BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,223,586	C→T	V15I (GTT→ATT)	iclR ←	transcriptional repressor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,223,586	0	C	T	100.0%	595.8 / NA	143	V15I (GTT→ATT)	iclR	transcriptional repressor
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (55/88); total (55/88)

Only 100 of 147 total aligned reads displayed.

AGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCA  >  NC_000913/4223438‑4223732

aGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAAtgg                                                                                                                                                  <  2:470952/151‑1 (MQ=255)

aGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAAtgg                                                                                                                                                  >  1:954748/1‑151 (MQ=255)

 gCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGAATCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAAtgg                                                                                                                                                  >  2:169385/1‑150 (MQ=255)

    ggCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCggg                                                                                                                                              <  1:968948/151‑1 (MQ=255)

          gggTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCTAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCt                                                                                                                                        <  1:1142555/151‑1 (MQ=255)

          gggTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCt                                                                                                                                        <  1:160848/151‑1 (MQ=255)

            gTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGc                                                                                                                                      <  1:635709/151‑1 (MQ=255)

                tGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGGTTTTTGCcgc                                                                                                                                   >  2:1502455/1‑150 (MQ=255)

                 ggAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCcgcg                                                                                                                                  <  1:3767/150‑1 (MQ=255)

                  gAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCggg                                                                                                                                              <  2:2101220/137‑1 (MQ=255)

                    aTTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAGTCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTc                                                                                                                              <  2:896419/151‑1 (MQ=255)

                       gggTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTcgcg                                                                                                                           <  2:153236/151‑1 (MQ=255)

                       gggTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTcgcg                                                                                                                           <  2:102182/151‑1 (MQ=255)

                           aaCCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTTTGCCCGGTTTccgggg                                                                                                                         >  1:745130/1‑144 (MQ=255)

                           aaCCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGaa                                                                                                                       <  1:1302560/151‑1 (MQ=255)

                            aCCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAAt                                                                                                                      <  2:1772276/151‑1 (MQ=255)

                             cccGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATg                                                                                                                     <  2:1155250/151‑1 (MQ=255)

                              ccGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGGTTTCTTCCGCGTTTCGCGGGGATgg                                                                                                                    >  2:354849/1‑151 (MQ=255)

                               cGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGGTTTTTGCCGCGTTTCGCGGGGATggg                                                                                                                   >  2:89680/1‑151 (MQ=255)

                                    tgttgCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGc                                                                                                                <  2:615274/149‑1 (MQ=255)

                                    tgttgCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGc                                                                                                                <  2:1240013/149‑1 (MQ=255)

                                     gttgCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGAc                                                                                                             <  2:1438217/151‑1 (MQ=255)

                                      ttgCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGGTTTCTGCCGCGTTTCGCGGGGATGGGGGCGAcc                                                                                                            >  1:173548/1‑151 (MQ=255)

                                       tgCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTTTGCCGCGTTTCCCGGGAATGGGGGCGGcc                                                                                                            >  1:2144472/1‑150 (MQ=255)

                                       tgCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGAcc                                                                                                            <  2:534243/150‑1 (MQ=255)

                                        gcgcCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCa                                                                                                           <  1:15423/150‑1 (MQ=255)

                                        gcgcCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCAt                                                                                                          <  1:1648091/151‑1 (MQ=255)

                                        gcgcCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCAt                                                                                                          <  1:213335/151‑1 (MQ=255)

                                         cgcCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATg                                                                                                         <  1:1257439/151‑1 (MQ=255)

                                         cgcCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATg                                                                                                         <  1:1275973/151‑1 (MQ=255)

                                           ccAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGAc                                                                                                       <  1:1750896/151‑1 (MQ=255)

                                              gTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGt                                                                                                    <  2:1855455/151‑1 (MQ=255)

                                                tCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGtc                                                                                                   <  2:2009744/150‑1 (MQ=255)

                                                tCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGGTTTTTGCCGCGGTTCGCGGGAATGGGGGCGGCCaaggacg                                                                                                     >  1:1220797/1‑142 (MQ=255)

                                                   gTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCtt                                                                                               <  1:2133872/151‑1 (MQ=255)

                                                     gAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGGCCATGACAGTCTCtttt                                                                                             >  1:1594849/1‑151 (MQ=255)

                                                     gAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCtttt                                                                                             <  2:393973/151‑1 (MQ=255)

                                                     gAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCtttt                                                                                             <  1:313707/151‑1 (MQ=255)

                                                     gAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCttt                                                                                              <  1:73486/150‑1 (MQ=255)

                                                     gAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCttt                                                                                              <  1:897781/150‑1 (MQ=255)

                                                       gTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCtttttt                                                                                           <  1:398752/151‑1 (MQ=255)

                                                         gCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCt                                                                                         <  2:769933/151‑1 (MQ=255)

                                                             cacTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTAt                                                                                     <  1:1307071/151‑1 (MQ=255)

                                                             cacTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTAt                                                                                     <  2:581587/151‑1 (MQ=255)

                                                             cacTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTAt                                                                                     <  1:2043242/151‑1 (MQ=255)

                                                             cacTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTGCTGTAt                                                                                     <  1:16655/151‑1 (MQ=255)

                                                             cacTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGACAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTAt                                                                                     <  2:126856/151‑1 (MQ=255)

                                                              acTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGGTTTCTGCCGCGTTTCGCGGGGATGGGTGCGACCATGACAGTCTCTTTTTTTTGTAt                                                                                     >  2:1079764/1‑150 (MQ=255)

                                                                 gCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCg                                                                                   <  2:1508897/149‑1 (MQ=255)

                                                                 gCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCg                                                                                   <  1:430178/149‑1 (MQ=255)

                                                                 gCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCg                                                                                   <  2:424965/149‑1 (MQ=255)

                                                                 gCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGt                                                                                  <  2:1334701/150‑1 (MQ=255)

                                                                   cATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGa                                                                               <  1:900759/151‑1 (MQ=255)

                                                                    aTTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGaa                                                                              <  1:250452/151‑1 (MQ=255)

                                                                      tGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGaaa                                                                             <  1:832433/150‑1 (MQ=255)

                                                                         aTTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAAtcat                                                                         <  2:559549/151‑1 (MQ=255)

                                                                            cGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGGGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAAtcatttt                                                                      >  2:735761/1‑151 (MQ=255)

                                                                            cGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGGTTTCTGCCCCGGTTCGCGGGGATGGGTGCGACCATGACAGTCTCTTTTTTTTGTATCGTGGAAAtcatttt                                                                      >  2:263437/1‑151 (MQ=255)

                                                                             ggCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAAtcattttc                                                                     <  2:952820/151‑1 (MQ=255)

                                                                              gCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGGATGGGTGCGACCATGACAGTCTCTTTTTTTTGTTTCGTGGGAAtcatttt                                                                      >  2:1341758/1‑149 (MQ=255)

                                                                              gCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAAtcattttca                                                                    <  1:1003674/151‑1 (MQ=255)

                                                                               cAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGGTTTCTGCCGCGGTTCGCGGGGATGGGGGCGACCATGGAAGTCTCTTTTTTCTTTATTGTGGAAAtcatttt                                                                      >  2:1298056/1‑148 (MQ=255)

                                                                                 aTCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGGTTTTTGCCGCGGTTTGCGGGGATGGGGGCGACCATGACAGTCTCTTTTTTTTGTATCGTGGGAAtcatttttattt                                                                 >  2:1237401/1‑151 (MQ=255)

                                                                                   ccACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATcattttcatttt                                                                <  1:104267/150‑1 (MQ=255)

                                                                                        ccAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTAtt                                                            <  2:777889/149‑1 (MQ=255)

                                                                                        ccAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGt                                                          <  2:1880823/151‑1 (MQ=255)

                                                                                         cAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGtt                                                         <  2:1499072/151‑1 (MQ=255)

                                                                                           gTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAg                                                       <  1:1387557/151‑1 (MQ=255)

                                                                                             aaTTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGGTTTCTGCCGCGTTTCGCGGGGATGGGGGCGACCATGACAGTCTCTTTTTTTTGTTTCGGGGGAATCATTTTCATTTTTTTTTTTAGCt                                                     >  2:1206235/1‑151 (MQ=255)

                                                                                                 tCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAAt                                                  <  1:274476/150‑1 (MQ=255)

                                                                                                 tCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAAt                                                  <  1:1602626/150‑1 (MQ=255)

                                                                                                  cAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGc                                                <  1:1078371/151‑1 (MQ=255)

                                                                                                        aCGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGt                                          <  1:1933327/151‑1 (MQ=255)

                                                                                                          gcgTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTTTGGCGCGGTTTGCGGGGATTGGGGCGACCCTGGCAGTCTCTTTTTTTTTTTTTGTGGGAATTATTTTTATTTTTTTTGTTTGCTAATTCAATAAtt                                         >  2:808791/1‑150 (MQ=255)

                                                                                                           cgTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGGATGGGTGCGACCATGACAGTCTCTTTTTTCTTTATCGTGGAAATCATTTTCATTTTTTTTGTTAGCTTATTCAATAGtt                                         >  2:377798/1‑149 (MQ=255)

                                                                                                           cgTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGGGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGtt                                         >  1:1155584/1‑149 (MQ=255)

                                                                                                            gTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGGTTCGCGGGAATGGGGGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTact                                      >  2:1552214/1‑151 (MQ=255)

                                                                                                                 aGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTactgaact                                 <  1:976419/151‑1 (MQ=255)

                                                                                                                  gACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGGTTCGCGGGAATGGGTGGGACCATGACAGTCTCTTTTTTCTGTATCGGGGAAATCATTTTCATTTTTTTTGTTAGCTAATGCAATAGTTactgaact                                 >  1:1173252/1‑150 (MQ=255)

                                                                                                                   aCTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAAAGGGTGCGACCATGACAAGCTCTTTTTTCTGTATCTTGGGAATTCTTTTCATTTTTATTTTTTGCTAATGCAATAGTTtcttaa                                   >  2:1445290/1‑147 (MQ=255)

                                                                                                                    cTGAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGGTTTCTGCCGCGTTTCGCGGGGATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGGAATCATTTTCATTTTTATTTTTAGCTAATGCAATAGTTACTGAACTGAt                              >  1:631928/1‑151 (MQ=255)

                                                                                                                      gAACCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGAt                              <  2:1198504/149‑1 (MQ=255)

                                                                                                                        aCCTGTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGGTTCGGCGGGATGGGGGCGCCCATGACCGTTTCTTTTTTTTTTATCGAGGGAATACGTTTCATTTTTTTTTTTTAGTAATGCAAAAATTACTGAACTGATcc                            >  1:1837049/1‑149 (MQ=255)

                                                                                                                            gTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGa                       <  2:2114347/150‑1 (MQ=255)

                                                                                                                            gTCCAGTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAg                      <  2:744628/151‑1 (MQ=255)

                                                                                                                                 gTCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAAt                 <  2:1792293/151‑1 (MQ=255)

                                                                                                                                  tCGCTGGTGCGGTGGCAATGGCGGGTTTTTTGCCGCGTTTCGCGGGAATGGGGGCGGCCATGACAGGCTCTTTTTTCTGTATCGTGGGAATCATTTTTATTTTTTTTGTTAGCTAATGCCATAGTTACTGAACTGATCCGATGAGttta                  >  2:1701560/1‑147 (MQ=255)

                                                                                                                                  tCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTTGCGGGGATGGGGGCGGCCATGACAGTCTCTTTTTTTTGTATCGTGGGAATTATTTTCTTTTTTTTTGTTAGCTTATGCAATAGTTATTGAACTGATCCCATGAGtt                    >  2:266819/1‑147 (MQ=255)

                                                                                                                                  tCGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGGGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTTTTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAAt                 >  1:577468/1‑150 (MQ=255)

                                                                                                                                   cGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATg                <  1:1985779/150‑1 (MQ=255)

                                                                                                                                   cGCTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGGTTCGCGGGAATGGGGGCGGCCATGACAGTCTCTTTTTTTTGTATCGTGGGAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGt               >  2:1076348/1‑151 (MQ=255)

                                                                                                                                     cTGGTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGtt              >  1:847120/1‑150 (MQ=255)

                                                                                                                                       ggTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGaa           <  2:1938267/151‑1 (MQ=255)

                                                                                                                                       ggTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGa            <  2:1541004/150‑1 (MQ=255)

                                                                                                                                        gTGCGGTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGAAc          <  1:130106/151‑1 (MQ=255)

                                                                                                                                             gTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGAACAAAtc     <  1:622977/151‑1 (MQ=255)

                                                                                                                                             gTGGCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGAACAAAtc     <  2:950030/151‑1 (MQ=255)

                                                                                                                                               ggCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGAACAAAtctc   <  2:1598127/151‑1 (MQ=255)

                                                                                                                                               ggCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGAACAAAtct    <  1:1482618/150‑1 (MQ=255)

                                                                                                                                                gCAATGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCa  <  2:822998/151‑1 (MQ=255)

AGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAGTGCCACACTGCCATTGGATTCGGCAATCCACTCCAGTAATTTCAGGCCACGCGTTAAAGACTGAACCTGTCCAGTCGCTGGTGCGGTGGCAACGGCGGGTTTTCTGCCGCGTTTCGCGGGAATGGGTGCGACCATGACAGTCTCTTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTACTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCA  >  NC_000913/4223438‑4223732

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`