTTAGAAAAAAAAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGa < 2:503518/144‑1 (MQ=255) ttATCGTTCAGT‑TACCCGTGGTTGTTTATCGGCAA‑CTGGGGTGATTTACGTTAGTGGTGATCAGG‑TTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACcggcg < 4:134270/150‑1 (MQ=255) tATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACcggcgg > 3:366835/1‑150 (MQ=255) ttgttaagttatctgTGGAT‑GTTTTCGGGAATCTGGGGTGTTTTTCGTGAGTGGTAATTAGG‑TTTTTTTTACAA‑GTGTTAGAAAAGAAAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTc < 1:507611/136‑1 (MQ=255) cGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCtt > 1:308142/1‑151 (MQ=255) g‑TACCCGTGGTTGTTTTTCGACAT‑CTGGGTTGTTTTGCTTTGGTGGT‑ATCCGGTTTTTTTTTACAT‑CTTTTTGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGttt < 2:1200046/150‑1 (MQ=255) aacGTGGATGTTTATGCGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAACACCGCCGAACCTGTCCAACGCATTACTGTAAGGTAGTGGACAAGAACGGCGGTCTTTAGcttt > 3:375975/3‑148 (MQ=255) ggTTATCGGCAC‑CTGGGGTGATTTCCGTTAGTGGTGATCAGG‑TTTTTTTTACAA‑CTGTTTGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGaa < 1:782193/148‑1 (MQ=255) ggTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTgga > 2:657224/1‑146 (MQ=255) ggTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGaa > 1:397168/1‑148 (MQ=255) ggCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑TTTTTTTTACAA‑CTGTTGGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTca < 3:109684/151‑1 (MQ=255) gacAA‑CTGGGGTTTTTTGCGTAGGGGGTGATCGGT‑TTTTTTTTCCAG‑TTTTTGGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGattat < 1:1140858/146‑1 (MQ=255) acctggggTGTTTTACGTTAGTGTTGATCGGG‑TTTTTTTTAAAA‑TTGTTTGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTcagca < 1:734049/146‑1 (MQ=255) acctggggTGATTTACGTTGGTGGTGATCAGT‑TTTTTTTAAAAA‑CTGTTGAAGAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTcagc < 1:103104/145‑1 (MQ=255) gggTTATTTACGTTAGTGGTGCTCAGG‑CTTTTTTTACAT‑CTGTTGAAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTcagc < 2:851958/145‑1 (MQ=255) gggTGTTTTCCGTTAGTGGTGATCGGG‑TTTTTTTTACAA‑TTGTTGGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTcagcag < 1:704800/147‑1 (MQ=255) gggTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGtt > 4:425601/1‑149 (MQ=255) gggTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTg > 1:1042031/1‑150 (MQ=255) gTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGc > 2:59206/1‑149 (MQ=255) tttACGTTAGTGGTGATCGGT‑TTTTTTTTACAG‑CTGTTGGAAAAAAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGc < 1:770279/149‑1 (MQ=255) tttACGTGAGGGGTATCCAGG‑TTTTTTTTACAA‑CTGTTGGAAAAAAAAAAAAAAAGCCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGc < 3:341583/149‑1 (MQ=255) taaCGTTGGTGTTGATCAGG‑TTTTTTTTACAA‑CTGTTGGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTcagcag < 2:132512/138‑1 (MQ=255) aCGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCAtttt > 3:267083/1‑151 (MQ=255) aCGTTAGGGGTGATCAGG‑TTTTTTTTACAA‑TTTTTGAAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCAtttt < 1:513925/151‑1 (MQ=255) aCGTGAGTGGTGAACAGG‑TTTTTTTTACAA‑CTGTTGGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCAttt < 1:385204/150‑1 (MQ=255) gTTAGGGGTGTTCGGT‑TTTTTTTTACAG‑CTTTTGGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCAtttt < 1:1255354/149‑1 (MQ=255) ttggggttgACCAGG‑TTTTTTTTACAT‑TTTTTTGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTa < 4:60065/142‑1 (MQ=255) ttATTGGTGACCTGT‑TTTTTTTTACAT‑CTGTTGGAAAAAAAAAAAAAAAGCCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTAc < 1:659049/150‑1 (MQ=255) tAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCCGCAGTTGCAGGCATTTTAcc > 1:548974/1‑150 (MQ=255) ggtggtCGGG‑TTTTTTTTACAC‑CTGTTTGAAAAAGAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCttt < 3:342702/149‑1 (MQ=255) ggtgATCAGG‑TTTTTTTTACAA‑TTTTTAGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTg < 1:66172/151‑1 (MQ=255) ggtgATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTTAGCAGTTGCAGGCATTTTACCtttt > 1:995408/1‑150 (MQ=255) tgatcggtttttttttACAA‑CTGTTGGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGc < 2:537209/141‑1 (MQ=255) aTCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGcccc > 1:182137/1‑149 (MQ=255) aGG‑TTTTTTTTAAAA‑CTTTTTAAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCg < 4:90419/147‑1 (MQ=255) ttttttttACAT‑TTTTTTGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCt < 2:949907/145‑1 (MQ=255) tttttttACAC‑TTTTTTGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTgg < 1:1095969/147‑1 (MQ=255) ttttttaACAA‑CTGTTTAAAAAAAAAAAAAAAACCCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGAc < 3:34894/149‑1 (MQ=255) tttACAA‑TTGTTTGAAAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTTAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCt < 1:27409/150‑1 (MQ=255) ttACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCt > 4:64345/1‑149 (MQ=255) tACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTATTAAGTTTTTTGGCTGAAAGAATATTCAGCAGATGCAGGCATTTTATCTTTTGCCGCTGGAAGTTCTGt > 1:1274161/1‑150 (MQ=255) cAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGt > 1:1042939/1‑148 (MQ=255) tttttGAGAAGAAAAAAAAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGt < 1:257474/142‑1 (MQ=255) ttGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCtt > 1:380220/1‑150 (MQ=255) tGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGGTTTTTGGCTGGAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTtc > 2:1066215/1‑150 (MQ=255) agagaaAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCcaa > 1:479527/1‑150 (MQ=255) agaaaagaaaACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAAtt > 2:569662/1‑151 (MQ=255) | GACATTTTACGCATATCAAAGTATTCCATACTCGCTCCCGGCCCGTTCTTTTCATTGTTATCGTTCAGG‑TAACCGTGGATGGTTATCGGCAA‑CTCGGGTGATTTACGTTAGTGGTGATCAGG‑CTTTTTTTACAA‑CTGTTTGAGAAGAGAAAAGAAAACCGCCGATCCTGTCCACCGCATTACTGCAAGGTAGTGGACAAGACCGGCGGTCTTAAGTTTTTTGGCTGAAAGATTATTCAGCAGTTGCAGGCATTTTACCTTTTGCCGCTGGACGTTCTGTCAGACGCTTCTCAAAATT > NC_000913/1824909‑1825205 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |