Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 459,446 T→C S187P (TCC→CCC)  lon → DNA‑binding ATP‑dependent protease La

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913459,4460TC100.0% 454.0 / NA 119S187P (TCC→CCC) lonDNA‑binding ATP‑dependent protease La
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (67/52);  total (67/52)

Only 100 of 120 total aligned reads displayed.

GTTCGAAGGCTACATCAAGCTGAACAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGTCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTACTATCTGAACGAGCAAATGAAAG  >  NC_000913/459298‑459593
                                                                                                                                                    |                                                                                                                                                   
  tCGAAGGCTACATCAAGCTGAACAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCg                                                                                                                                                  >  1:1688397/1‑150 (MQ=255)
   cGAAGGCTACATCAAGCTGAACAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGa                                                                                                                                                 <  2:1916314/150‑1 (MQ=255)
   cGAAGGCTACATCAAGCTGAACAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGa                                                                                                                                                 <  1:1724393/150‑1 (MQ=255)
     aaGGCTACATCAAGCTGAACAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGt                                                                                                                                              >  2:1176894/1‑151 (MQ=255)
           aCATCAAGCTGAACAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTaacga                                                                                                                                        <  1:952017/151‑1 (MQ=255)
           aCATCAAGCTGAACAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTaac                                                                                                                                          <  1:1047121/149‑1 (MQ=255)
            cATCAAGCTGAACAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTaacgaa                                                                                                                                       <  1:1466241/151‑1 (MQ=255)
              tCAAGCTGAACAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTaacgaacg                                                                                                                                     >  1:1717708/1‑151 (MQ=255)
               cAAGCTGAACAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTaacgaacg                                                                                                                                     <  1:849517/150‑1 (MQ=255)
               cAAGCTGAACAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGt                                                                                                                                    >  1:2106573/1‑151 (MQ=255)
               cAAGCTGAACAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGt                                                                                                                                    >  1:1469025/1‑151 (MQ=255)
                 aGCTGAACAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCt                                                                                                                                  <  2:1532336/151‑1 (MQ=255)
                   cTGAACAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTgg                                                                                                                                >  2:1844110/1‑151 (MQ=255)
                   cTGAACAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTgg                                                                                                                                >  1:83457/1‑151 (MQ=255)
                      aaCAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAat                                                                                                                             <  1:1643676/151‑1 (MQ=255)
                      aaCAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAat                                                                                                                             <  2:568550/151‑1 (MQ=255)
                       aCAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAata                                                                                                                            <  2:312568/151‑1 (MQ=255)
                         aaaaaaaTCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATc                                                                                                                          >  2:1397920/1‑151 (MQ=255)
                          aaaaaaTCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCt                                                                                                                         >  1:992369/1‑151 (MQ=255)
                          aaaaaaTCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCt                                                                                                                         >  2:618508/1‑151 (MQ=255)
                           aaaaaTCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTg                                                                                                                        >  1:1977807/1‑151 (MQ=255)
                            aaaaTCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTg                                                                                                                        >  1:855136/1‑150 (MQ=255)
                               aTCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATgg                                                                                                                    <  2:1914851/151‑1 (MQ=255)
                                  ccaccaGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCaa                                                                                                                 <  2:647476/151‑1 (MQ=255)
                                    accaGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAatg                                                                                                               >  1:688396/1‑151 (MQ=255)
                                          aGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGaa                                                                                                         <  1:1034993/151‑1 (MQ=255)
                                            tGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATc                                                                                                       >  2:1993938/1‑151 (MQ=255)
                                             gCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATc                                                                                                       <  2:867714/150‑1 (MQ=255)
                                             gCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCg                                                                                                      >  1:2136083/1‑151 (MQ=255)
                                               tGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCgg                                                                                                     >  1:510114/1‑150 (MQ=255)
                                                gACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGaa                                                                                                   <  1:544044/151‑1 (MQ=255)
                                                gACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGa                                                                                                    >  2:869864/1‑150 (MQ=255)
                                                   gTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATc                                                                                                >  2:551671/1‑151 (MQ=255)
                                                   gTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATc                                                                                                <  1:469295/151‑1 (MQ=255)
                                                     cGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGa                                                                                              <  2:1159748/151‑1 (MQ=255)
                                                        tGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATct                                                                                           >  2:1113164/1‑151 (MQ=255)
                                                         gAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATctg                                                                                          <  2:1921781/151‑1 (MQ=255)
                                                           aTAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATctgct                                                                                        <  1:400281/151‑1 (MQ=255)
                                                               cATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCtgctgc                                                                                      >  2:1671293/1‑149 (MQ=255)
                                                                aTCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAgg                                                                                   >  1:118146/1‑151 (MQ=255)
                                                                aTCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAgg                                                                                   <  1:1443638/151‑1 (MQ=255)
                                                                  cgacgaTCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACGGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGtt                                                                                 <  1:2111276/151‑1 (MQ=255)
                                                                  cgacgaTCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGtt                                                                                 >  1:162335/1‑151 (MQ=255)
                                                                  cgacgaTCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCT‑GAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTg                                                                                >  2:1769972/1‑151 (MQ=255)
                                                                    acgaTCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTga                                                                               <  1:1898037/151‑1 (MQ=255)
                                                                     cgaTCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTg                                                                                >  1:2049327/1‑149 (MQ=255)
                                                                      gaTCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTgaga                                                                             <  2:193456/151‑1 (MQ=255)
                                                                      gaTCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTgaga                                                                             <  1:1019955/151‑1 (MQ=255)
                                                                         ccGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAAc                                                                          <  1:178566/151‑1 (MQ=255)
                                                                         ccGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAAc                                                                          >  1:789519/1‑151 (MQ=255)
                                                                          cGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACg                                                                         >  2:1012038/1‑151 (MQ=255)
                                                                             cgcgTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCAt                                                                      >  2:2075044/1‑151 (MQ=255)
                                                                              gcgTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCAtt                                                                     <  2:1247110/151‑1 (MQ=255)
                                                                               cgTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTc                                                                    >  2:740818/1‑151 (MQ=255)
                                                                               cgTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTc                                                                    >  1:585924/1‑151 (MQ=255)
                                                                                     gCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAAcc                                                              >  1:1314998/1‑151 (MQ=255)
                                                                                     gCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAAcc                                                              >  2:556795/1‑151 (MQ=255)
                                                                                       ggATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACcgc                                                            >  2:1608854/1‑151 (MQ=255)
                                                                                           aCCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTa                                                        <  2:162334/151‑1 (MQ=255)
                                                                                            ccATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTa                                                        >  1:1431147/1‑150 (MQ=255)
                                                                                             cATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTaa                                                       >  2:2123279/1‑150 (MQ=255)
                                                                                                 gctgcACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAg                                                   <  1:1349542/150‑1 (MQ=255)
                                                                                                 gctgcACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGc                                                  >  2:1785126/1‑151 (MQ=255)
                                                                                                  ctgcACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGc                                                  >  1:43722/1‑150 (MQ=255)
                                                                                                   tgcACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGc                                                  >  1:1516275/1‑149 (MQ=255)
                                                                                                    gcACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAg                                                <  2:648629/150‑1 (MQ=255)
                                                                                                     cacaTATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGAt                                              <  1:1701093/151‑1 (MQ=255)
                                                                                                        atatGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATgg                                            >  1:1609041/1‑150 (MQ=255)
                                                                                                             ccGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAAt                                      >  1:185253/1‑151 (MQ=255)
                                                                                                             ccGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAAt                                      >  1:1809451/1‑151 (MQ=255)
                                                                                                               gCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATcc                                    <  2:440373/151‑1 (MQ=255)
                                                                                                               gCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATcc                                    >  1:875689/1‑151 (MQ=255)
                                                                                                                   aaaCTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGc                                >  2:316260/1‑151 (MQ=255)
                                                                                                                    aaCTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCg                               >  1:1098427/1‑151 (MQ=255)
                                                                                                                     aCTGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGt                              <  1:1953106/151‑1 (MQ=255)
                                                                                                                       tGGCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTg                             >  2:1284973/1‑150 (MQ=255)
                                                                                                                        ggCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGa                            <  1:122457/150‑1 (MQ=255)
                                                                                                                         gCTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGt                          <  2:450327/151‑1 (MQ=255)
                                                                                                                          cTGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGt                          >  1:670504/1‑150 (MQ=255)
                                                                                                                           tGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTAc                        >  2:745360/1‑151 (MQ=255)
                                                                                                                           tGACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTAc                        >  1:1682781/1‑151 (MQ=255)
                                                                                                                            gACAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTa                         <  1:1068836/149‑1 (MQ=255)
                                                                                                                             aCAAACAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTACTa                      <  1:1657671/151‑1 (MQ=255)
                                                                                                                               aaaCAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTACTATc                    >  1:153084/1‑151 (MQ=255)
                                                                                                                                aaCAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTACTATCt                   >  1:470963/1‑151 (MQ=255)
                                                                                                                                aaCAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTACTATCt                   >  1:229340/1‑151 (MQ=255)
                                                                                                                                 aCAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTACTATCTg                  >  1:2027656/1‑151 (MQ=255)
                                                                                                                                 aCAGTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTACTATCTg                  <  1:2075632/151‑1 (MQ=255)
                                                                                                                                    gTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTACTATCTGAAc               >  2:1915394/1‑151 (MQ=255)
                                                                                                                                    gTCTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTACTATCTGAAc               >  1:480424/1‑151 (MQ=255)
                                                                                                                                      cTGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTACTATCTGAACg              >  2:1309655/1‑150 (MQ=255)
                                                                                                                                       tGTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTACTATCTGAACg              >  1:543078/1‑149 (MQ=255)
                                                                                                                                        gTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTACTATCTGAACg              <  1:1990220/148‑1 (MQ=255)
                                                                                                                                        gTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTACTATCTGAACGAGc           >  1:1760575/1‑151 (MQ=255)
                                                                                                                                        gTTCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGGGAGTACTATCTGAACGa             <  1:1304895/149‑1 (MQ=255)
                                                                                                                                         ttCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTACTATCTGAACGAGc           >  2:1137649/1‑150 (MQ=255)
                                                                                                                                         ttCTGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTACTATCTGAACGAGc           >  1:1645915/1‑150 (MQ=255)
                                                                                                                                            tGGAGATGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTACTATCTGAACGAGCAAAt       >  2:1410090/1‑151 (MQ=255)
                                                                                                                                               agaTGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTACTATCTGAACGAGCAAATGaa    <  2:909312/151‑1 (MQ=255)
                                                                                                                                                gaTGCCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTACTATCTGAACGAGCAAATGaa    <  2:2136038/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
GTTCGAAGGCTACATCAAGCTGAACAAAAAAATCCCACCAGAAGTGCTGACGTCGCTGAATAGCATCGACGATCCGGCGCGTCTGGCGGATACCATTGCTGCACATATGCCGCTGAAACTGGCTGACAAACAGTCTGTTCTGGAGATGTCCGACGTTAACGAACGTCTGGAATATCTGATGGCAATGATGGAATCGGAAATCGATCTGCTGCAGGTTGAGAAACGCATTCGCAACCGCGTTAAAAAGCAGATGGAGAAATCCCAGCGTGAGTACTATCTGAACGAGCAAATGAAAG  >  NC_000913/459298‑459593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑