Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	393,298	T→C	pseudogene (329/1449 nt)	yaiT →	pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	393,298	0	T	C	100.0%	299.2 / NA	76	pseudogene (329/1449 nt)	yaiT	pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (35/41);  total (35/41)

CGCTGATCTGGTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAA  >  NC_000913/393155‑393442                                                                                                                                                |                                                                                                                                                 cGCTGATCTGGTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAAt                                                                                                                                           <  2:765862/151‑1 (MQ=255) cGCTGATCTGGTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAAt                                                                                                                                           <  1:138193/151‑1 (MQ=255) cGCTGATCTGGTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAAt                                                                                                                                           >  2:261172/1‑151 (MQ=255)    tGATCTGGTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAAtgtt                                                                                                                                        >  2:723617/1‑151 (MQ=255)    tGATCTGGTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAAtgtt                                                                                                                                        >  2:698123/1‑151 (MQ=255)      aTCTGGTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAAtgttgt                                                                                                                                      >  2:33536/1‑151 (MQ=255)       tCTGGTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATgttgtt                                                                                                                                     >  2:894018/1‑151 (MQ=255)        cTGGTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGttgttg                                                                                                                                    >  2:365466/1‑151 (MQ=255)          ggTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAAtgttgt                                                                                                                                      <  1:358911/147‑1 (MQ=255)          ggTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATgttgtt                                                                                                                                     <  1:984372/148‑1 (MQ=255)          ggTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTtgc                                                                                                                                   <  2:682041/150‑1 (MQ=255)              aaCGACCGTACCTGGGATCCTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTGCTGAACTGGATAACAGCTCTGCAGACAATGTTGTtgctg                                                                                                                                 >  2:830223/1‑148 (MQ=255)              aaCGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCaa                                                                                                                              <  2:526753/151‑1 (MQ=255)               aCGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAAc                                                                                                                             >  2:979870/1‑151 (MQ=255)               aCGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAAc                                                                                                                             >  2:309248/1‑151 (MQ=255)                   ccGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGt                                                                                                                         <  1:736349/151‑1 (MQ=255)                    cGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTa                                                                                                                        <  1:1050322/151‑1 (MQ=255)                     gTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTaa                                                                                                                       <  2:912063/151‑1 (MQ=255)                           gggATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACa                                                                                                                  >  1:133128/1‑150 (MQ=255)                             gATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACaa                                                                                                                 >  2:558163/1‑149 (MQ=255)                              aTACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTTCaaa                                                                                                                <  2:414156/149‑1 (MQ=255)                                aCTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTc                                                                                                            <  1:75638/151‑1 (MQ=255)                                   tCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGt                                                                                                          <  1:482087/150‑1 (MQ=255)                                   tCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGt                                                                                                          >  1:209569/1‑150 (MQ=255)                                    ccAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTAt                                                                                                        >  2:775465/1‑151 (MQ=255)                                      aaGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAGCCGGTAACTACAAAGTTCGTAt                                                                                                        <  2:496004/149‑1 (MQ=255)                                      aaGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCg                                                                                                      <  1:779084/151‑1 (MQ=255)                                           tAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAAc                                                                                                 >  1:908101/1‑151 (MQ=255)                                              cTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGc                                                                                               >  1:837861/1‑150 (MQ=255)                                                acggttacggtATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCa                                                                                              <  2:675754/149‑1 (MQ=255)                                                   gttacggtATTGTTGCGATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAActgg                                                                                         <  2:1020812/151‑1 (MQ=255)                                                      acggtATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAActggcgc                                                                                      >  2:1020019/1‑151 (MQ=255)                                                        ggtATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAActggcgctg                                                                                    >  1:1060099/1‑151 (MQ=255)                                                        ggtATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAActggcgctg                                                                                    <  2:800356/151‑1 (MQ=255)                                                         gtATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAActggcgctgg                                                                                   <  2:468071/151‑1 (MQ=255)                                                                 gCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATc                                                                            <  1:655010/150‑1 (MQ=255)                                                                  cTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGc                                                                          >  1:362054/1‑151 (MQ=255)                                                                    aTGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTg                                                                        <  2:2037/151‑1 (MQ=255)                                                                    aTGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTg                                                                        >  2:206876/1‑151 (MQ=255)                                                                     tGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTg                                                                        >  1:556453/1‑150 (MQ=255)                                                                        aCTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGAtt                                                                     >  2:630618/1‑150 (MQ=255)                                                                        aCTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGAtt                                                                     >  2:551085/1‑150 (MQ=255)                                                                        aCTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGAtt                                                                     >  1:506133/1‑150 (MQ=255)                                                                           ctGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACa                                                                  >  2:568567/1‑150 (MQ=255)                                                                             gATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACa                                                                  <  1:752180/148‑1 (MQ=255)                                                                              aTGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGa                                                              <  1:554576/151‑1 (MQ=255)                                                                                ggTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATa                                                            <  2:79857/151‑1 (MQ=255)                                                                                   cACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATaaa                                                          <  2:133123/150‑1 (MQ=255)                                                                                   cACCTGACTATCAACGGTAACGGCAACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATaa                                                           >  2:69815/1‑149 (MQ=255)                                                                                     ccTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGa                                                        >  1:68861/1‑150 (MQ=255)                                                                                        gACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAAt                                                     <  2:87466/150‑1 (MQ=255)                                                                                        gACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAAt                                                     <  1:665588/150‑1 (MQ=255)                                                                                             tCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCt                                                >  2:840184/1‑150 (MQ=255)                                                                                                aCGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGt                                            <  1:739262/151‑1 (MQ=255)                                                                                                aCGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGt                                            <  2:452379/151‑1 (MQ=255)                                                                                                   gTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTaaa                                         <  2:26252/151‑1 (MQ=255)                                                                                                         gCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGt                                   <  2:281124/151‑1 (MQ=255)                                                                                                          cGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTc                                  <  1:730736/151‑1 (MQ=255)                                                                                                                 gACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCa                           <  2:233289/151‑1 (MQ=255)                                                                                                                    aaCGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAAcg                        >  1:97359/1‑151 (MQ=255)                                                                                                                     aCGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAAcgc                       <  1:880858/151‑1 (MQ=255)                                                                                                                     aCGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAAcgc                       <  1:125391/151‑1 (MQ=255)                                                                                                                      cGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAAcgcg                      >  1:460817/1‑151 (MQ=255)                                                                                                                       ggTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGa                     <  2:155410/151‑1 (MQ=255)                                                                                                                          aCTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCt                  >  2:98093/1‑151 (MQ=255)                                                                                                                             gAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCtt                 <  2:330078/149‑1 (MQ=255)                                                                                                                             gAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTtc                <  2:1030527/150‑1 (MQ=255)                                                                                                                                  ggATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTctgct          <  2:698714/151‑1 (MQ=255)                                                                                                                                  ggATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTctgct          >  1:910546/1‑151 (MQ=255)                                                                                                                                  ggATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTctg            <  1:943043/149‑1 (MQ=255)                                                                                                                                   gATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTctgctg         >  1:163846/1‑151 (MQ=255)                                                                                                                                       aCAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTa      >  2:115374/1‑150 (MQ=255)                                                                                                                                         aGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACa   <  1:915073/151‑1 (MQ=255)                                                                                                                                         aGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACa   <  2:846367/151‑1 (MQ=255)                                                                                                                                            tctGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACaa  >  1:91428/1‑149 (MQ=255)                                                                                                                                            tctGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACaa  >  1:134663/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                 CGCTGATCTGGTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAA  >  NC_000913/393155‑393442

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑