BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	393,298	T→C	pseudogene (329/1449 nt)	yaiT →	pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	393,298	0	T	C	100.0%	564.0 / NA	141	pseudogene (329/1449 nt)	yaiT	pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (64/77); total (64/77)

Only 100 of 141 total aligned reads displayed.

GAACGCTGATCTGGTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAA  >  NC_000913/393152‑393443

 aaCGCTGATCTGGTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGAc                                                                                                                                               >  2:401046/1‑150 (MQ=255)

  aCGCTGATCTGGTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACaa                                                                                                                                             <  2:795087/151‑1 (MQ=255)

   cGCTGATCTGGTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAAt                                                                                                                                            <  1:1602937/151‑1 (MQ=255)

      tGATCTGGTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAAtgtt                                                                                                                                         >  1:1072078/1‑151 (MQ=255)

       gATCTGGTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAAtgtt                                                                                                                                         <  2:950332/150‑1 (MQ=255)

        aTCTGGTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAAtgttgt                                                                                                                                       >  1:1646696/1‑151 (MQ=255)

            ggTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGttgttg                                                                                                                                     <  2:1539984/149‑1 (MQ=255)

            ggTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGttgttg                                                                                                                                     <  1:1222406/149‑1 (MQ=255)

             gTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACTGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTtgctg                                                                                                                                  <  2:1593785/151‑1 (MQ=255)

                aaCGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCaa                                                                                                                               <  2:682123/151‑1 (MQ=255)

                aaCGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCaa                                                                                                                               <  1:2017668/151‑1 (MQ=255)

                 aCGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAAc                                                                                                                              >  1:2073231/1‑151 (MQ=255)

                  cGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAAcc                                                                                                                             <  1:785035/151‑1 (MQ=255)

                  cGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAAcc                                                                                                                             <  2:786469/151‑1 (MQ=255)

                   gACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCg                                                                                                                            >  1:391557/1‑151 (MQ=255)

                   gACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCg                                                                                                                            >  1:1146055/1‑151 (MQ=255)

                   gACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCg                                                                                                                            >  2:1627939/1‑151 (MQ=255)

                   gACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCg                                                                                                                            <  2:1714662/151‑1 (MQ=255)

                   gACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCg                                                                                                                            >  1:1510875/1‑151 (MQ=255)

                        tACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAAc                                                                                                                       >  1:368755/1‑151 (MQ=255)

                              ggATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACaa                                                                                                                  >  2:668301/1‑150 (MQ=255)

                               gATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACaa                                                                                                                  >  1:1156747/1‑149 (MQ=255)

                                aTACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGt                                                                                                               >  1:1016293/1‑151 (MQ=255)

                                aTACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGt                                                                                                               >  1:352681/1‑151 (MQ=255)

                                aTACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGt                                                                                                               <  1:1411226/151‑1 (MQ=255)

                                  aCTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTc                                                                                                             >  1:1474517/1‑151 (MQ=255)

                                      ccAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTAt                                                                                                         >  2:417931/1‑151 (MQ=255)

                                      ccAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTAt                                                                                                         <  2:1770542/151‑1 (MQ=255)

                                       cAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATc                                                                                                        <  2:2031498/151‑1 (MQ=255)

                                        aaGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCg                                                                                                       <  1:1089892/151‑1 (MQ=255)

                                        aaGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCg                                                                                                       <  2:594794/151‑1 (MQ=255)

                                        aaGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCg                                                                                                       <  2:922725/151‑1 (MQ=255)

                                        aaGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCg                                                                                                       <  2:1154614/151‑1 (MQ=255)

                                         aGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCg                                                                                                       >  2:1815095/1‑150 (MQ=255)

                                            cTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACa                                                                                                    >  2:577420/1‑150 (MQ=255)

                                            cTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACa                                                                                                    >  2:1198955/1‑150 (MQ=255)

                                              aaCTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACa                                                                                                    <  2:1681232/148‑1 (MQ=255)

                                               aCTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGc                                                                                                <  1:1023554/151‑1 (MQ=255)

                                                cTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGc                                                                                                >  2:219642/1‑150 (MQ=255)

                                                cTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGc                                                                                                >  2:843415/1‑150 (MQ=255)

                                                   cggttacggtATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAAct                                                                                            <  1:170273/151‑1 (MQ=255)

                                                     gttacggtATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAActgg                                                                                          >  2:1157918/1‑151 (MQ=255)

                                                         cggtATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAActggcgct                                                                                      <  2:1219617/151‑1 (MQ=255)

                                                          ggtATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAActggcgctg                                                                                     >  1:941146/1‑151 (MQ=255)

                                                             aTTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAActggcgctggcg                                                                                  >  1:1016126/1‑151 (MQ=255)

                                                                gttgCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTa                                                                               <  1:1982116/151‑1 (MQ=255)

                                                                   gCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATc                                                                             <  1:500375/150‑1 (MQ=255)

                                                                   gCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCg                                                                            <  2:299416/151‑1 (MQ=255)

                                                                      aTGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGc                                                                           <  1:1739596/149‑1 (MQ=255)

                                                                      aTGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCt                                                                          <  1:243063/150‑1 (MQ=255)

                                                                      aTGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTg                                                                         >  1:1132915/1‑151 (MQ=255)

                                                                      aTGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTg                                                                         >  1:1287964/1‑151 (MQ=255)

                                                                       tGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTg                                                                         >  1:263280/1‑150 (MQ=255)

                                                                         aaCTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGAtt                                                                      <  2:493286/151‑1 (MQ=255)

                                                                              tGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACaa                                                                  >  2:1536515/1‑150 (MQ=255)

                                                                              tGATGGTCACCTGACTATCAACGGTAACGGCGACGCAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACATAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACa                                                                   >  1:262721/1‑149 (MQ=255)

                                                                               gATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACaa                                                                  >  1:895341/1‑149 (MQ=255)

                                                                                 tGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAAAGGAACTGAACTGGATAACAGCTCCGCAGACAATGTTGTTGCTGCAACCGGTAACTAAAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACa                                                                   >  1:1777244/1‑146 (MQ=255)

                                                                                  ggTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGAt                                                              <  2:1240647/150‑1 (MQ=255)

                                                                                    tCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATaa                                                            >  2:1632875/1‑150 (MQ=255)

                                                                                     cACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATaaa                                                           <  1:1320422/150‑1 (MQ=255)

                                                                                        cTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGaa                                                        <  1:705740/150‑1 (MQ=255)

                                                                                          gACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAAtt                                                     <  2:173300/151‑1 (MQ=255)

                                                                                                 aaCGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACg                                              <  1:1192653/151‑1 (MQ=255)

                                                                                                    ggTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTaa                                           <  2:1090737/151‑1 (MQ=255)

                                                                                                       aaCGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAac                                         <  1:407976/150‑1 (MQ=255)

                                                                                                       aaCGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAac                                         <  1:1026191/150‑1 (MQ=255)

                                                                                                         cGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAacgac                                      >  1:627887/1‑151 (MQ=255)

                                                                                                         cGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAacgac                                      <  1:2026720/151‑1 (MQ=255)

                                                                                                         cGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTAACTACGTAAacgac                                      <  2:1465114/151‑1 (MQ=255)

                                                                                                          ggCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAacgacg                                     <  1:1184575/151‑1 (MQ=255)

                                                                                                            cGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGGAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTc                                   >  1:1319454/1‑151 (MQ=255)

                                                                                                             gACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTc                                   >  1:272184/1‑150 (MQ=255)

                                                                                                             gACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTc                                   >  2:232433/1‑150 (MQ=255)

                                                                                                             gACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTc                                   >  1:263446/1‑150 (MQ=255)

                                                                                                             gACGTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCa                                  <  2:318839/151‑1 (MQ=255)

                                                                                                                gTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATaaa                                                           >  1:1149232/1‑123 (MQ=255)

                                                                                                                gTAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACa                               <  1:385913/151‑1 (MQ=255)

                                                                                                                 tAGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAAc                                >  1:1923946/1‑149 (MQ=255)

                                                                                                                  aGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAActggcgctggc                                                                                   >  2:168164/1‑97 (MQ=255)

                                                                                                                  aGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAActggcgctggc                                                                                   <  1:168165/97‑1 (MQ=255)

                                                                                                                  aGACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGc                             >  2:832398/1‑151 (MQ=255)

                                                                                                                   gACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTTCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCa                            <  1:436773/151‑1 (MQ=255)

                                                                                                                   gACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCa                            <  1:613459/151‑1 (MQ=255)

                                                                                                                   gACAACGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCa                            <  1:1953167/151‑1 (MQ=255)

                                                                                                                       aCGGTACTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAAcgc                        >  2:1313306/1‑151 (MQ=255)

                                                                                                                            aCTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGAcc                    <  2:807937/150‑1 (MQ=255)

                                                                                                                            aCTGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCt                   <  2:1057699/151‑1 (MQ=255)

                                                                                                                              tGAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTtc                 >  1:2044634/1‑151 (MQ=255)

                                                                                                                               gAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCtt                  <  2:368754/149‑1 (MQ=255)

                                                                                                                               gAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCtt                  <  1:1610223/149‑1 (MQ=255)

                                                                                                                               gAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCtt                  <  2:180225/149‑1 (MQ=255)

                                                                                                                               gAACTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTtc                 <  1:2059159/150‑1 (MQ=255)

                                                                                                                                 aCTGGATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTtctc               >  2:205878/1‑150 (MQ=255)

                                                                                                                                    ggATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTctgct           <  1:1004150/151‑1 (MQ=255)

                                                                                                                                     gATAACAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTctgctg          >  2:631014/1‑151 (MQ=255)

                                                                                                                                          cAGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAAc     <  2:486835/151‑1 (MQ=255)

                                                                                                                                           aGCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAAc     >  1:2123882/1‑150 (MQ=255)

                                                                                                                                            gCTCTGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCCCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACaa   <  1:284041/151‑1 (MQ=255)

                                                                                                                                               ctGCAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACaaa  <  2:2084150/149‑1 (MQ=255)

GAACGCTGATCTGGTGAACGACCGTACCTGGGATACTTCCAAGTCTAACTACGGTTACGGTATTGTTGCTATGAACTCTGATGGTCACCTGACTATCAACGGTAACGGCGACGTAGACAACGGTACTGAACTGGATAACAGCTCTGTAGACAATGTTGTTGCTGCAACCGGTAACTACAAAGTTCGTATCGACAACGCAACTGGCGCTGGCGCTATCGCTGATTACAAAGATAAAGAAATTATCTACGTAAACGACGTCAACAGCAACGCGACCTTCTCTGCTGCTAACAAA  >  NC_000913/393152‑393443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`