Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913987,4940TG41.6% 215.7 / 25.3 114intergenic (‑512/+91)ompF/asnSouter membrane porin 1a (Ia;b;F)/asparaginyl tRNA synthetase
Reads supporting (aligned to +/- strand):  ref base T (7/59);  new base G (47/0);  total (55/59)
Fisher's exact test for biased strand distribution p-value = 1.12e-24
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 115 total aligned reads displayed.

TCTTTCAGACATCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTAAATTAGAAGCTGGCGTTACGCGGAGTACGTGGGAACGGAATCACATCACGTACGTTTTGC  >  NC_000913/987346‑987642
                                                                                                                                                    |                                                                                                                                                         
    tCAGACATCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTggca                                                                                                                                                      >  4:399873/1‑147 (MQ=255)
     cAGACATCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAAt                                                                                                                                                    <  3:200711/151‑1 (MQ=255)
     cAGACATCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCcaa                                                                                                                                                     >  2:841115/1‑150 (MQ=255)
        aCATCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGa                                                                                                                                                <  2:533996/151‑1 (MQ=255)
        aCATCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGa                                                                                                                                                <  2:1384941/151‑1 (MQ=255)
        aCATCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGa                                                                                                                                                <  3:1342274/151‑1 (MQ=255)
          aTCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGccgaaa                                                                                                                                                   >  2:133800/1‑142 (MQ=255)
          aTCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGaaa                                                                                                                                                     >  3:595823/1‑145 (MQ=255)
          aTCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCAAATAGa                                                                                                                                                >  3:454712/1‑149 (MQ=255)
           tCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCaaaaaaaat                                                                                                                                               >  4:420661/1‑144 (MQ=255)
            ccAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGc                                                                                                                                           <  2:73185/151‑1 (MQ=255)
             cAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGGTGATCGTTATGGCGGGGGTGGAAATaaaatt                                                                                                                                              >  2:360207/1‑144 (MQ=255)
              aGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCtt                                                                                                                                         <  2:843757/151‑1 (MQ=255)
                  tGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCaaaaaaaattctttat                                                                                                                                        >  1:456707/1‑137 (MQ=255)
                     cAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTaa                                                                                                                                  <  2:1121738/151‑1 (MQ=255)
                      aaaaaaTAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTGGTAAAttaaattcttgtctt                                                                                                                                      >  2:186074/1‑134 (MQ=255)
                          aaTAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCAAAAAGATTGCTTTACTTtaaaaa                                                                                                                              >  2:350533/1‑150 (MQ=255)
                           aTAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTaacaaaca                                                                                                                            <  3:133817/151‑1 (MQ=255)
                                aTGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATaa                                                                                                                       <  3:1191854/151‑1 (MQ=255)
                                aTGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATa                                                                                                                        <  4:456702/150‑1 (MQ=255)
                                aTGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATa                                                                                                                        <  2:1346580/150‑1 (MQ=255)
                                aTGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATa                                                                                                                        <  2:123713/150‑1 (MQ=255)
                                 tGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAAAATGTTTTTCTTAAAAAAAAGaaaa                                                                                                                       >  3:891022/1‑150 (MQ=255)
                                  gAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAAc                                                                                                                      <  3:630114/150‑1 (MQ=255)
                                  gAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGGAAAAAATTTCTTTTCTTtacaaaaaaaaaaa                                                                                                                      >  3:1125364/1‑142 (MQ=255)
                                    aaaTTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTg                                                                                                                  <  2:948521/151‑1 (MQ=255)
                                        tgtgCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCAAATAAATTGCTTTACTTAACAAACAAATAAAtt                                                                                                                   >  2:716718/1‑146 (MQ=255)
                                         gtgCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAg                                                                                                              <  3:191601/150‑1 (MQ=255)
                                         gtgCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGa                                                                                                             <  3:1376900/151‑1 (MQ=255)
                                          tgCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAATAAAAAGCTTTACTTtacaaaaaaaataactgac                                                                                                                 >  4:427763/1‑134 (MQ=255)
                                           gCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAAATTGCTTGACTTAACAAAAAAATAACTTGACAGaa                                                                                                            >  2:826719/1‑150 (MQ=255)
                                              aTTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAg                                                                                                         <  2:1107369/150‑1 (MQ=255)
                                              aTTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGa                                                                                                        <  3:974908/151‑1 (MQ=255)
                                                tAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGAt                                                                                                       <  3:881683/150‑1 (MQ=255)
                                                tAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGAt                                                                                                       <  3:88467/150‑1 (MQ=255)
                                                 aGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATaa                                                                                                    <  3:1005721/151‑1 (MQ=255)
                                                 aGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATa                                                                                                     <  3:1054816/150‑1 (MQ=255)
                                                 aGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCAAAAAAAATTCTTTACTTTACAAAAAAATAAATTTACAGaaaa                                                                                                          >  3:217395/1‑146 (MQ=255)
                                                  gCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATaaa                                                                                                   <  2:1359968/151‑1 (MQ=255)
                                                  gCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTGTAAAATTAAATGCTTTATTTCACAAAAAAATAAATTCGCaaaaaaaaaaa                                                                                                     >  3:15988/1‑145 (MQ=255)
                                                   cTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCGAAAAGATTGTTTTTCTTAAAAAACAAAAAAATTGACAGAAAAGATaa                                                                                                    >  2:203306/1‑149 (MQ=255)
                                                     aaGAAAAAACTAATCCGCAATAAGTATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGGAAATAAAATTCTTTACTTAAAAAAAAAAAAAATTTACaaaaaaaaaaaaaa                                                                                                 >  2:1262503/1‑150 (MQ=255)
                                                     aaGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATaaaaaa                                                                                                <  3:845534/151‑1 (MQ=255)
                                                     aaGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATaaaaaa                                                                                                <  2:1297027/151‑1 (MQ=255)
                                                     aaGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATaaaa                                                                                                  <  3:853085/149‑1 (MQ=255)
                                                     aaGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAATAAAATGTTTGTCTTTACAAAAAAAAAAAATTACAAAAAAAATaaaaa                                                                                                 >  1:414107/1‑150 (MQ=255)
                                                          aaaaCTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAATAAAATTCTTTAATTAACAAAAAAAAAAAATTACaaaaaaaaaaaaaaaaaa                                                                                             >  3:196961/1‑147 (MQ=255)
                                                          aaaaCTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGGGGCAATAAATTTCTTTACCTTACAAACAAAAAAACTTACAGaaaaaaaaaaaaaaa                                                                                              >  4:441883/1‑147 (MQ=255)
                                                           aaaCTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAAATTGCTTTACTTTAAAAAAAAAAAAATTGACaaaaaaaaaaaaaaaaaa                                                                                             >  2:40968/1‑146 (MQ=255)
                                                            aaCTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGAGGTGGAAAAAAAATGCGTGTTTTTATAAACAAAAAACATTTaaaaaaaaaaaaaaaaaaagac                                                                                           >  1:337329/1‑146 (MQ=255)
                                                             aCTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAAATTGCTTTGCTTAACAAACAAAAAAATTTACAGAAAAAATaaaaaaaaa                                                                                             >  1:432930/1‑144 (MQ=255)
                                                                aaTCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCg                                                                                      <  3:333825/150‑1 (MQ=255)
                                                                aaTCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAAATTGCTTTACTTTAAAAAAAAAAAAATTTACAGAAAAGATAAAAAAAAAACCAGc                                                                                       >  3:65019/1‑149 (MQ=255)
                                                                 aTCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCggg                                                                                    <  2:692781/151‑1 (MQ=255)
                                                                   ccGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAATAATTCTTGTCTTAAAAAACAAAAAAAATTACAGaaaaaaaaaaaaaaaaaacagc                                                                                       >  2:1285864/1‑138 (MQ=255)
                                                                     gCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCt                                                                                <  3:1380317/151‑1 (MQ=255)
                                                                     gCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGTAAAAAAAATGTTTTTCTTTACAAAAAAAAAAATTTACAGaaaaaaaaaaaaaaaaaacaaaggggg                                                                                  >  3:296036/1‑136 (MQ=255)
                                                                     gCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGGGGAAAAAAATTTGTTTGCTTTAAAAAAAAAAAAACTGAAAGCAAAAAAAAAAAAAAAGACAGCcgggg                                                                                  >  2:1145543/1‑147 (MQ=255)
                                                                      cAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGGGGGAAAAGATTTCTTGTCCTAACCAACAAAAAAAATGACAGAAAAGATAAAAAAAAAAACAACGGgcg                                                                                  >  2:155952/1‑148 (MQ=255)
                                                                       aaTAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCGTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTg                                                                               <  3:460933/150‑1 (MQ=255)
                                                                       aaTAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAGATTTCTTTGCTTTAAAAAAAAAAAAAGTGACAGAAAAAAAAAAAAAAAAGCAAACGGGGGCCgg                                                                              >  2:171219/1‑151 (MQ=255)
                                                                        aTAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGc                                                                             <  3:78680/151‑1 (MQ=255)
                                                                          aaGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAAAATTTTTTATTTTAAAAAAAAATAAATTTAAAGAAAAAAAAAAAAAAAAAACAGAGGGCGCggg                                                                              >  3:962335/1‑148 (MQ=255)
                                                                            gAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGGGCAAAAAAAATACTTTATTTTTAAAAAAAAAAAAATTACAGGAAAAATAAAAAAAAAAACCACGGGGGCTGGGTCtt                                                                         >  3:1270685/1‑151 (MQ=255)
                                                                              aTGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCAAAAAGATTGCTTTTCTTTACAAAAAAAAAACTTTATAGAAAAGATAAAAAAAAAAACAGCGGGGGGTGGCTCtt                                                                         >  2:734395/1‑149 (MQ=255)
                                                                               tGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCAAAAAGATTTGTTTACTTAAAAAAAACAAAAATTGACAAAAAAAAAAAAAAAAAAAACAGCGGGGGCggggccct                                                                         >  1:409351/1‑143 (MQ=255)
                                                                               tGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCAAAAAGAATTTTTGTCTTTATAAAAAAATAACTTTTCAGAAAAAAAAAAAAAAAAGCCAGCGGGGGGTggggctt                                                                         >  2:664005/1‑143 (MQ=255)
                                                                               tGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGAGGTGTTAATAGAAATGTTGAGTTAAGAAAAACAGAAAATCACAGGAAAGATAAAAAAAAAACCCAGCggggcgcgcccttgt                                                                        >  2:96107/1‑138 (MQ=255)
                                                                                gCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTGaa                                                                      <  2:261657/150‑1 (MQ=255)
                                                                                 cGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAAAATGCTTGTATTTAAAAAAAAATAAAATTACAGAAAAAATAAAAAAAAAAGCAGCGGGCGCCGGgtct                                                                          >  3:482507/1‑145 (MQ=255)
                                                                                  ggATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGAc                                                                   <  2:576470/151‑1 (MQ=255)
                                                                                  ggATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGAc                                                                   <  2:631494/151‑1 (MQ=255)
                                                                                   gATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCAAAAAAAGTTGTTTACTTAAAAAAAAAAAAAAATTACCGGAAACATAAAAAAAAAAACAGCGGgcg                                                                                  >  2:327358/1‑135 (MQ=255)
                                                                                       aGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGGAAAAAAATTGCTTGAATTTAAAAAAAGAAAAATTTACAAGAAAGAAAAAAAAAAAAACAACGGGGGCTGGGTCtt                                                                         >  3:673711/1‑140 (MQ=255)
                                                                                          ttttGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCAAAAAAATTGGTTTACTTTAAAAAAAGATAAATTTACAGAAAAAATAAAAAAAAAAACAGCGGGGGCTGGGTCTTGAAGaaggcaaa                                                             >  3:190767/1‑142 (MQ=255)
                                                                                           tttGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCCCATAGATATTTTTGCTTAATAAAAAAAAAAAATTTAAAAAAAGATAAAAAAAAAAAAAGCGGGCGGGGGCGCTTTATGACGCTaaaat                                                          >  2:365375/1‑148 (MQ=255)
                                                                                              gcgcGTAAATGTTGCAATGTAATATTCCGTAACAGGGTGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTAAATTAGa                                                       <  3:360238/150‑1 (MQ=255)
                                                                                               cgcgTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTAAATTAGAAg                                                     <  1:32848/151‑1 (MQ=255)
                                                                                                gcgTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTAAATTAGAAGc                                                    <  3:716744/151‑1 (MQ=255)
                                                                                                gcgTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAAAATTTTTTACTTAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAGCCACCGGGCGGCGGGTCTTGTAAACGCTaaa                                                            >  3:1008591/1‑143 (MQ=255)
                                                                                                 cgTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGGGGAAAAAAAATTCTTGTCTTAAAAAAAAAAAAAAATTAAAGAAAAAATAAAAAAAAAACAAGCGGGGGCCGGCTCTTGTAGACGCTAAAATATaa                                                      >  3:93964/1‑148 (MQ=255)
                                                                                                  gTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTAAATTAGAAGCTg                                                  <  2:109043/151‑1 (MQ=255)
                                                                                                    aaaTGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGGAAAAAAATTGCTTTTCTTTAAAAAAAAAAAACATGACAGAAAAAATAAAAAAAAAAACAGCGGGGGCGGGGTCTTTAAAAAGCTCAATTaaaaaatgg                                                 >  3:958567/1‑145 (MQ=255)
                                                                                                     aaTGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCGAAAAGATTTGTTTACTTAAAAAAAAGAAAAATTTACAGAAAAAAAAAAAAAAAAGGCAGGGGGGGCGGGGGCTTTGAGACGCCAAAATaaaaaatgg                                                 >  2:1044207/1‑144 (MQ=255)
                                                                                                      aTGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGTGCAAAAAAATTGCTTGTCTTAAAAAAAAAAAAAAATGACAGAAAAGACAAAAAAAAAAACCACGGGGGCTGGCTCTTGTAGACGCCAAATTAGaaaagggcg                                               >  2:724561/1‑143 (MQ=255)
                                                                                                      aTGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGGGGGAAAAAAAATTCTTTAATTTACAAAAAAAAAAAATGACAGAAAAAAAAAAAAAAAAGACAGAGGGGGCCGGCTCTTTTAGAAGCCAAAATaaaaaatgggg                                               >  3:953908/1‑143 (MQ=255)
                                                                                                              aTGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTAAATTAGAAGCTGGCGTTACGCGGa                                      <  2:595795/151‑1 (MQ=255)
                                                                                                                gTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTAAATTAGAAGCTGGCGTTACGCGGAg                                     <  3:826753/150‑1 (MQ=255)
                                                                                                                   atatTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTAAATTAGAAGCTGGCGTTACGCGGAGTACg                                 <  3:993083/151‑1 (MQ=255)
                                                                                                                       tCCGTAACAGGATGATCGTTATGGCGGGGGTGTCAATAGAATTTGTTGCTTTAAAAACAAATAAATTTGGAGAAAAAATAAAAAAAGAAGCAGCGGGCGGTGGCTCTTTTAGAAACTAAATTAAAAGCTGGCGTTACGCGGAGGACgggg                              >  2:391577/1‑150 (MQ=255)
                                                                                                                         cGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTAAATTAGAAGCTGGCGTTACGCGGAGTACGTGGGaa                           <  3:407749/151‑1 (MQ=255)
                                                                                                                          gTAACAGGATGATCGTTATGGCGGGGAGGCAAAAATAATATTTTACTTTACAAAAAGATAAATTGATAAAAAAAATAAAAAAAAAGCAACACGGGGCGGGCACTTCAAGACGCAACAATTAAAAATGGGGGTACGCGGAGGACGAgggga                           >  3:20442/1‑148 (MQ=255)
                                                                                                                           tAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTg                                                                        <  1:399779/105‑1 (MQ=255)
                                                                                                                            aaCAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTAAATTAGAAGCTGGCGTTACGCGGAGTACGTGGGAACg                         <  3:350562/150‑1 (MQ=255)
                                                                                                                                  atgatCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTAAATTAGAAGCTGGCGTTACGCGGAGTACGTGGGAACGGAatcac                  <  3:96121/151‑1 (MQ=255)
                                                                                                                                  atgatCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTAAATTAGAAGCTGGCGTTACGCGGAGTACGTGGGAACGGAatcac                  <  2:196933/151‑1 (MQ=255)
                                                                                                                                    gatCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTAAATTAGAAGCTGGCGTTACGCGGAGTACGTGGGAACGGAatcaca                 <  4:122216/150‑1 (MQ=255)
                                                                                                                                    gatCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTAAATTAGAAGCTGGCGTTACGCGGAGTACGTGGGAACGGAatcaca                 <  2:220655/150‑1 (MQ=255)
                                                                                                                                                 gggTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTAAATTAGAAGCTGGCGTTACGCGGAGTACGTGGGAACGGAATCACATCACGTACGTTTTg   >  1:433128/1‑151 (MQ=255)
                                                                                                                                                  ggTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTAAATTAGAAGCTGGCGTTACGCGCAGTACGTGGGAACGGAATCACATCACGTACGTTTTGc  >  4:385700/1‑151 (MQ=255)
                                                                                                                                                    |                                                                                                                                                         
TCTTTCAGACATCCAGAATGCCAAAAAATAGTATGAAAATTGTGCTATTAGCTAAGAAAAAACTAATCCGCAATAAGAATGCGGATTAGTTTTTGCGCGTAAATGTTGCAATGTAATATTCCGTAACAGGATGATCGTTATGGCGGGGTTGCAAATAGATTGCTTGACTTAACAAACAGATAACTTGACAGAAAAGATAAAAAAAGAGCCAGCGGGCGCTGGCTCTTGAAGACGCTAAATTAGAAGCTGGCGTTACGCGGAGTACGTGGGAACGGAATCACATCACGTACGTTTTGC  >  NC_000913/987346‑987642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: