Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,646,854 C→T intergenic (+117/+320) flxA → / ← intK Qin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,646,8540CT100.0% 362.4 / NA 91intergenic (+117/+320)flxA/intKQin prophage; uncharacterized protein/pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (51/40);  total (51/40)

ATACCGCTGGCACCATTGATATTTACGTCTAAGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAG  >  NC_000913/1646706‑1647000
                                                                                                                                                    |                                                                                                                                                  
aTACCGCTGGCACCATTGATATTTACGTCTAAGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGc                                                                                                                                                  <  1:89153/151‑1 (MQ=255)
aTACCGCTGGCACCATTGATATTTACGTCTAAGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGc                                                                                                                                                  >  3:206430/1‑151 (MQ=255)
 tACCGCTGGCACCATTGATATTTACGTCTAAGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGc                                                                                                                                                  >  2:827892/1‑150 (MQ=255)
 tACCGCTGGCACCATTATATTTACGTCTAAGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCAc                                                                                                                                                >  2:551679/1‑151 (MQ=255)
  aCCGCTGGCACCATTGATATTTACGTCTAAGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCa                                                                                                                                                 <  4:259378/150‑1 (MQ=255)
     gCTGGCACCATTGATATTTACGTCTAAGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTcc                                                                                                                                             >  4:463944/1‑151 (MQ=255)
     gCTGGCACCATTGATATTTACGTCTAAGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTcc                                                                                                                                             >  2:1208579/1‑151 (MQ=255)
         gCACCATTGATATTTACGTCTAAGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAAt                                                                                                                                         <  3:42656/151‑1 (MQ=255)
          cACCATTGATATTTACGTCTAAGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAAtt                                                                                                                                        <  3:218825/151‑1 (MQ=255)
          cACCATTGATATTTACGTCTAAGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAAtt                                                                                                                                        >  3:1227368/1‑151 (MQ=255)
                tGATATTTACGTCTAAGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCt                                                                                                                                   >  3:872622/1‑150 (MQ=255)
                 gATATTTACGTCTAAGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTAt                                                                                                                                 <  4:192539/151‑1 (MQ=255)
                 gATATTTACGTCTAAGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTAt                                                                                                                                 <  3:555594/151‑1 (MQ=255)
                  atatTTACGTCTAAGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTAtt                                                                                                                                >  3:889187/1‑151 (MQ=255)
                  atatTTACGTCTAAGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTAtt                                                                                                                                >  2:1277948/1‑151 (MQ=255)
                   tatTTACGTCTAAGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTAttt                                                                                                                               >  2:153611/1‑151 (MQ=255)
                    atTTACGTCTAAGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTAttt                                                                                                                               >  3:816637/1‑150 (MQ=255)
                            cTAAGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGcc                                                                                                                       >  2:1317841/1‑150 (MQ=255)
                              aaGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACg                                                                                                                    <  1:225631/151‑1 (MQ=255)
                                gTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAg                                                                                                                  <  3:740706/151‑1 (MQ=255)
                                    cAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGttt                                                                                                               >  3:1405515/1‑150 (MQ=255)
                                    cAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTa                                                                                                              <  4:342126/151‑1 (MQ=255)
                                         gTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGa                                                                                                         <  3:874104/151‑1 (MQ=255)
                                           aTTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACa                                                                                                       <  2:1343125/151‑1 (MQ=255)
                                              gtgGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAAc                                                                                                     <  4:359051/150‑1 (MQ=255)
                                                      cATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGAt                                                                                              <  3:1140442/149‑1 (MQ=255)
                                                      cATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCa                                                                                            <  2:806035/151‑1 (MQ=255)
                                                           ggCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTa                                                                                        >  2:361890/1‑150 (MQ=255)
                                                                  tttCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTg                                                                                 <  3:1297789/150‑1 (MQ=255)
                                                                  tttCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTg                                                                                 <  3:502099/150‑1 (MQ=255)
                                                                    tCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCa                                                                               <  1:11309/150‑1 (MQ=255)
                                                                          tCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTAttt                                                                        >  2:480193/1‑151 (MQ=255)
                                                                           cAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTc                                                                       >  3:870306/1‑151 (MQ=255)
                                                                            aGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCt                                                                      >  3:365719/1‑151 (MQ=255)
                                                                            aGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCt                                                                      >  3:257987/1‑151 (MQ=255)
                                                                            aGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCt                                                                      <  2:889150/151‑1 (MQ=255)
                                                                             gCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTg                                                                     <  2:247464/151‑1 (MQ=255)
                                                                              ccTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCTCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGt                                                                    >  4:309568/1‑151 (MQ=255)
                                                                               cTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGt                                                                    >  2:86264/1‑150 (MQ=255)
                                                                                 tttCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAg                                                                  <  2:60784/150‑1 (MQ=255)
                                                                                  ttCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTc                                                                >  3:121962/1‑151 (MQ=255)
                                                                                  ttCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTc                                                                >  2:475009/1‑151 (MQ=255)
                                                                                   tCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTc                                                                >  2:93913/1‑150 (MQ=255)
                                                                                   tCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTc                                                                >  3:206962/1‑150 (MQ=255)
                                                                                     tttAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACt                                                             >  3:114736/1‑151 (MQ=255)
                                                                                      ttAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCa                                                               <  3:1362384/148‑1 (MQ=255)
                                                                                       tAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACttt                                                           >  3:577069/1‑151 (MQ=255)
                                                                                          aGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTtgt                                                        <  3:610800/151‑1 (MQ=255)
                                                                                          aGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTtgt                                                        >  1:391197/1‑151 (MQ=255)
                                                                                             cATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTggg                                                     >  3:1034099/1‑151 (MQ=255)
                                                                                               tattatCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTgggg                                                    >  1:23791/1‑150 (MQ=255)
                                                                                               tattatCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTgggg                                                    >  4:428812/1‑150 (MQ=255)
                                                                                                  tatCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGAc                                                  >  2:799087/1‑149 (MQ=255)
                                                                                                   atCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAg                                                <  3:790792/150‑1 (MQ=255)
                                                                                                   atCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGt                                               >  2:200203/1‑151 (MQ=255)
                                                                                                     cTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTcc                                             >  1:343623/1‑151 (MQ=255)
                                                                                                      tttGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTcc                                             >  3:562900/1‑150 (MQ=255)
                                                                                                        tGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCcac                                           <  2:206401/150‑1 (MQ=255)
                                                                                                         gTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCcaca                                          <  2:645939/150‑1 (MQ=255)
                                                                                                         gTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCcaca                                          <  3:480228/150‑1 (MQ=255)
                                                                                                          tATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACaa                                         >  4:350242/1‑150 (MQ=255)
                                                                                                           aTCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACaaaa                                       <  2:357028/151‑1 (MQ=255)
                                                                                                           aTCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACaaa                                        >  1:380039/1‑150 (MQ=255)
                                                                                                           aTCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACaaa                                        >  2:334854/1‑150 (MQ=255)
                                                                                                           aTCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACaaa                                        >  2:358324/1‑150 (MQ=255)
                                                                                                             cATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACt                                     >  3:1083303/1‑151 (MQ=255)
                                                                                                             cATTTCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACt                                     <  2:206933/151‑1 (MQ=255)
                                                                                                                ttCTGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGcc                                  >  3:1298265/1‑151 (MQ=255)
                                                                                                                   tGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAAc                               >  2:678288/1‑151 (MQ=255)
                                                                                                                   tGATAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAAc                               >  2:1186935/1‑151 (MQ=255)
                                                                                                                      tAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAAtt                                                                                         >  4:77783/1‑90 (MQ=255)
                                                                                                                      tAGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAAtt                                                                                         <  1:77783/90‑1 (MQ=255)
                                                                                                                       aGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTcc                           >  2:578565/1‑151 (MQ=255)
                                                                                                                       aGTTAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTcc                           <  2:816603/151‑1 (MQ=255)
                                                                                                                          tAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGct                        >  2:1282955/1‑151 (MQ=255)
                                                                                                                          tAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGct                        >  2:960767/1‑151 (MQ=255)
                                                                                                                          tAACATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGc                         <  2:1405444/150‑1 (MQ=255)
                                                                                                                           aaCATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGctt                       <  2:872587/151‑1 (MQ=255)
                                                                                                                           aaCATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGct                        <  3:1317912/150‑1 (MQ=255)
                                                                                                                            aCATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGcttc                      <  3:1208640/151‑1 (MQ=255)
                                                                                                                            aCATTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGcttc                      >  1:368292/1‑151 (MQ=255)
                                                                                                                              aTTACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGcttctt                    <  2:716708/151‑1 (MQ=255)
                                                                                                                               ttACAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTg                   >  4:323402/1‑151 (MQ=255)
                                                                                                                                 aCAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGct                 <  3:904630/151‑1 (MQ=255)
                                                                                                                                  cAAGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGctc                <  2:121947/151‑1 (MQ=255)
                                                                                                                                   aaGATATAAGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGctct               <  3:864798/151‑1 (MQ=255)
                                                                                                                                           aGTAATGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGAc       >  2:902954/1‑151 (MQ=255)
                                                                                                                                              aaTGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACAtt    >  2:1221782/1‑151 (MQ=255)
                                                                                                                                              aaTGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACAtt    >  4:54507/1‑151 (MQ=255)
                                                                                                                                              aaTGGATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACAt     <  3:781152/150‑1 (MQ=255)
                                                                                                                                                 ggATGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAg  <  3:551710/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
ATACCGCTGGCACCATTGATATTTACGTCTAAGTGACAGCCGTATTGTGGCCCTCATCGGGCCACTTTTCGCCATCAGCCTTTTCTTTAAAGACATATTATCTTTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGACAACCCATGATCAATTATGAATTGCAACTATTTCTGTAGTCACTTTTGTGGGGACAGTCCACAAAACTGCCAACTTCCGCTTCTTGCTCTTAGCGGACATTAG  >  NC_000913/1646706‑1647000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: