Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913987,4940TG41.6% 215.7 / 25.3 114intergenic (‑512/+91)ompF/asnSouter membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
Reads supporting (aligned to +/- strand):  ref base T (7/59);  new base G (47/0);  total (55/59)
Fisher's exact test for biased strand distribution p-value = 1.12e-24
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 115 total aligned reads displayed.

TCTTTCAGACATCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTA‑AATTAGAAGCTGGCGTTACGCGGAGTACGTGGGAACGGAATCACATCACGTACGTTTTGC  >  NC_000913/987346‑987642
                                                                                                                                                    |                                                                                                                                                         
    tCAGACATCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTggca                                                                                                                                                      >  4:399873/1‑147 (MQ=255)
     cAGACATCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAAt                                                                                                                                                    <  3:200711/151‑1 (MQ=255)
     cAGACATCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCcaa                                                                                                                                                     >  2:841115/1‑150 (MQ=255)
        aCATCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑a                                                                                                                                                <  2:533996/151‑1 (MQ=255)
        aCATCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑a                                                                                                                                                <  2:1384941/151‑1 (MQ=255)
        aCATCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑a                                                                                                                                                <  3:1342274/151‑1 (MQ=255)
          aTCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGccgaaa                                                                                                                                                   >  2:133800/1‑142 (MQ=255)
          aTCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGaaa                                                                                                                                                     >  3:595823/1‑145 (MQ=255)
          aTCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCAAATAG‑a                                                                                                                                                >  3:454712/1‑149 (MQ=255)
           tCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCaaaaaaaat                                                                                                                                               >  4:420661/1‑144 (MQ=255)
            ccAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGc                                                                                                                                           <  2:73185/151‑1 (MQ=255)
             cAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGGTGATCGTTATGGCGGGGGTGGAAATaaaatt                                                                                                                                              >  2:360207/1‑144 (MQ=255)
              aGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCtt                                                                                                                                         <  2:843757/151‑1 (MQ=255)
                  tGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCaaaaaaaattctttat                                                                                                                                        >  1:456707/1‑137 (MQ=255)
                     cAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTaa                                                                                                                                  <  2:1121738/151‑1 (MQ=255)
                      aaaaaaTAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTGGTAAAttaaattcttgtctt                                                                                                                                      >  2:186074/1‑134 (MQ=255)
                          aaTAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCAAAAAG‑A‑TTGCTTTACTTtaaaaa                                                                                                                              >  2:350533/1‑150 (MQ=255)
                           aTAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTaacaaaca                                                                                                                            <  3:133817/151‑1 (MQ=255)
                                aTGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATaa                                                                                                                       <  3:1191854/151‑1 (MQ=255)
                                aTGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATa                                                                                                                        <  4:456702/150‑1 (MQ=255)
                                aTGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATa                                                                                                                        <  2:1346580/150‑1 (MQ=255)
                                aTGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATa                                                                                                                        <  2:123713/150‑1 (MQ=255)
                                 tGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAA‑A‑ATGTTTTTCTTAAAAAAAAGaaaa                                                                                                                       >  3:891022/1‑150 (MQ=255)
                                  gAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAc                                                                                                                      <  3:630114/150‑1 (MQ=255)
                                  gAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGGAAAAA‑A‑TTTCTTTTCTTtacaaaaaaaaaaa                                                                                                                      >  3:1125364/1‑142 (MQ=255)
                                    aaaTTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTg                                                                                                                  <  2:948521/151‑1 (MQ=255)
                                        tgtgCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCAAATAA‑A‑TTGCTTTACTTAACAAACAAATAAA‑tt                                                                                                                   >  2:716718/1‑146 (MQ=255)
                                         gtgCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAg                                                                                                              <  3:191601/150‑1 (MQ=255)
                                         gtgCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGa                                                                                                             <  3:1376900/151‑1 (MQ=255)
                                          tgCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAATAA‑A‑AAGCTTTACTTtacaaaaaaaataactgac                                                                                                                 >  4:427763/1‑134 (MQ=255)
                                           gCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAA‑A‑TTGCTTGACTTAACAAAAAAATAAC‑TTGACAGaa                                                                                                            >  2:826719/1‑150 (MQ=255)
                                              aTTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAg                                                                                                         <  2:1107369/150‑1 (MQ=255)
                                              aTTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGa                                                                                                        <  3:974908/151‑1 (MQ=255)
                                                tAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAt                                                                                                       <  3:881683/150‑1 (MQ=255)
                                                tAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAt                                                                                                       <  3:88467/150‑1 (MQ=255)
                                                 aGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑aa                                                                                                    <  3:1005721/151‑1 (MQ=255)
                                                 aGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑a                                                                                                     <  3:1054816/150‑1 (MQ=255)
                                                 aGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCAAAAAA‑A‑ATTCTTTACTTTACAAAAAAATAAA‑TTTACAGaaaa                                                                                                          >  3:217395/1‑146 (MQ=255)
                                                  gCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑aaa                                                                                                   <  2:1359968/151‑1 (MQ=255)
                                                  gCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTGTAAAATTA‑A‑ATGCTTTATTTCACAAAAAAATAAA‑TTCGCaaaaaaaaaaa                                                                                                     >  3:15988/1‑145 (MQ=255)
                                                   cTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCGAAAAG‑A‑TTGTTTTTCTTAAAAAACAAAAAAA‑TTGACAGAAAAGAT‑aa                                                                                                    >  2:203306/1‑149 (MQ=255)
                                                     aaGAAAAAACTAATCCGCAATAAGTATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGGAAATAA‑A‑ATTCTTTACTTAAAAAAAAAAAAAA‑TTTACaaaaaaaaa‑aaaaa                                                                                                 >  2:1262503/1‑150 (MQ=255)
                                                     aaGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑aaaaaa                                                                                                <  3:845534/151‑1 (MQ=255)
                                                     aaGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑aaaaaa                                                                                                <  2:1297027/151‑1 (MQ=255)
                                                     aaGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑aaaa                                                                                                  <  3:853085/149‑1 (MQ=255)
                                                     aaGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAATAA‑A‑ATGTTTGTCTTTACAAAAAAAAAAA‑ATTACAAAAAAAAT‑aaaaa                                                                                                 >  1:414107/1‑150 (MQ=255)
                                                          aaaaCTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAATAA‑A‑ATTCTTTAATTAACAAAAAAAAAAA‑ATTACaaaaaaaaa‑aaaaaaaaa                                                                                             >  3:196961/1‑147 (MQ=255)
                                                          aaaaCTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGGGGCAATAA‑A‑TTTCTTTACCTTACAAACAAAAAAA‑CTTACAGaaaaaaa‑aaaaaaaa                                                                                              >  4:441883/1‑147 (MQ=255)
                                                           aaaCTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAA‑A‑TTGCTTTACTTTAAAAAAAAAAAAA‑TTGACaaaaaaaaa‑aaaaaaaaa                                                                                             >  2:40968/1‑146 (MQ=255)
                                                            aaCTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGAGGTGGAAAAAA‑A‑ATGCGTGTTTTTATAAACAAAAAACATTTaaaaaaaaaaa‑aaaaaaaagac                                                                                           >  1:337329/1‑146 (MQ=255)
                                                             aCTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAA‑A‑TTGCTTTGCTTAACAAACAAAAAAA‑TTTACAGAAAAAAT‑aaaaaaaaa                                                                                             >  1:432930/1‑144 (MQ=255)
                                                                aaTCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCg                                                                                      <  3:333825/150‑1 (MQ=255)
                                                                aaTCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAA‑A‑TTGCTTTACTTTAAAAAAAAAAAAA‑TTTACAGAAAAGAT‑AAAAAAAAAACCAGc                                                                                       >  3:65019/1‑149 (MQ=255)
                                                                 aTCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCggg                                                                                    <  2:692781/151‑1 (MQ=255)
                                                                   ccGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAT‑A‑ATTCTTGTCTTAAAAAACAAAAAAA‑ATTACAGaaaaaaa‑aaaaaaaaaaacagc                                                                                       >  2:1285864/1‑138 (MQ=255)
                                                                     gCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCt                                                                                <  3:1380317/151‑1 (MQ=255)
                                                                     gCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGTAAAAAA‑A‑ATGTTTTTCTTTACAAAAAAAAAAA‑TTTACAGaaaaaaa‑aaaaaaaaaaacaaaggggg                                                                                  >  3:296036/1‑136 (MQ=255)
                                                                     gCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGGGGAAAAAA‑ATTTGTTTGCTTTAAAAAAAAAAAAAC‑‑TGAAAGCAAAAAA‑AAAAAAAAAGACAGCcgggg                                                                                  >  2:1145543/1‑147 (MQ=255)
                                                                      cAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGGGGGAAAAG‑A‑TTTCTTGTCCTAACCAACAAAAAAA‑ATGACAGAAAAGAT‑AAAAAAAAAAACAACGGgcg                                                                                  >  2:155952/1‑148 (MQ=255)
                                                                       aaTAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCGTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTg                                                                               <  3:460933/150‑1 (MQ=255)
                                                                       aaTAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAG‑A‑TTTCTTTGCTTTAAAAAAAAAAAAA‑GTGACAGAAAAAAA‑AAAAAAAAAGCAAACGGGGGCCgg                                                                              >  2:171219/1‑151 (MQ=255)
                                                                        aTAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGc                                                                             <  3:78680/151‑1 (MQ=255)
                                                                          aaGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAA‑A‑ATTTTTTATTTTAAAAAAAAATAAA‑TTTAAAGAAAAAAA‑AAAAAAAAAAACAGAGGGCGCggg                                                                              >  3:962335/1‑148 (MQ=255)
                                                                            gAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGGGCAAAAAA‑A‑ATACTTTATTTTTAAAAAAAAAAAA‑ATTACAGGAAAAAT‑AAAAAAAAAAACCACGGGGGCTGGGTCtt                                                                         >  3:1270685/1‑151 (MQ=255)
                                                                              aTGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCAAAAAG‑A‑TTGCTTTTCTTTACAAAAAAAAAAC‑TTTATAGAAAAGAT‑AAAAAAAAAAACAGCGGGGGGTGGCTCtt                                                                         >  2:734395/1‑149 (MQ=255)
                                                                               tGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCAAAAAG‑A‑TTTGTTTACTTAAAAAAAACAAAAA‑TTGACAAAAAAAAA‑AAAAAAAAAAACAGCGGGGGCggggccct                                                                         >  1:409351/1‑143 (MQ=255)
                                                                               tGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCAAAAAG‑A‑ATTTTTGTCTTTATAAAAAAATAAC‑TTTTCAGAAAAAAA‑AAAAAAAAAGCCAGCGGGGGGTggggctt                                                                         >  2:664005/1‑143 (MQ=255)
                                                                               tGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGAGGTGTTAATAG‑A‑AATGTTGAGTTAAGAAAAACAGAAA‑ATCACAGGAAAGATAAAAAAAAAACCCAGCggggcgcgcccttgt                                                                        >  2:96107/1‑138 (MQ=255)
                                                                                gCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTGaa                                                                      <  2:261657/150‑1 (MQ=255)
                                                                                 cGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAA‑A‑ATGCTTGTATTTAAAAAAAAATAAA‑ATTACAGAAAAAAT‑AAAAAAAAAAGCAGCGGGCGCCGGgtct                                                                          >  3:482507/1‑145 (MQ=255)
                                                                                  ggATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGAc                                                                   <  2:576470/151‑1 (MQ=255)
                                                                                  ggATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGAc                                                                   <  2:631494/151‑1 (MQ=255)
                                                                                   gATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCAAAAAA‑A‑GTTGTTTACTTAAAAAAAAAAAAAA‑ATTACCGGAAACAT‑AAAAAAAAAAACAGCGGgcg                                                                                  >  2:327358/1‑135 (MQ=255)
                                                                                       aGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGGAAAAAA‑A‑TTGCTTGAATTTAAAAAAAGAAAAA‑TTTACAAGAAAGAA‑AAAAAAAAAAACAACGGGGGCTGGGTCtt                                                                         >  3:673711/1‑140 (MQ=255)
                                                                                          ttttGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCAAAAAA‑A‑TTGGTTTACTTTAAAAAAAGATAAA‑TTTACAGAAAAAAT‑AAAAAAAAAAACAGCGGGGGCTGGGTCTTGAAGaaggcaaa                                                             >  3:190767/1‑142 (MQ=255)
                                                                                           tttGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCCCATAG‑A‑TATTTTTGCTTAATAAAAAAAAAAA‑ATTTAAAAAAAGAT‑AAAAAAAAAAAAAGCGGGCGGGGGCGCTTTATGACGCTa‑aaat                                                          >  2:365375/1‑148 (MQ=255)
                                                                                              gcgcGTAAATGTTGCAATGTAATATTCCGTAACAGGGTGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTA‑AATTAGa                                                       <  3:360238/150‑1 (MQ=255)
                                                                                               cgcgTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTA‑AATTAGAAg                                                     <  1:32848/151‑1 (MQ=255)
                                                                                                gcgTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTA‑AATTAGAAGc                                                    <  3:716744/151‑1 (MQ=255)
                                                                                                gcgTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAA‑A‑ATTTTTTACTTAAAAAAAAAAAAAA‑ATTAAAAAAAAAAA‑AAAAAAAAAGCCACCGGGCGGCGGGTCTTGTAAACGCTa‑aa                                                            >  3:1008591/1‑143 (MQ=255)
                                                                                                 cgTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGGGGAAAAAA‑A‑ATTCTTGTCTTAAAAAAAAAAAAAA‑ATTAAAGAAAAAAT‑AAAAAAAAAACAAGCGGGGGCCGGCTCTTGTAGACGCTA‑AAATATaa                                                      >  3:93964/1‑148 (MQ=255)
                                                                                                  gTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTA‑AATTAGAAGCTg                                                  <  2:109043/151‑1 (MQ=255)
                                                                                                    aaaTGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAA‑A‑TTGCTTTTCTTTAAAAAAAAAAAAC‑ATGACAGAAAAAAT‑AAAAAAAAAAACAGCGGGGGCGGGGTCTTTAAAAAGCTC‑AATTaaaaaatgg                                                 >  3:958567/1‑145 (MQ=255)
                                                                                                     aaTGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCGAAAAG‑A‑TTTGTTTACTTAAAAAAAAGAAAAA‑TTTACAGAAAAAAA‑AAAAAAAAAGGCAGGGGGGGCGGGGGCTTTGAGACGCCA‑AAATaaaaaatgg                                                 >  2:1044207/1‑144 (MQ=255)
                                                                                                      aTGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCAAAAAA‑A‑TTGCTTGTCTTAAAAAAAAAAAAAA‑ATGACAGAAAAGAC‑AAAAAAAAAAACCACGGGGGCTGGCTCTTGTAGACGCCA‑AATTAGaaaagggcg                                               >  2:724561/1‑143 (MQ=255)
                                                                                                      aTGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGGGGAAAAAA‑A‑ATTCTTTAATTTACAAAAAAAAAAA‑ATGACAGAAAAAAA‑AAAAAAAAAGACAGAGGGGGCCGGCTCTTTTAGAAGCCA‑AAATaaaaaatgggg                                               >  3:953908/1‑143 (MQ=255)
                                                                                                              aTGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTA‑AATTAGAAGCTGGCGTTACGCGGa                                      <  2:595795/151‑1 (MQ=255)
                                                                                                                gTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTA‑AATTAGAAGCTGGCGTTACGCGGAg                                     <  3:826753/150‑1 (MQ=255)
                                                                                                                   atatTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTA‑AATTAGAAGCTGGCGTTACGCGGAGTACg                                 <  3:993083/151‑1 (MQ=255)
                                                                                                                       tCCGTAACAGGATGATCGTTATGGCGGGGGTGTCAATAGAA‑TTTGTTG‑CTTTAAAAACAAATAAA‑TTTGGAGAAAAAAT‑AAAAAAAGAAGCAGCGGGCGGTGGCTCTTTTAGAAACTA‑AATTAAAAGCTGGCGTTACGCGGAGGACgggg                              >  2:391577/1‑150 (MQ=255)
                                                                                                                         cGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTA‑AATTAGAAGCTGGCGTTACGCGGAGTACGTGGGaa                           <  3:407749/151‑1 (MQ=255)
                                                                                                                          gTAACAGGATGATCGTTATGGCGGGGAGGCAAAAAT‑A‑ATATTTTACTTTACAAAAAGATAAA‑TTGATAAAAAAAAT‑AAAAAAAAAGCAACACGGGGCGGGCACTTCAAGACGCAACAATTA‑AAAATGGGGGTACGCGGAGGACGAgggga                           >  3:20442/1‑148 (MQ=255)
                                                                                                                           tAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTg                                                                        <  1:399779/105‑1 (MQ=255)
                                                                                                                            aaCAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTA‑AATTAGAAGCTGGCGTTACGCGGAGTACGTGGGAACg                         <  3:350562/150‑1 (MQ=255)
                                                                                                                                  atgatCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTA‑AATTAGAAGCTGGCGTTACGCGGAGTACGTGGGAACGGAatcac                  <  3:96121/151‑1 (MQ=255)
                                                                                                                                  atgatCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTA‑AATTAGAAGCTGGCGTTACGCGGAGTACGTGGGAACGGAatcac                  <  2:196933/151‑1 (MQ=255)
                                                                                                                                    gatCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTA‑AATTAGAAGCTGGCGTTACGCGGAGTACGTGGGAACGGAatcaca                 <  4:122216/150‑1 (MQ=255)
                                                                                                                                    gatCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTA‑AATTAGAAGCTGGCGTTACGCGGAGTACGTGGGAACGGAatcaca                 <  2:220655/150‑1 (MQ=255)
                                                                                                                                                 gggTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTA‑AATTAGAAGCTGGCGTTACGCGGAGTACGTGGGAACGGAATCACATCACGTACGTTTTg   >  1:433128/1‑151 (MQ=255)
                                                                                                                                                  ggTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTA‑AATTAGAAGCTGGCGTTACGCGCAGTACGTGGGAACGGAATCACATCACGTACGTTTTGc  >  4:385700/1‑151 (MQ=255)
                                                                                                                                                    |                                                                                                                                                         
TCTTTCAGACATCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAG‑A‑TTGCTTGACTTAACAAACAGATAAC‑TTGACAGAAAAGAT‑AAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTA‑AATTAGAAGCTGGCGTTACGCGGAGTACGTGGGAACGGAATCACATCACGTACGTTTTGC  >  NC_000913/987346‑987642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑