Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,559,936	T→C	V360A (GTC→GCC)	intZ →	CPZ‑55 prophage; putative phage integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,559,936	0	T	C	100.0%	277.9 / NA	75	V360A (GTC→GCC)	intZ	CPZ‑55 prophage; putative phage integrase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (38/37);  total (38/37)

GTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTT  >  NC_000913/2559790‑2560083                                                                                                                                                   |                                                                                                                                                    gTCAGCCAGCGCGATACTTAAGGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGcccc                                                                                                                                                  <  2:989558/150‑1 (MQ=255) gTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGcccc                                                                                                                                                  <  2:979423/150‑1 (MQ=255)      ccagcGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAggg                                                                                                                                            >  1:549923/1‑151 (MQ=255)      ccagcGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAggg                                                                                                                                            >  1:902007/1‑151 (MQ=255)          cgcgATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATa                                                                                                                                        <  1:947424/151‑1 (MQ=255)            cgATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATa                                                                                                                                        >  1:440418/1‑149 (MQ=255)              aTACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAggg                                                                                                                                    >  1:1045171/1‑151 (MQ=255)              aTACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAggg                                                                                                                                    <  1:426017/151‑1 (MQ=255)                     aaGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTta                                                                                                                             <  2:687776/151‑1 (MQ=255)                     aaGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGGTta                                                                                                                             <  1:255337/151‑1 (MQ=255)                                   aTCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGcc                                                                                                                <  1:542341/150‑1 (MQ=255)                                     cGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTAc                                                                                                             <  1:782379/151‑1 (MQ=255)                                        gTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTg                                                                                                          <  1:815541/151‑1 (MQ=255)                                          aCAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGaa                                                                                                        <  1:969190/151‑1 (MQ=255)                                           cAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAg                                                                                                       <  1:165845/151‑1 (MQ=255)                                            aaGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGc                                                                                                      >  1:885151/1‑151 (MQ=255)                                               tCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAAc                                                                                                   >  2:581118/1‑151 (MQ=255)                                                cGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACg                                                                                                  >  2:56700/1‑151 (MQ=255)                                                       cacaGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGc                                                                                            >  1:1005376/1‑150 (MQ=255)                                                           ggCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAatg                                                                                        >  2:974004/1‑150 (MQ=255)                                                              cACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGc                                                                                    >  1:846348/1‑151 (MQ=255)                                                                cGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGc                                                                                    >  2:915094/1‑149 (MQ=255)                                                                 ggCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAgg                                                                                 <  2:530044/151‑1 (MQ=255)                                                                      gcgcACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTAc                                                                            <  1:177345/151‑1 (MQ=255)                                                                      gcgcACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTAc                                                                            <  2:375179/151‑1 (MQ=255)                                                                       cgcACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACg                                                                           >  2:776138/1‑151 (MQ=255)                                                                       cgcACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACg                                                                           >  1:181998/1‑151 (MQ=255)                                                                        gcACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGc                                                                          >  1:895304/1‑151 (MQ=255)                                                                          acaACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCg                                                                        <  1:455945/151‑1 (MQ=255)                                                                          acaACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCg                                                                        <  1:141383/151‑1 (MQ=255)                                                                           caACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGa                                                                       <  2:528880/151‑1 (MQ=255)                                                                             aCGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACg                                                                     >  2:912633/1‑151 (MQ=255)                                                                             aCGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACg                                                                     >  2:912620/1‑151 (MQ=255)                                                                             aCGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACg                                                                     >  1:1048927/1‑151 (MQ=255)                                                                              cGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGc                                                                    >  2:775862/1‑151 (MQ=255)                                                                              cGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGc                                                                    >  2:906554/1‑151 (MQ=255)                                                                                ttCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCt                                                                   >  1:910738/1‑150 (MQ=255)                                                                                ttCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCt                                                                   >  1:959043/1‑150 (MQ=255)                                                                                  cAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTAt                                                                 <  1:388479/150‑1 (MQ=255)                                                                                       ccGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTc                                                           <  1:581149/151‑1 (MQ=255)                                                                                          cACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAat                                                        <  1:739349/151‑1 (MQ=255)                                                                                              tAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAatat                                                      <  1:579373/149‑1 (MQ=255)                                                                                              tAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATAtt                                                     <  2:1022100/150‑1 (MQ=255)                                                                                               aaCGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGCAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTgg                                                   >  2:88246/1‑151 (MQ=255)                                                                                                  gAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAg                                                <  1:688022/151‑1 (MQ=255)                                                                                                   aaTCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAgg                                               >  2:25/1‑151 (MQ=255)                                                                                                   aaTCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAgg                                               >  1:821957/1‑151 (MQ=255)                                                                                                        ggCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACg                                          <  2:461305/151‑1 (MQ=255)                                                                                                         gCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACgg                                         <  1:825314/151‑1 (MQ=255)                                                                                                         gCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACgg                                         <  2:624709/151‑1 (MQ=255)                                                                                                          cAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACgg                                         >  2:569746/1‑150 (MQ=255)                                                                                                          cAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGc                                        <  1:729487/151‑1 (MQ=255)                                                                                                          cAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGc                                        <  1:579776/151‑1 (MQ=255)                                                                                                             aTACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAAt                                     >  2:316/1‑151 (MQ=255)                                                                                                                      ggattggattGAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGa                             >  1:1057174/1‑150 (MQ=255)                                                                                                                        attggattgAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAAcc                          >  1:860458/1‑151 (MQ=255)                                                                                                                        attggattgAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAAcc                          >  1:820708/1‑151 (MQ=255)                                                                                                                        attggattgAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAAcc                          >  1:690128/1‑151 (MQ=255)                                                                                                                              ttgAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGgaatg                    >  2:792702/1‑151 (MQ=255)                                                                                                                              ttgAGATCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGgaatg                    >  1:1036271/1‑151 (MQ=255)                                                                                                                                gagaTCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCg                                                                        >  1:970070/1‑97 (MQ=255)                                                                                                                                gagaTCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCg                                                                        <  2:970029/97‑1 (MQ=255)                                                                                                                                 agaTCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGgaatgaat                 <  1:783033/151‑1 (MQ=255)                                                                                                                                  gaTCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGgaatgaat                 >  2:86078/1‑150 (MQ=255)                                                                                                                                   aTCCAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGaata                >  2:24973/1‑150 (MQ=255)                                                                                                                                     ccAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAAtt             <  1:974045/151‑1 (MQ=255)                                                                                                                                     ccAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAAtt             >  1:175037/1‑151 (MQ=255)                                                                                                                                     ccAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAAtt             <  1:949135/151‑1 (MQ=255)                                                                                                                                      cAACTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTa            <  1:838182/151‑1 (MQ=255)                                                                                                                                       aaCTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTaa           <  1:120639/151‑1 (MQ=255)                                                                                                                                       aaCTAGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTaa           <  1:896236/151‑1 (MQ=255)                                                                                                                                         cTAACCCAAGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAGCCGGAATGaataat              <  1:200451/146‑1 (MQ=255)                                                                                                                                           aGCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCg        <  2:736610/150‑1 (MQ=255)                                                                                                                                            gCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCggt      <  1:912669/151‑2 (MQ=255)                                                                                                                                            gCCCACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGc      <  1:912656/151‑1 (MQ=255)                                                                                                                                             cccACGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCt     >  2:288306/1‑151 (MQ=255)                                                                                                                                                aCGCCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCtttt  >  1:578510/1‑151 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GTCAGCCAGCGCGATACTTAAAGCGCTTGAGCGTATCGGGTACAAGTCGATAGCCACAGGCCACGGCTGGCGCACAACGTTCAGCACCGCACTTAACGAATCAGGCAGATACTCGCCGGATTGGATTGAGATCCAACTAGCCCACGTCCCGAAGGGAATAAGGGGCGTTTATAACCAGGCTGCCTACCTGAAGCAACGGCGAGCAATGATGCAGGATTACGCCGACGCTATTGATTCAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTT  >  NC_000913/2559790‑2560083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑