| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,423,297 | 0 | G | C | 40.8% | 188.0 / 46.9 | 98 | intergenic (+103/+126) | yhdZ/rrfF | putative amino acid ABC transporter ATPase/5S ribosomal RNA of rrnD operon |
| Reads supporting (aligned to +/- strand): ref base G (12/46); new base C (40/0); total (52/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.26e-17 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 102 total aligned reads displayed.
AAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGC > NC_000913/3423150‑3423447 | aaaTCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCgg < 3:385452/149‑1 (MQ=255) aTCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCCCCACCCTCCCGGc > 1:306861/1‑149 (MQ=255) tCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCCCCCCCCCCCCGGcc > 4:443544/1‑149 (MQ=255) gagCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGc < 2:296463/151‑1 (MQ=255) aCGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGAGGCCCG‑CCCCCCCCCCCCCCGGGCGTTGCtt > 3:546993/1‑147 (MQ=255) cGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCaa < 2:413392/151‑1 (MQ=255) cGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCCCCACCCCCCCGGCCGCTGCTTT‑Gc > 2:808712/1‑149 (MQ=255) gCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTc < 2:466729/151‑1 (MQ=255) tttttATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGTCCCG‑TCCGCCCCCCCCCCGGCCGTttcttctccaccctta > 3:107985/1‑139 (MQ=255) ttttATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCaaa < 2:186302/150‑1 (MQ=255) ttttATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTG‑CCCCCCCCCCCCCCGGCCGTTGGTTT‑TCAAcacttaaa > 3:616668/1‑143 (MQ=255) tttATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAAt < 3:976535/150‑1 (MQ=255) ttATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATc < 3:1274430/150‑1 (MQ=255) aTCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCCCCCCCCCCCGGGGCGGTGCTTC‑GCAAAGTTTAAAACCg > 2:959327/1‑150 (MQ=25) aTCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTG‑CCCCCCCCCCCCCCGGCCGTTGCTTC‑GCAACGTTTAAATCCGc > 2:236199/1‑151 (MQ=255) cAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTT‑CCCCCCCCCCCCCCGGCCCGTGCTTC‑GCAACGTTCAAATCCCCTccc > 2:1071214/1‑151 (MQ=21) cAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTccc < 4:20864/151‑1 (MQ=255) aGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGTGCTG‑CCCCCCACCCCCCCGGCCGTTGCCTT‑CCAACGGTTaaaaacccccccc > 2:255867/1‑141 (MQ=255) aGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGCCTG‑CCCCCCCCCCTCCGGGCCCGTGGTTC‑TCAACCTTTCAATTCGCcccc > 2:67590/1‑150 (MQ=255) aGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTTCTG‑CCCCCCCCCCCCCCCGCCGTTGCTTC‑CCAACGGTCAAATCCGCccccc > 2:699130/1‑150 (MQ=255) aGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCcg < 3:431576/151‑1 (MQ=255) aGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGAGGTCCCC‑ACCGCCCCCCCCCCGGTCGGGGCCTCAGCAA‑GTTTTAATCCGCTc > 2:1256752/1‑148 (MQ=255) aaTCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCCCCCCCCCCCCGGGCGGTTCCTTC‑‑CAACCCTCTAAACCCCTcccc > 3:1298614/1‑146 (MQ=21) aaTCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCcggcgg < 4:371568/151‑1 (MQ=255) aaTCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCcggcgg < 1:80194/151‑1 (MQ=255) cATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGCCCG‑CCCGCCCCCCCCCCCGGCGCTGCTTC‑CCCAACTTTAAAACCCCTCCccgcggggtt > 1:252196/1‑147 (MQ=255) cATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTGCTG‑CCCGCCCCCCTCCCCGCCGTTGCTTC‑GCCAAGTTCAAATCCCCTCCccgcggggtt > 3:889980/1‑147 (MQ=255) cATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCCCCCCCCCCCCGGCCGTTGGTTC‑TCAACGGTTAAAACCGCCCCccgcggggtt > 3:211618/1‑147 (MQ=18) tAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCCG‑CCCGCCCCCCCCCCGGCCGGTGCTTC‑GCAACGTTCAAATCTGCTCCccgcggggtt > 4:441173/1‑144 (MQ=18) aTTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGCCTG‑CCCCCCCCCCCCCCGGCCGTTGCTTC‑GCAACGATCCAAACCGCCCCccgcgggatt > 4:258481/1‑142 (MQ=255) tGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTa < 2:1004951/150‑1 (MQ=255) gAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACt < 3:959364/151‑1 (MQ=255) gAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACt < 4:404373/151‑1 (MQ=255) gAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCCCCCCCCTCCCGGCCCTTGCTTT‑GCAACACTTCAATCCCCCCCCCGCGGGTTTTTTCTAc > 1:193591/1‑150 (MQ=18) gAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCG‑CCCGCCCCCCCCCCGGCCGTTTTTTC‑TCAAAGTTTAAATCCCCCCCccgcggggtttt > 3:392372/1‑139 (MQ=255) aaTGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGCCTG‑CCCGCCCCCCTCCCGGCCGGTGCTTT‑TCAAAGTTTAAAACCGCTCCcggcggcgtttttcttc > 3:70884/1‑138 (MQ=255) aTGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGc < 4:146417/108‑1 (MQ=255) tGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCCC‑CCCCCCACCCCCCCCGCCGTTTCTTC‑CCAACACTCAAAACCGCCCCcgggggggtttt > 3:1370771/1‑136 (MQ=18) gTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGTGGTGCTG‑GCCCCCCCCCCCCCGGCCGTTTCTTC‑GCCAAGGTCTAATCCCCCCCCCGCGGAGTTGTCCTAccccgg > 2:634609/1‑146 (MQ=255) aGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGgag < 2:105108/150‑1 (MQ=255) aGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCCCCCCCCCCCCGGCCGTTGCTTC‑GCAACGTTCAAAACCCCTCCCCGCGGGTTTGTCCTTCTCgg > 1:478183/1‑147 (MQ=17) tCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAgt < 2:85849/150‑1 (MQ=255) cGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCCCCCCCCCGGCCGGTGCTTC‑GCAACGTTCAAATCCCCCCCCCGCGGGTTTTTCCTACTCggggg > 2:278265/1‑144 (MQ=17) cGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAgtgt < 3:588217/151‑1 (MQ=255) cGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAgt < 4:311699/149‑1 (MQ=255) gAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGtt < 2:1196496/151‑1 (MQ=255) gAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTC‑CCCCCCCCCCCCCCCGCCCGTGCTTT‑GCAACGTTTAAAACCCCCCCCCCCGGGTTTGTTCTTCTCCGGggaggg > 3:1237963/1‑147 (MQ=255) aaaGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCa < 2:848228/151‑1 (MQ=255) aaGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCAc < 4:342775/151‑1 (MQ=255) aaaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGTGAGTGTTCACCGaca < 3:911970/151‑1 (MQ=255) cATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAacaaca < 3:330265/151‑1 (MQ=255) cATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCCCCCGGCCGTTGCTTT‑GCAAAGGTCAAATCCGCTCCCCGCGGGTTTTTCCTACTCGGGGGAGGGTTTACCCaccaacaa > 1:282875/1‑149 (MQ=17) tttCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGGCCTG‑CCCCCCCCCCCCCCGGCCGCTGCTTT‑GCAAAGTTTCAATTCGCCCCCGCCGGGGTTTTTCTCCTCTGGGGCGAGGTTACCCGCAAacaacaagta > 3:681634/1‑146 (MQ=255) tttCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCCCCCCCCCCCCGGCCGTTGCTTT‑GCAACGTTTAAAACCCCCCCCCGCGGGGTTGTCCTACTCCGGAGAGTGGTCACCCACAAAAAACAAAt > 2:316427/1‑149 (MQ=14) cGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAAc < 2:1036544/151‑1 (MQ=255) cGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAAc < 2:574237/151‑1 (MQ=255) ggATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCCCCACCCTCCCGGCCGGTGCTTC‑GCAAAGTTCAAATCCGCTCCCCGCGGGTTTTTCCTACTCGGGGGGGGGTTTACCCACAAACAAAAGAT‑aaaa > 2:1192733/1‑149 (MQ=14) gATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTG‑CCCCCCCCCCTCCCGGCCGGTGCTTC‑GCAACGTTTAAAACCCCCCCCCGCGGGTTTTTCCTACTCGGGAGAGGGTTTACCCACAAACAAAAGAT‑aaaaaa > 2:1302383/1‑148 (MQ=255) gATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCCG‑CCCCCCCCCCCCCCGGCCGGTGCTTC‑GCAACGTTCAAATCCCCTCCCCGCGGGTTTGTCCTACTCCGGGGGGGGGTCACCCACAAAAAAAAGaa‑aaaaaa > 3:916946/1‑148 (MQ=255) tGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACaaa < 3:699155/150‑1 (MQ=255) ggCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAg < 2:631974/151‑1 (MQ=255) gCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGGCCTG‑CCCCCCACCCCCCGGGCCGTTGCTTT‑GCAACGTTTAAAACCGCTCCCCGCGGAGTTTTCCTACTCGGGAGAGAGTTCCCCCACCAACAAAAAAA‑AAAACaaaa > 1:249324/1‑149 (MQ=255) gCCTTTCGCTTGATTGGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAgg < 3:549963/151‑1 (MQ=255) ttCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCCCCCCCCCGGCCGGTGCTTT‑GCCACGTTCTAATCCGCCCCCCGCGGAGTTGTCCTACTCCGGAGGGTGTTTACCCACAAAAAAAAAAT‑Aaaaaaaaaaaccc > 2:260125/1‑145 (MQ=9) tgCTTAATTTGATGCCTGGCAGTTTATGGCGGGCGTCCTG‑CCCCCCCCCCCCCCGGCCGGTGCTTC‑GCAACGGTCCAAATCGCCCCCCGCGGGGTTGTTCTACTCCGGAGAGGGGTCACCCCCCAAAAAAAGAa‑aaaaaaaaaagacc > 3:1050275/2‑143 (MQ=0) cGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAg < 1:229578/150‑1 (MQ=255) cGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAg < 2:546961/150‑1 (MQ=255) cGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGCCCTG‑CCCCCCCCCCCCCCGGCCGGTGCTTC‑GCCACGTTCAAAACCCCCCCCCGCGGGTTTGTCCTACTCCGGAGAGGGTTCACCCACAAAAAAAAGAT‑AAAAAAAAAAGccc > 1:466561/1‑148 (MQ=2) gCTTGATTTGATGTCTGGCAGTTTATGGCGGGGGTCCTG‑CCCCCCCCCCTCCCGGGCGTTGCTTT‑CCAAAGGTCAAATCCCCTCCCCGCGGGTTTTTTCTAATCCGGGGAGGGTTCTCCCACAAACAACAAAT‑Aaaaaaaaaaggcc > 2:1164809/1‑142 (MQ=255) taatttgatGCCTGGCAGTTTATGGCGGGCGTCCTC‑CCCCCCCCCCCCCCCGCCCCTGCTTT‑GCCAAGTTCAAATCCCCCCCCCGCGGGTTTTTTCTCCTCCGGGGAGCGGTCCCCCCCCAAAAACCAATAAAAAAAAAAGGccccgcttt > 4:459038/3‑145 (MQ=0) atttgatGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCg < 3:66259/151‑1 (MQ=38) tttgatGCCTGGCAGTTTATGGCGGGCGGCCCG‑CCCCCCCCCCCCCCGGCCGGTTCTTC‑GCCACCTTCCAATTCCCCCCCCGCGGGCTTGTCCTCCTCCGGAGAGCGTTCCCCCACAAACCACCAAA‑AAAAAAAAAAGcccccgcttcc > 3:433331/1‑141 (MQ=0) ttgatGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCCCCACCCTCCCGGCCGGTGCTTC‑GCAACGTTCAAATCCCCCCCCCGCGGGTTTGTCCTACTCCGGGGAGTGTTCACCGCCAAACAACAGAT‑AAAACAAAAAGCCCAGTCTTCCgcc > 1:468446/1‑149 (MQ=11) tgatGTCTGGCAGTTTATGGCGGGCGGCCTG‑CCCCCCCCCCCCCCGGCCGTTGCTTC‑GCAAACTTCAAATCCGCCCCCCGCGGGGTTTTCCTACTCGGGAGAGGGTTCACCCACAAACAACAGAT‑AAAAAAAAAAGACCAGTCTTCCCAc > 2:982619/1‑150 (MQ=255) gatGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAGCAAAAGGCCCAGTCTTCCGACTg < 3:992856/151‑1 (MQ=38) gatGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTg < 2:211590/151‑1 (MQ=38) atGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTg < 3:68399/150‑1 (MQ=38) gTCTGGCAGTTTATGGCGGGCGGCCTG‑CCCCCCCCCCCCCCGGCCGTTGCTTC‑GCAACGTTCAAAACCCCTCCCCGCGGGGTTTTCCTACCCGGGGGAGGGGTTACCCACAAAAAAAAGAA‑AAAAAAAAAAACCCAGACTTCCCCCTGa > 3:397577/1‑149 (MQ=2) ggCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCttt < 2:70874/151‑1 (MQ=35) aGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGt < 2:616641/151‑1 (MQ=38) gTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGtt < 1:272118/151‑1 (MQ=38) ggcgggcgTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAttt < 3:808747/151‑1 (MQ=38) ggcgggcgTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAttt < 3:14103/151‑1 (MQ=38) gcgggcgTCCTG‑CCCGCCAGCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCTCCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTAtt < 3:734555/149‑1 (MQ=255) cgggcgTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTg > 3:141519/1‑150 (MQ=38) gggcgTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGa < 3:1148955/150‑1 (MQ=38) tCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCt < 3:946950/150‑1 (MQ=40) ccTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCTAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTgg > 2:1368605/1‑151 (MQ=255) cTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGc > 2:125992/1‑151 (MQ=40) tG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGc > 3:983106/1‑150 (MQ=40) tG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGc > 2:803608/1‑150 (MQ=40) g‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGc > 4:215670/1‑149 (MQ=40) g‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCa < 2:761618/150‑1 (MQ=40) g‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCAACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCa < 2:1376461/150‑1 (MQ=255) cGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTc > 2:481653/1‑151 (MQ=40) cGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTc < 3:1192790/151‑1 (MQ=40) ccGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACtctc < 2:1244805/151‑1 (MQ=40) gggCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGc < 2:280403/151‑1 (MQ=40) gggCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGc > 4:396541/1‑151 (MQ=40) gggCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGc < 1:333835/151‑1 (MQ=40) | AAATCAGAGCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTG‑CCCGCCACCCTCCGGGCCGTTGCTTC‑GCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAT‑AAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGC > NC_000913/3423150‑3423447 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |