Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_000913 2,018,716 (CGGTGGCTG)1→2 coding (331/1128 nt) fliK → flagellar hook‑length control protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 20187013 (0.030)76 (0.760)
+TGGCTGCGG
68/250 0.4 96.2% coding (316/1128 nt) fliK flagellar hook‑length control protein
?NC_000913 2018702 = 3 (0.030)coding (317/1128 nt) fliK flagellar hook‑length control protein

AGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAACGACGAACAATCCACATCAACACCGTTAACCACCGCTCAGACGATGGCGT‑‑‑‑‑‑‑‑‑TGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGACAATACGCCCAAAGTGACTGATGCGCCGTCAACCGTGTTACC  >  NC_000913/2018565‑2018852
                                                                                                                                                  |                                                                                                                                                      
aggcgagccgctgatcagcgatattgtttccgacgcgcaacaagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggtggct                                                                                                                                                    >  2:1069795‑M2/147‑151 (MQ=255)
 ggcgagccgctgatcagcgatattgtttccggcgcgcaacaagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggtggctg                                                                                                                                                   <  2:219669‑M2/6‑1 (MQ=255)
 ggcgagccgctgatcagcgatattgtttccgacgcgcaacaagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggtggctg                                                                                                                                                   >  2:482870‑M2/146‑151 (MQ=255)
   cgagccgctgatcagcgatattgtttccgacgcgcaacaagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggtggctgcg                                                                                                                                                 >  3:869415‑M2/144‑151 (MQ=255)
    gagccgctgatcagcgatattgtttccgacgcgcaacaagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggtggctgc                                                                                                                                                  <  3:200045‑M2/7‑1 (MQ=255)
      gccgctgatcagcgatattgtttccgacgcgcaacaagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggtggctgcggtg                                                                                                                                              >  2:252940‑M2/141‑151 (MQ=255)
       ccgctgatcagcgatattgtttccgacgcgcaacaagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggtggctgcggtg                                                                                                                                              <  3:1204967‑M2/11‑1 (MQ=255)
         gctgatcagcgatattgtttccgacgcgcaacaagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggtggctgcggtggct                                                                                                                                           <  2:356911‑M2/14‑1 (MQ=255)
           tGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAACGACGAACAATCCACATCAACACCGTTAACCACCGCTCAGACGATGGCGT‑‑‑‑‑‑‑‑‑TGGCTGCGGTGGCTGACAAAAATAc                                                                                                                                >  2:742686/1‑151 (MQ=255)
                agcgatattgtttccgacgcgcaacaagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACaaa                                                                                                                                     >  2:1420504‑M2/131‑150 (MQ=255)
                   gatattgtttccgacgcgcaacaagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAAt                                                                                                                                  <  2:922713‑M2/23‑1 (MQ=255)
                       ttgtttccgacgcgcaacaagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGAc                                                                                                                             >  2:820540‑M2/124‑151 (MQ=255)
                        tgttaccgacgcgcaacaagctaattcactgagccctgtggatgaaacaccgcctgtcatcaacggcgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTAACAAAAATACg                                                                                                                               <  3:499972‑M2/26‑1 (MQ=255)
                         gtttccgacgcgcaacaagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACa                                                                                                                            >  3:766276‑M2/122‑150 (MQ=255)
                         gtttccgacgcgcaacaagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACa                                                                                                                            <  2:583991‑M2/29‑1 (MQ=255)
                          tttccgacgcgcaacaagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACaa                                                                                                                           <  3:522495‑M2/30‑1 (MQ=255)
                          tttccgacgcgcaacaagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACaa                                                                                                                           <  3:715604‑M2/30‑1 (MQ=255)
                           ttccgacgcgcaacaagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACaaa                                                                                                                          >  2:1315995‑M2/120‑150 (MQ=255)
                             ccgacgcgcaacaagctaatttacggatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGa                                                                                                                       <  3:1612017‑M2/34‑1 (MQ=255)
                               gacgcgcaataagttattttacggacccctttgaatgaaaccccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGa                                                                                                                       <  3:1169504‑M2/34‑1 (MQ=255)
                                acgcgcaacaagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACg                                                                                                                     >  2:265099‑M2/115‑150 (MQ=255)
                                     caacaagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGaaaaa                                                                                                                <  3:1107952‑M2/41‑1 (MQ=255)
                                      aacaagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAg                                                                                                               >  3:1500130‑M2/109‑150 (MQ=255)
                                      aacaagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGc                                                                                                              <  3:133147‑M2/43‑1 (MQ=255)
                                         aagctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGga                                                                                                           <  2:49505‑M2/46‑1 (MQ=255)
                                          agctaatttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGgat                                                                                                          >  2:1025177‑M2/105‑151 (MQ=255)
                                                tttactgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCtg                                                                                                    >  3:1134303‑M2/99‑151 (MQ=255)
                                                  tactgatccctgtggatgaaccaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCtg                                                                                                    <  3:220462‑M2/53‑1 (MQ=255)
                                                   actgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCtgaat                                                                                                 <  3:987073‑M2/56‑1 (MQ=255)
                                                     tgatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCtgaatg                                                                                                >  2:1571775‑M2/94‑150 (MQ=255)
                                                      gatccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCtgaatga                                                                                               <  2:456153‑M2/58‑1 (MQ=255)
                                                      gatccctggggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCtgaatg                                                                                                >  3:1242095‑M2/93‑149 (MQ=255)
                                                      gatcccggtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCtgaatg                                                                                                <  3:480621‑M2/57‑1 (MQ=255)
                                                       atccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCtgaatga                                                                                               >  3:227856‑M2/92‑149 (MQ=255)
                                                         ccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGa                                                                                            <  2:387640‑M2/61‑1 (MQ=255)
                                                         ccctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGAc                                                                                           <  3:1600561‑M2/62‑1 (MQ=255)
                                                          cctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACg                                                                                          <  2:1102875‑M2/63‑1 (MQ=255)
                                                          cctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACg                                                                                          <  2:940174‑M2/63‑1 (MQ=255)
                                                           ctgtggatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGATGAAAAAGCGGATGATCTGAATGAAGACGt                                                                                         >  3:481672‑M2/88‑151 (MQ=255)
                                                                gatgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCg                                                                                    >  2:385746‑M2/83‑151 (MQ=255)
                                                                 atgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGc                                                                                   >  2:744578‑M2/82‑151 (MQ=255)
                                                                 aTGAAACACCGCCTGTCATCAACGACGAACAATCCACATCAACACCGTTAACCACCGCTCAGACGATGGCGT‑‑‑‑‑‑‑‑‑TGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTg                                                                            >  2:1382140/1‑149 (MQ=255)
                                                                  tgaaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGc                                                                                   >  3:174883‑M2/81‑150 (MQ=255)
                                                                    aaacaccgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCa                                                                                  >  2:1324695‑M2/79‑149 (MQ=255)
                                                                     aatacCGCCTCTCAACAACGACTATCAATCCGCGTCATCGCCGTTAACCACCGCTCAGACGATTGCGTTGCCTGCGGTGGCTGCGGTGGCTGACAAAAATACGTCAAAAGACGAAAAAGCGGATGATCTGAATGAAGACTTTTCCGCAAg                                                                                <  3:652326/147‑1 (MQ=255)
                                                                          cgcctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAg                                                                          <  2:492387‑M2/79‑1 (MQ=255)
                                                                            cctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAgcg                                                                        >  3:1140426‑M2/71‑151 (MQ=255)
                                                                            cctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAgcg                                                                        >  3:1310724‑M2/71‑151 (MQ=255)
                                                                             ctgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAgcgc                                                                       >  2:718453‑M2/70‑151 (MQ=255)
                                                                              tgtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGATGACGTCACCGCAAGCCTGAGCGcc                                                                      >  3:924521‑M2/69‑151 (MQ=255)
                                                                               gtcatcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGcc                                                                      <  2:1141486‑M2/83‑1 (MQ=255)
                                                                                 catcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCtt                                                                   >  2:324638‑M2/66‑151 (MQ=255)
                                                                                 catcaacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCtt                                                                   <  3:1420366‑M2/86‑1 (MQ=255)
                                                                                    caacgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCttttt                                                                <  3:153741‑M2/89‑1 (MQ=255)
                                                                                      acgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGc                                                              <  1:8159‑M2/91‑1 (MQ=255)
                                                                                       cgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATTCGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCg                                                             <  3:515732‑M2/92‑1 (MQ=255)
                                                                                       cgacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCg                                                             >  2:1516175‑M2/60‑151 (MQ=255)
                                                                                        gacgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGa                                                            <  3:970059‑M2/93‑1 (MQ=255)
                                                                                          cgaacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGata                                                          <  3:792101‑M2/95‑2 (MQ=255)
                                                                                            aacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGtt                                                        <  3:627291‑M2/97‑1 (MQ=255)
                                                                                            aacaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGtt                                                        >  3:1092985‑M2/55‑151 (MQ=255)
                                                                                             acaatccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACTGCAAGCCTGAGCGCCCTTTTTGCGATGTTg                                                       <  3:1477109‑M2/98‑1 (MQ=255)
                                                                                                atccacatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCg                                                    >  2:612266‑M2/51‑151 (MQ=255)
                                                                                                    acatcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGtt                                                >  2:383240‑M2/47‑151 (MQ=255)
                                                                                                     catcaacaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGttt                                               >  2:593682‑M2/46‑151 (MQ=255)
                                                                                                          acaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGAc                                           >  2:1183202‑M2/41‑150 (MQ=255)
                                                                                                          acaccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGACa                                          <  3:1117606‑M2/111‑1 (MQ=255)
                                                                                                           caccgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGACa                                          >  3:383770‑M2/40‑150 (MQ=255)
                                                                                                              cgttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGACAATAc                                      >  2:970154‑M2/37‑151 (MQ=255)
                                                                                                                ttaaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGACAATACGcc                                   >  2:1289552‑M2/35‑151 (MQ=255)
                                                                                                                  aaccaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGACAATACGccc                                  >  2:785267‑M2/33‑151 (MQ=255)
                                                                                                                   accaccgctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGACAATACGccc                                  >  2:848533‑M2/32‑150 (MQ=255)
                                                                                                                         gctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGACAATACGCCCAAAGTg                            >  3:1112504‑M2/26‑150 (MQ=255)
                                                                                                                         gctcagacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGACAATACGCCCAAAGTg                            >  3:677549‑M2/26‑150 (MQ=255)
                                                                                                                              gacgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGACAATACGCCCAAAGTGACTGAt                      >  2:1188027‑M2/21‑151 (MQ=255)
                                                                                                                                cgatggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGACAATACGCCCAAAGTGACTGATgc                    >  3:893192‑M2/19‑151 (MQ=255)
                                                                                                                                  atggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGACAATACGCCCAAAGTGACTGATgcgc                  >  3:1282914‑M2/17‑151 (MQ=255)
                                                                                                                                    ggcgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGACAATACGCCCAAAGTGACTGATGCGCCg                >  2:492600‑M2/15‑151 (MQ=255)
                                                                                                                                      cgttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGACAATACGCCCAAAGTGACTGATGCGCCGTc              >  3:295931‑M2/13‑151 (MQ=255)
                                                                                                                                       gttggctgcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGACAATACGCCCAAAGTGACTGATGCGCCGTCa             <  3:667280‑M2/140‑1 (MQ=255)
                                                                                                                                              gcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGACAATACGCCCAAAGTGACTGATGCGCCGTCAACCgtgt      <  3:55879‑M2/147‑1 (MQ=255)
                                                                                                                                              gcggTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGACAATACGCCCAAAGTGACTGATGCGCCGTCAACCgt        <  3:847053‑M2/145‑1 (MQ=255)
                                                                                                                                                 gTGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGACAATACGCCCAAAGTGACTGATGCGCCGTCAACCGTGTTAc   >  2:1624783‑M2/2‑151 (MQ=255)
                                                                                                                                                  tGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGACAATACGCCCAAAGTGACTGATGCGCCGTCAACCGTGTTAcc  >  3:1044017/1‑151 (MQ=255)
                                                                                                                                                  |                                                                                                                                                      
AGGCGAGCCGCTGATCAGCGATATTGTTTCCGACGCGCAACAAGCTAATTTACTGATCCCTGTGGATGAAACACCGCCTGTCATCAACGACGAACAATCCACATCAACACCGTTAACCACCGCTCAGACGATGGCGT‑‑‑‑‑‑‑‑‑TGGCTGCGGTGGCTGACAAAAATACGACAAAAGACGAAAAAGCGGATGATCTGAATGAAGACGTCACCGCAAGCCTGAGCGCCCTTTTTGCGATGTTGCCGGGTTTTGACAATACGCCCAAAGTGACTGATGCGCCGTCAACCGTGTTACC  >  NC_000913/2018565‑2018852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.