| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 599,576 | 0 | T | G | 44.7% | 139.1 / 35.5 | 85 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| Reads supporting (aligned to +/- strand): ref base T (4/43); new base G (38/0); total (42/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.37e-20 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACA > NC_000913/599428‑599722 | aCGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGggtgg < 2:54786/151‑1 (MQ=255) cGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGgggggg > 2:920460/1‑150 (MQ=255) cTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGgggggggg > 2:1388524/1‑148 (MQ=255) cgacgaCTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGa < 2:340256/149‑1 (MQ=255) cgacTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGGGGTcc > 3:723238/1‑149 (MQ=255) gacTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGGGATcc > 2:1470362/1‑148 (MQ=255) tttAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCTGCg > 2:1055946/1‑149 (MQ=255) ttAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGGGGTCCCGCGATc > 2:518402/1‑151 (MQ=255) tAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGgggggggggaccttcgggcc > 3:718499/1‑137 (MQ=255) aaTCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATcc < 2:1457527/150‑1 (MQ=255) aaTCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑g < 3:26950/151‑1 (MQ=255) aTCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGTGATCCTTCGATcccg > 2:657780/1‑149 (MQ=255) cacaTCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTCCTGc > 2:543244/1‑142 (MQ=255) acaTCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTccctccatcc > 3:122299/1‑138 (MQ=255) aTCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCaaaa < 2:1159119/151‑1 (MQ=255) gTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACg < 2:415127/151‑1 (MQ=255) gTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCTGCGATCC‑GGCaaaaa > 2:647622/1‑149 (MQ=255) tttAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCTGCGGTCC‑GGCaaaaa > 2:170752/1‑147 (MQ=255) tAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGccc < 2:1267838/150‑1 (MQ=255) aaaaGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCg < 2:1014828/150‑1 (MQ=255) aaaaGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTCCTGCGATCC‑GGCAAAAAAGccc > 3:211646/1‑149 (MQ=255) aaaGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTTCCCCGATCC‑GGCAAAAAACCCCg > 2:1447479/1‑149 (MQ=255) aaaGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCTGCGATCC‑GGCAAAAAAGccc > 2:570156/1‑148 (MQ=255) ccAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGGCCTGCGGTCC‑GGCCAAAACAcccccgaa > 3:1583949/1‑144 (MQ=255) cAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGGGGTCCTGCGATCC‑CGCGAAAAAGCCCCCGAAGTg > 3:194217/1‑151 (MQ=255) cAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTg < 3:678664/151‑1 (MQ=255) cAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTg < 2:471034/151‑1 (MQ=255) gTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGAt < 3:344825/151‑1 (MQ=255) aTGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGAGCCTGCGATCC‑GGCCAAAAAGCCCGAGAAGTGGTcgccgc > 3:809468/1‑151 (MQ=255) tGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTCCTGCGATCC‑GGCAAAAAAGCCCGCGAAGGGATCgccgcc > 2:996127/1‑151 (MQ=255) ggCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGccgccg < 3:882363/151‑1 (MQ=255) cGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGTGGGCTTGGCATCC‑GGCAAAAACGCCCGAGGAGAGGTGCccgccggg > 3:574890/1‑149 (MQ=255) gCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGGGGGGGGGGGATCCCGCGGTCC‑CGCAAAAACGCCCGCGGAGGGAGCgccgcc > 3:207350/1‑145 (MQ=255) gCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGaa < 3:802296/150‑1 (MQ=255) ccGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGa < 3:1403250/151‑1 (MQ=255) gTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑Ca < 3:212591/151‑1 (MQ=255) gTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑Ca < 3:705566/151‑1 (MQ=255) tttATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGTGAAGTGGCGGGCGGGGTGGGGATCCTGCGATCC‑CGCAAAAACGCCCGAGGAGGGATCGCCGCCGGGAAgg > 2:893019/1‑147 (MQ=255) ttATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTCCTGCGATCC‑GGCAAAAAAGCCCGAGGAGTGATCGCCGGCGTGAAGGa > 3:1401774/1‑147 (MQ=255) tATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑Caaa < 2:783787/150‑1 (MQ=255) gcgcGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACt < 2:1306398/147‑1 (MQ=255) gcgcGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACt < 3:176960/147‑1 (MQ=255) gcgcGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTg < 3:189528/148‑1 (MQ=255) gcgcGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGa < 2:1289486/150‑1 (MQ=255) tGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCt < 2:983711/150‑1 (MQ=255) gTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGa < 2:572542/151‑1 (MQ=255) gTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTCCTGCGATCC‑CGCACAAAAGCCCGCGGAGTGAGCGCCGCCGCGAAGGA‑CAAAATGGaaaaactg > 3:13115/1‑145 (MQ=255) gCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGaaaa < 2:590181/151‑1 (MQ=255) cGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAag < 3:108941/151‑1 (MQ=255) aaGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAagta < 2:938920/151‑1 (MQ=255) aaGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAagta < 2:1360021/151‑1 (MQ=255) aaGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGGCCTGCGATCCGGGCAAAAACCCCCG‑GGAGGGATCGCCGCCGGGGAGGA‑GAAAAAGGGAAAGCTgggaa > 3:47534/1‑144 (MQ=255) ggTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAagtagt < 3:334889/151‑1 (MQ=255) ggTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGGGAAGGA‑CAAACTGGAAACGCTGAAAagtag > 2:744509/1‑150 (MQ=255) gTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGTCCTGCGCTCC‑GGCAAAAACGCCCGAGAAGGGATCGCCGCCGTGAAGGA‑CAAACCGGAAACGCTGaaa > 3:367148/1‑144 (MQ=255) cAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCTGCGATCC‑GGCCAAAACGCCCGAGCAGTGGTCGCCGCCGGGAAGGA‑CAAACTGGAAACGCTGaaaa > 2:1339543/1‑142 (MQ=255) cAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGc > 2:849394/1‑151 (MQ=255) gATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCg < 3:833518/151‑1 (MQ=255) aTTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGTGGGCCCGGGAACC‑GGGCAAAAAACCCGGGAAGGGAACGCCGCCGGGGAGGAGCAAAGGGGAAA‑GCTGAAAaggagtgagcccg > 3:843877/1‑144 (MQ=255) ttGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCgg < 2:631966/150‑1 (MQ=255) ggCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAg < 2:1429140/151‑1 (MQ=255) gCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAgg < 2:618219/151‑1 (MQ=255) cccGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGc < 3:931356/151‑1 (MQ=255) cGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGt < 3:191741/151‑1 (MQ=255) cGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCAGCGGACC‑GGCAAAAACGCCCGCGAAGTGATCGCCGCCCGGTAGGA‑GAAAATGGAAAAGCCGGAAAGAAAACTTCCGGCAGGCgg > 2:508858/1‑150 (MQ=255) ggAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTg < 3:474411/151‑1 (MQ=255) cgcCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGGGCCTGCGATCC‑GGCAAAAACGCCCCAGAAGGGATCGGCGCCGGGGAGGA‑CAAAATGGAAAAGCTGGAAAATAGGCTGCCGGAAGGCgggg > 3:958076/1‑145 (MQ=255) ccGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGtt < 3:958916/151‑1 (MQ=255) ccGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCGGGAGGCGGGGAGATAGtt > 2:1306773/1‑151 (MQ=255) cGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAAAGCTGGAAAGAAGTCTGCCGGAAGGCGGGGGGATAGtt > 2:780628/1‑150 (MQ=255) gCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGAGCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGGAGTCTGCCGGAAGGCGTGGAGATAGTTacaa < 3:1137789/150‑1 (MQ=255) gCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGTGATCCTGCGGTCC‑GGCAAAAAAGCCCGAGAAGGGATCGCCGCCGGGGAGGA‑CAAACTGGGAAAGGTGAAAAGTAGTCTGCCGGGAGGGGGGGGGATAGTTaaaa > 3:685053/1‑150 (MQ=255) cATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTacaa > 2:1615522/1‑149 (MQ=255) tGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGGGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAAGA‑CAAACTGGAAACGCTGAAAAGGAGTCTGCCGGGAGGCGGGGAGATAGGTACAACATa > 2:1219587/1‑150 (MQ=255) gCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGGAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGGAGTCTGCCGGGAGGCGGGGAGATAGTTACAACATa > 2:678266/1‑149 (MQ=255) cGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGGGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAAATGGAAACGCTGAAAAGGAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATAc > 2:1560902/1‑148 (MQ=255) aCTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGc < 3:1246885/151‑1 (MQ=255) aaCGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGcagcc < 2:279178/151‑1 (MQ=255) cgaaggcgaagTGGCGGGCGGGGGGGGGATCCTGCGATCC‑GGCAAAAAAGCCCGAGAAGGGATCGCCGCCGTGAAGGA‑CAAAATGGAAACGCTGAAAAGTAGTCTGCCGGGAGGCGTGGGGATAGTTAAAACAAACGATCGCAGCCAGCTc > 3:826961/1‑151 (MQ=255) gaaggcgaagTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCa < 3:1287437/151‑1 (MQ=255) gaaggcgaagTGGCGGGCGGGGGGGGGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGGAAAGGAGTCTGCCGGAAGGCGTGGGGATAGTTACAACATACGATCGCAGCCAGCTc > 2:790717/1‑150 (MQ=255) gcgaagTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGa < 2:17750/151‑1 (MQ=255) aagTGGCGGGCGGGGGGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGGGATCGCCGCCGTGAAGGA‑CAAACTGGAAAAGCTGAAAAGTAGTCTGCCGGAAGGCGGGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGAcc > 3:1308386/1‑150 (MQ=255) gTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACcgcg < 3:1304492/151‑1 (MQ=255) gTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACcgc < 3:1239026/150‑1 (MQ=255) ggcgggcgGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGGGAAGGA‑CAAACGGGAAACGCTGAAAGGAAGTCTGCCGGAAGGCGTGGGGATAGTTACAACATCCGATCGCAGCCAGCTCATTGCCCGCGcc > 1:9225/1‑151 (MQ=255) gggcgggGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATc > 3:1221686/1‑151 (MQ=255) ggggTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGAc > 3:1194807/1‑150 (MQ=255) ggggTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACa < 2:1513931/151‑1 (MQ=255) | ACGCTCGACGACTTTAATCACATCGTTTTAAAAGCCAGTGAAAATGGCGTGCCCGTTTATCTGCGCGATGTTGCGAAGGTCCAGATTGGCCCGGAGATGCGCCGGGGCATTGCCGAACTAAACGGCGAAGGCGAAGTGGCGGGCGGGGTGGTGATCCTGCGATCC‑GGCAAAAACGCCCGAGAAGTGATCGCCGCCGTGAAGGA‑CAAACTGGAAACGCTGAAAAGTAGTCTGCCGGAAGGCGTGGAGATAGTTACAACATACGATCGCAGCCAGCTCATTGACCGCGCCATCGACA > NC_000913/599428‑599722 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |