BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,132,321	C→T	T156T (ACC→ACT)	flgD →	flagellar hook assembly protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,132,321	0	C	T	100.0%	431.4 / NA	107	T156T (ACC→ACT)	flgD	flagellar hook assembly protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (62/45); total (62/45)

Only 100 of 109 total aligned reads displayed.

TGCGGGAACCGGCAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACCGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGCTCTGGTGCAGGGTGTG  >  NC_000913/1132177‑1132468

tGCGGGAACCGGCAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCgg                                                                                                                                                >  3:1227171/1‑150 (MQ=255)

 gCGGGAACCGGCAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCgg                                                                                                                                                >  2:391670/1‑149 (MQ=255)

 gCGGGAACCGGCAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGa                                                                                                                                               <  2:1050285/150‑1 (MQ=255)

   gggAACCGGCAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGtt                                                                                                                                            >  3:11281/1‑151 (MQ=255)

     gAACCGGCAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTca                                                                                                                                          <  3:123921/151‑1 (MQ=255)

      aaCCGGCAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTcac                                                                                                                                         <  2:1331589/151‑1 (MQ=255)

       aCCGGCAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTcaca                                                                                                                                        <  2:24060/151‑1 (MQ=255)

        ccGGCAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTcac                                                                                                                                         >  2:1312912/1‑149 (MQ=255)

         cGGCAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGt                                                                                                                                      >  4:379927/1‑151 (MQ=255)

             aGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTc                                                                                                                                   >  1:435226/1‑150 (MQ=255)

             aGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCa                                                                                                                                  <  3:630343/151‑1 (MQ=255)

                 aagaagGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTg                                                                                                                              <  1:434196/151‑1 (MQ=255)

                   gaagGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTggg                                                                                                                            >  4:472474/1‑151 (MQ=255)

                   gaagGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTggg                                                                                                                            >  3:772939/1‑151 (MQ=255)

                   gaagGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTggg                                                                                                                            >  4:364554/1‑151 (MQ=255)

                    aagGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTggg                                                                                                                            >  4:366746/1‑150 (MQ=255)

                    aagGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGa                                                                                                                           <  3:587477/151‑1 (MQ=255)

                    aagGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGa                                                                                                                           <  4:337415/151‑1 (MQ=255)

                          cTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTAc                                                                                                                     >  2:1315571/1‑151 (MQ=255)

                           tgtgACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACg                                                                                                                    >  1:9072/1‑151 (MQ=255)

                            gtgACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGt                                                                                                                   >  2:588582/1‑151 (MQ=255)

                              gaccacgaccacGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGtt                                                                                                                  <  3:769706/150‑1 (MQ=255)

                                 cacgaccacgCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCGCCTGGGACGGTACGTTGACt                                                                                                              <  4:431058/151‑1 (MQ=255)

                                         cgCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGgc                                                                                                        >  3:709657/1‑149 (MQ=255)

                                             gTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACt                                                                                                  <  2:1227111/151‑1 (MQ=255)

                                              tttGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTg                                                                                                 >  1:479122/1‑151 (MQ=255)

                                                 ggTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTgcg                                                                                               <  3:368060/150‑1 (MQ=255)

                                                  gtgtTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGcc                                                                                             <  2:1399065/151‑1 (MQ=255)

                                                    gtTGGGCTACAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTAACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCg                                                                                            <  3:917296/150‑1 (MQ=255)

                                                    gtTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCg                                                                                            >  3:1117077/1‑150 (MQ=255)

                                                      tGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGaa                                                                                          <  3:815250/150‑1 (MQ=255)

                                                       gAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAAc                                                                                         <  2:497173/150‑1 (MQ=255)

                                                       gAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACg                                                                                        >  4:266737/1‑151 (MQ=255)

                                                       gAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACg                                                                                        <  3:1400951/151‑1 (MQ=255)

                                                              aaCAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCtt                                                                                  >  3:57429/1‑150 (MQ=255)

                                                              aaCAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTa                                                                                 <  3:371997/151‑1 (MQ=255)

                                                               aCAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTAc                                                                                <  2:839810/151‑1 (MQ=255)

                                                                 aGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACa                                                                               >  2:971562/1‑150 (MQ=255)

                                                                   gcggcAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATg                                                                            <  2:220424/151‑1 (MQ=255)

                                                                       cAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGc                                                                        <  3:1222689/151‑1 (MQ=255)

                                                                        aGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCg                                                                       >  1:371677/1‑151 (MQ=255)

                                                                         gACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCg                                                                       >  3:1177383/1‑150 (MQ=255)

                                                                            aaaGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGAtt                                                                    <  3:520244/150‑1 (MQ=255)

                                                                             aaGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAg                                                                  <  2:472210/151‑1 (MQ=255)

                                                                              aGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAgc                                                                 <  3:391704/151‑1 (MQ=255)

                                                                                 tACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGcc                                                              >  3:1110752/1‑151 (MQ=255)

                                                                                  aCGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCa                                                             <  4:444878/151‑1 (MQ=255)

                                                                                   cGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAg                                                            <  2:330591/151‑1 (MQ=255)

                                                                                    ggCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGt                                                           <  2:12735/151‑1 (MQ=255)

                                                                                     gCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTa                                                          <  3:1166720/151‑1 (MQ=255)

                                                                                       caccaTCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAAc                                                        <  4:280880/151‑1 (MQ=255)

                                                                                       caccaTCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAAc                                                        <  3:422619/151‑1 (MQ=255)

                                                                                       caccaTCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAAc                                                        <  3:935669/151‑1 (MQ=255)

                                                                                       caccaTCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAAc                                                        <  4:176900/151‑1 (MQ=255)

                                                                                       caccaTCACCGATAAAAATGGCGCGATTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAAc                                                        >  3:562974/1‑151 (MQ=255)

                                                                                            tCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACggtgg                                                   >  4:181902/1‑151 (MQ=255)

                                                                                            tCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACggtgg                                                   >  1:195678/1‑151 (MQ=255)

                                                                                              aCCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACggtggt                                                  >  3:195056/1‑150 (MQ=255)

                                                                                              aCCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACggtggt                                                  >  4:158357/1‑150 (MQ=255)

                                                                                               ccGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGGGGTac                                                >  2:580204/1‑151 (MQ=255)

                                                                                                cGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTac                                                >  4:100327/1‑150 (MQ=255)

                                                                                                cGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTac                                                >  2:761726/1‑150 (MQ=255)

                                                                                                 gATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTacac                                              <  4:26320/151‑1 (MQ=255)

                                                                                                   tAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTAcaca                                             >  1:78502/1‑150 (MQ=255)

                                                                                                      aaaTGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTg                                         >  2:912344/1‑151 (MQ=255)

                                                                                                      aaaTGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTg                                         <  2:1117024/151‑1 (MQ=255)

                                                                                                       aaTGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTgg                                        >  3:58680/1‑151 (MQ=255)

                                                                                                       aaTGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTgg                                        >  3:1140222/1‑151 (MQ=255)

                                                                                                        aTGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCTCAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGt                                       >  1:24734/1‑151 (MQ=255)

                                                                                                           gcgcGGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGc                                    >  2:112903/1‑151 (MQ=255)

                                                                                                            cgcgGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGcc                                   >  3:605026/1‑151 (MQ=255)

                                                                                                              cgGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGccc                                  >  3:311391/1‑150 (MQ=255)

                                                                                                              cgGTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCa                                 <  2:487761/151‑1 (MQ=255)

                                                                                                               ggTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCa                                 <  3:1315641/150‑1 (MQ=255)

                                                                                                                gTTGTGCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGc                               >  2:1040463/1‑151 (MQ=255)

                                                                                                                 ttGTGCGCACCATTGATATTGGTGAACTGACTGCCGGATTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGcc                              >  1:118026/1‑151 (MQ=255)

                                                                                                                  tgtgCGCACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCg                             >  1:169315/1‑151 (MQ=255)

                                                                                                                      cgcACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGc                         >  2:199511/1‑151 (MQ=255)

                                                                                                                       gcACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGc                         >  3:377476/1‑150 (MQ=255)

                                                                                                                       gcACCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCa                        <  3:512013/151‑1 (MQ=255)

                                                                                                                         aCCATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGt                      >  3:284644/1‑151 (MQ=255)

                                                                                                                         aCCATTGATATAGGTTAACTGACTGCCGGACGTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCCGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAACGCCAGTAACGGCGGTACACAACTGGTTGCCCAGCCGCTg                          >  3:995722/1‑147 (MQ=255)

                                                                                                                          ccATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGtt                     >  3:719015/1‑151 (MQ=255)

                                                                                                                          ccATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGtt                     >  2:1179859/1‑151 (MQ=255)

                                                                                                                          ccATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGtt                     <  2:792465/151‑1 (MQ=255)

                                                                                                                           cATTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGttt                    >  1:94998/1‑151 (MQ=255)

                                                                                                                            aTTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTg                   >  1:225923/1‑151 (MQ=255)

                                                                                                                            aTTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTg                   <  2:772904/151‑1 (MQ=255)

                                                                                                                            aTTGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTg                   <  2:1364676/151‑1 (MQ=255)

                                                                                                                             ttGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGc                  >  3:560553/1‑151 (MQ=255)

                                                                                                                             ttGATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGc                  >  4:277631/1‑151 (MQ=255)

                                                                                                                               gATATTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGctc                >  1:137958/1‑151 (MQ=255)

                                                                                                                                atatTGGTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACACTGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGctct               >  2:1284739/1‑151 (MQ=255)

                                                                                                                                     ggTGAACTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGCTCTGGTGc          <  1:121052/151‑1 (MQ=255)

                                                                                                                                          actgactgCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGCTCTGGTGCAggg      >  3:355641/1‑150 (MQ=255)

                                                                                                                                          actgactgCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGCTCTGGTGCAggg      >  3:1403087/1‑150 (MQ=255)

                                                                                                                                           cTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGCTCTGGTGCAGGgtg    >  1:352113/1‑151 (MQ=255)

                                                                                                                                           cTGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGCTCTGGTGCAGGgtg    >  2:17235/1‑151 (MQ=255)

                                                                                                                                            tGACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGCTCTGGTGCAGGgtgt   >  3:1147588/1‑151 (MQ=255)

                                                                                                                                             gACTGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGCTCTGGTGCAGGGtgtg  >  4:17931/1‑151 (MQ=255)

TGCGGGAACCGGCAGTGAAGAAGGGGCTGTGACCACGACCACGCCGTTTGGTGTTGAGCTGCAACAGGCGGCAGACAAAGTTACGGCCACCATCACCGATAAAAATGGCGCGGTTGTGCGCACCATTGATATTGGTGAACTGACCGCCGGAGTTCACAGTTTCACCTGGGACGGTACGTTGACTGATGGCAGCACTGCGCCGAACGGTTCTTACAATGTAGCGATTAGCGCCAGTAACGGTGGTACACAACTGGTTGCCCAGCCGCTGCAGTTTGCTCTGGTGCAGGGTGTG  >  NC_000913/1132177‑1132468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`