Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	41,317	A→G	G205G (GGT→GGC)	caiT ←	putative transporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	41,317	0	A	G	100.0%	198.6 / NA	53	G205G (GGT→GGC)	caiT	putative transporter
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (23/30);  total (23/30)

CCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTACCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTA  >  NC_000913/41169‑41457                                                                                                                                                     |                                                                                                                                             ccccTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGcc                                                                                                                                            >  2:293497/1‑151 (MQ=255) ccccTTTTTGCAGACCGCAAGCGACGAAAATGGCGTTGAGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATTCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCAGCGTGGCCATGCCCAGACTGGTGcc                                                                                                                                            >  2:317848/1‑151 (MQ=255)      ttttGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCAt                                                                                                                                         <  2:465649/149‑1 (MQ=255)          gCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGa                                                                                                                                    >  1:482854/1‑150 (MQ=255)              aCCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATc                                                                                                                               <  1:66636/151‑1 (MQ=255)               ccGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCa                                                                                                                              <  1:479543/151‑1 (MQ=255)                      cGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGcgac                                                                                                                       >  1:508239/1‑151 (MQ=255)                        aCGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGcgacg                                                                                                                      >  2:186953/1‑150 (MQ=255)                         cGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACgag                                                                                                                    <  2:670833/151‑1 (MQ=255)                            aaaTGGCGTTGAGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGATCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGAt                                                                                                                  <  2:897551/150‑1 (MQ=255)                              aTGGCGTTGAGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGa                                                                                                               <  2:802806/151‑1 (MQ=255)                                     tGAGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTc                                                                                                        >  2:86185/1‑151 (MQ=255)                                       aGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTcga                                                                                                      <  1:819319/151‑1 (MQ=255)                                       aGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTcg                                                                                                       >  1:925010/1‑150 (MQ=255)                                        ggATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTcgac                                                                                                     <  1:1040918/151‑1 (MQ=255)                                         gATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTcgac                                                                                                     <  1:898491/150‑1 (MQ=255)                                          aTAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTcgacga                                                                                                   <  2:30402/151‑1 (MQ=255)                                           tAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGAt                                                                                                  >  1:393053/1‑151 (MQ=255)                                                   cagGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGa                                                                                          <  1:606461/151‑1 (MQ=255)                                                    agGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGaa                                                                                         <  2:920530/151‑1 (MQ=255)                                                        aaTGATGATAGCGTCCAGTTGCAGGGCATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGaaca                                                                                       >  1:848393/1‑149 (MQ=255)                                                         atgatgATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAAcc                                                                                    <  2:870230/151‑1 (MQ=255)                                                          tgatgaTAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAAccc                                                                                   >  1:456308/1‑151 (MQ=255)                                                           gatgatAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGGTGTCGACGATAGTGCCGAACAAccc                                                                                   >  2:593937/1‑150 (MQ=255)                                                             tgatAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCttt                                                                                >  1:527780/1‑151 (MQ=255)                                                                   cGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCgtg                                                                          >  2:482844/1‑151 (MQ=255)                                                                   cGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCgtg                                                                          <  1:1033809/151‑1 (MQ=255)                                                                    gTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCgtgt                                                                         <  1:1042097/151‑1 (MQ=255)                                                                              aGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCt                                                                >  1:103936/1‑150 (MQ=255)                                                                               gggTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTAc                                                              <  2:598849/151‑1 (MQ=255)                                                                                   aTGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAg                                                           <  1:223959/150‑1 (MQ=255)                                                                                           tGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCACCa                                                   <  1:482095/150‑1 (MQ=255)                                                                                           tGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGCGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCAcc                                                    >  2:547007/1‑149 (MQ=255)                                                                                            gCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCACCAgt                                                 <  1:378078/151‑1 (MQ=255)                                                                                                   aacCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGc                                          <  2:136997/151‑1 (MQ=255)                                                                                                          gCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCg                                   <  1:102094/151‑1 (MQ=255)                                                                                                               cacTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCa                              <  1:389341/151‑1 (MQ=255)                                                                                                                 cTCGGTCACCAGCAGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACt                            >  2:963789/1‑151 (MQ=255)                                                                                                                   cGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTc                          >  1:949931/1‑151 (MQ=255)                                                                                                                    ggTCACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTcc                         <  1:596208/151‑1 (MQ=255)                                                                                                                       cACCAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCAtt                      >  2:996950/1‑151 (MQ=255)                                                                                                                          cAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCa                                                      >  2:271952/1‑116 (MQ=255)                                                                                                                          cAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCa                                                      <  1:271976/116‑1 (MQ=255)                                                                                                                          cAGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCAtttt                    >  2:348075/1‑150 (MQ=255)                                                                                                                           aGCGGCGTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGGTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCATTTCCAtttt                    <  2:826721/149‑1 (MQ=255)                                                                                                                              ggcgTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCgg                >  1:923830/1‑150 (MQ=255)                                                                                                                              ggcgTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGa               <  1:500394/151‑1 (MQ=255)                                                                                                                                cgTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGAc              >  1:275534/1‑150 (MQ=255)                                                                                                                                 gTGGCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACa             >  2:446182/1‑150 (MQ=255)                                                                                                                                   ggCAAGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACaaa           <  2:403178/150‑1 (MQ=255)                                                                                                                                      aaGGCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAaagaag       <  2:238443/151‑1 (MQ=255)                                                                                                                                         gCCCAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAaagaagaag    <  1:87039/151‑1 (MQ=255)                                                                                                                                           ccAGACTGGTGCCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTa  <  1:18395/151‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                             CCCCTTTTTGCAGACCGCAAGCGACGCAAATGGCGTTGAGGATAATCCAGCAGGTAATGATGATAGCGTCCAGTTGCAGGGTATGCGGAATGCCAAACAACCATTGCATACACTCGGTCACCAGCGGCGTGGCAAGGCCCAGACTGGTACCCATCGCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGGCGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTA  >  NC_000913/41169‑41457

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑