Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913345,3280CA46.1% 142.3 / 58.3 102intergenic (+337/‑76)yahL/yahMuncharacterized protein/uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base C (50/5);  new base A (0/47);  total (50/52)
Fisher's exact test for biased strand distribution p-value = 8.94e-24
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 102 total aligned reads displayed.

AAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTG  >  NC_000913/345179‑345475
                                                                                                                                                        |                                                                                                                                                    
aaaaaaTGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCa                                                                                                                                                     <  2:321770/151‑1 (MQ=255)
 aaaaaTGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCa                                                                                                                                                     >  3:1646248/1‑150 (MQ=255)
  aaaaTGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCaaa                                                                                                                                                   <  2:577064/151‑1 (MQ=255)
  aaaaTGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCaa                                                                                                                                                    >  2:367949/1‑150 (MQ=255)
    aaTGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCaaaaa                                                                                                                                                 <  3:106162/151‑1 (MQ=255)
      tGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑cc                                                                                                                                              >  2:1051349/1‑151 (MQ=255)
      tGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑cc                                                                                                                                              >  3:1338595/1‑151 (MQ=255)
          ctcATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGcc                                                                                                                                           >  3:769812/1‑150 (MQ=255)
           tcATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCAt                                                                                                                                         >  3:1515629/1‑151 (MQ=255)
            cATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCAtt                                                                                                                                        >  3:75111/1‑151 (MQ=255)
               gCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGc                                                                                                                                     >  3:809207/1‑151 (MQ=255)
                cAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGc                                                                                                                                     >  3:1560711/1‑150 (MQ=255)
                    tGTTTTGTGAATGTTTTGTTTGACATTCATATAAAAAAAATCATAATCCCATCT‑TGTTTGTGGGGGG‑TTTTTTCTGTATCTTCCGCACCGCACTAAAGCCTGACAAAAAATATGCTGTAAGG‑CTCATATAAAAAA‑CCGCCATTAGCt                                                                                                                                    <  2:1108603/147‑1 (MQ=255)
                      ttttGTGAATGTGTTGTTTGACATTCATATAAAAAAATTCATAATCCCATCA‑TGTTTGTGTGGGT‑TTTTTTCTGTATCTTACGCATCCCACTCAAGCCTGACAAAAAATAGGATTAAAGG‑CTAATATAAAAAA‑CCGCCATTAGCtcatca                                                                                                                               <  3:1236722/150‑1 (MQ=255)
                       tttGTGAATGTTTTGGTTGACATTCATAGGAAAAAAATCATAATCCCATCA‑TTTTTGTGGGGGT‑TTTTTTCTGTATCTTACGCATCGCACCAAGGCCTGACAAAAAATATGCTGTAGGC‑TTAATATAAAAAA‑CCGCCATTAGCTCATCAg                                                                                                                              <  2:1169995/150‑1 (MQ=255)
                        ttGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAgg                                                                                                                             >  2:962742/1‑150 (MQ=255)
                         tgtgATTGTGTTGTTTGACTTTAATATAAAAAAAATCATAATCCCATCA‑TTTTTGGGTGGGG‑TTTTTTCTGTTTCTTACCAACCGCACCCAACCCTAAAAAAAAATAGGATGTAAGG‑CTCATATAAAAAA‑CCGCCATTAGCTCATCAGGa                                                                                                                            <  3:622582/150‑1 (MQ=255)
                          gtgAATGTGTTGGTTGAAATTCATAAAAAAAAAATTATAATCCCATCA‑TGTTGGTGTGGGT‑TTTTTTCTGTATCTAACGCACCGCCCCCACCCCTGAAAAAAAATAGGCTGTAAGG‑CAAATAAAAAAAA‑CCGCCATTAGCTCATCAGGaa                                                                                                                           <  3:582418/150‑1 (MQ=255)
                          gtaattgtttgggttaACATTCATATAAAAAAAATAAAAATCCCATCA‑TGTTGGTGGGGGT‑TTTTTTCTTTATCTTCCCCACCCCCCCCAAGCCGAACAAAAAATATGCTGAAAGG‑CTAAAATAAAAAT‑CCGCCATTAGCTCATCAGGaa                                                                                                                           <  3:516067/139‑1 (MQ=255)
                            gAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAag                                                                                                                          >  2:493543/1‑149 (MQ=255)
                               tgtttggtttgACTTTAATAAAAAAAAAATCATAACTCCATCT‑TTTTTGTGTGGTT‑TTTTTTTTTTATCTTACCCCCCCCACAAAAGCCAGAAAAAAAATATTCTATAGGG‑CACATATAAAAAC‑CCGCCATTAGCTCATCAGGaa                                                                                                                           <  3:1459407/137‑1 (MQ=255)
                               tgtgTTGTTTGACTTTAATAAAAAAAAAATCAAAATCCCATAA‑TTTTTGTGTGGGT‑TTTTTTTTGTATCTTACGCCCCCCACCCAACCCTGAAAAAAAATATGCTGAAAGG‑CTAATAAAAAAAA‑CCGCCATTAGCTCATCAGGAaga                                                                                                                         <  3:1488909/147‑1 (MQ=255)
                               tgtgTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGc                                                                                                                       >  2:788073/1‑149 (MQ=255)
                               tgtgTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGc                                                                                                                       >  2:1073890/1‑149 (MQ=255)
                                 ttttgtttgACATTCATATAAAAAAAATCATAATCCCATCA‑TGTTTGTGTGGGG‑TTTTTTCTGTTTTTTCCGCATCGCACCCAAGCCTAAAAAAAAATTTGCTGAAGGG‑CTAATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAg                                                                                                                     <  2:1164418/147‑1 (MQ=255)
                                 tgtTGGTTGACATTCATATAAAAAAAATCATAATCCCATCA‑TGTTTGTGTGGGG‑TTTTTTCTGTATCTTACGCATCGCACTAAACCCTGAAAAAAAATATGCTGAAAGG‑CTAATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAga                                                                                                                    <  2:566625/150‑1 (MQ=255)
                                  gttggttgACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAgacg                                                                                                                  >  2:492942/1‑151 (MQ=255)
                                   ttggttgACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAgacg                                                                                                                  >  2:1436769/1‑150 (MQ=255)
                                   ttggttgACATTAATATAAAAAAAATAATAATCCCATCA‑TGTTTGTGGGGGT‑TTTTTTTTTTATCTTACGCACCCCACCAAAGCCTGAAAAAAAATATGCTGAAAGG‑CTAATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAgac                                                                                                                   <  2:1216429/149‑1 (MQ=255)
                                   ttggttgACATTAATAAAAAAAAAATAATAATTCCATCT‑TGTTTGGGGGGGT‑TTTTTTTTTTATCTTACGCACCCCCCCAACGCCTGAAAAAAAATATGCTGAAAGG‑CTCATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAgac                                                                                                                   <  3:913979/149‑1 (MQ=255)
                                   ttggttgAAATAAATATAAAAAAAATATTATTACCATCT‑TGTTGGTGTGGGT‑TCTTTTCTTTATGGTACCCTTCGCACACATGCCTAGAAAAAAATTTTC‑GCAAGGTCTCA‑ATCAAAAATCCGCCATTAGCTCATCAGGAAGAGCAgac                                                                                                                   <  3:878983/149‑1 (MQ=255)
                                     ggttgACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAgacgac                                                                                                                >  2:168979/1‑150 (MQ=255)
                                      gttgACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACa                                                                                                               >  3:1102172/1‑150 (MQ=255)
                                       ttgTCATTCTTAAAAAAAAAAATATACTCCCTCCA‑TGTTTGTGTGGGG‑TCTTTTCTTTATCTTCCCCTTCGCCCGCAAGCCTCACAAAAAATGTGGTATAAGC‑CTAATAACAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAgac                                                                                                                   <  2:1254339/145‑1 (MQ=255)
                                        ttcatattcataaaaaaaaaaaaaaaaTCCATAATTGTTTGTGTGGGG‑TTTTTTCTTTTCTTTACCAATCGCACTCACCCCGGACAGAAAATATGTTTAAAGG‑CTAAAATAAAAAG‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACaa                                                                                                              <  2:1184423/137‑1 (MQ=255)
                                             ttaatatAAAAAAAATAATAATCCCATCT‑TGTTGGTGGGGGT‑TTTTTTTTGTTTTTACCCCACCCCCCACAAGCCAGAAAAAAAATATGCTGAAAGG‑CTAATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCa                                                                                                           <  3:318812/144‑1 (MQ=255)
                                                atatGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGAttgt                                                                                                    >  3:869840/1‑151 (MQ=255)
                                                atatAAAAAAAATCTTAATCCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAAAAAATATGCTGTAAGG‑CTCATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGAt                                                                                                       <  2:315683/148‑1 (MQ=255)
                                                  atGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGAttgttg                                                                                                  >  2:1317518/1‑151 (MQ=255)
                                                     aaaaaaaTCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTAt                                                                                               >  2:1522425/1‑151 (MQ=255)
                                                       aaaaaTCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATgg                                                                                             >  2:48742/1‑151 (MQ=255)
                                                               tAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGt                                                                                     >  3:1413072/1‑151 (MQ=255)
                                                                aaTCCCATCT‑TTTTGGGGGGGGG‑TTTTTTTTTTTTCTTCCGCTCCCCCCTAAAGCCGGAAAAAAAATATGTTGAAAGG‑CTAATAAAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACggg                                                                                       <  3:1236973/148‑1 (MQ=255)
                                                                aaTCCCATCA‑T‑TTTGTGGGGGGTTTTTTTTTTTATTTTACGCACCGCCCTAAACCCTAAAAAAAAATATGCTTAAAGG‑CTCATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGt                                                                                     <  2:832736/150‑1 (MQ=255)
                                                                  ttCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCg                                                                                  >  2:1368051/1‑151 (MQ=255)
                                                                   tCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCg                                                                                  >  3:226736/1‑150 (MQ=255)
                                                                    cccttcttGTTTTGGTGGGT‑TTTTTTCTGTTTCTTCCGCGCCCCACTCAAGCCTAAAAGAAAAGATGATTTAGGC‑CTCAAATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCg                                                                                  <  3:651524/143‑1 (MQ=255)
                                                                    ccATCT‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAAAAAATATGCTGAAAGG‑CTAATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGtt                                                                                    <  2:31146/147‑1 (MQ=255)
                                                                    ccATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCg                                                                                  >  2:892635/1‑149 (MQ=255)
                                                                       tca‑tTTTTGTGGGGGT‑TTTTTTTTTTATCTTACGCACCGCACAAAAGCTGAAAAAAAAATAGGCTGAAAGG‑TTAATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGa                                                                                 <  3:1613900/147‑1 (MQ=255)
                                                                       tca‑tGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGcc                                                                             >  2:596235/1‑151 (MQ=255)
                                                                       tca‑tGTTGGTGTGGGT‑TTTTTTCTGTATCTTCCCCATCGCACCCAACCCTGAAAAAAAATATGCTGTAAGG‑CTAATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAg                                                                                <  3:418039/148‑1 (MQ=255)
                                                                         a‑tGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTc                                                                           >  3:295181/1‑151 (MQ=255)
                                                                           tGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCg                                                                          >  3:529087/1‑151 (MQ=255)
                                                                            gTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCg                                                                          >  3:916086/1‑150 (MQ=255)
                                                                            gTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCg                                                                          >  2:268101/1‑150 (MQ=255)
                                                                                  gtgGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCgg                                                                   >  3:588602/1‑151 (MQ=255)
                                                                                   gggggtttttttctttttctTACGCACCCCCCTCAAGCCTGAAAAAAAATATGCTAAAAGC‑CTCATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCgg                                                                   <  3:909223/143‑1 (MQ=255)
                                                                                    gggg‑TTTTTTCTTTATCTTACGCACCGCCCACAAGCCTGAAAAAAAATATGCTGTAAGG‑CTCATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGt                                                                  <  3:1395898/150‑1 (MQ=255)
                                                                                    gggg‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTc                                                                 >  3:515115/1‑151 (MQ=255)
                                                                                         tCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAAc                                                             >  2:70231/1‑151 (MQ=255)
                                                                                           ttttCTTTATCTTACCCACCCCACTCAACCCTGAAAAAAAATATGCTGAAAGG‑CTAATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAAc                                                             <  2:729848/149‑1 (MQ=255)
                                                                                           ttttCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACtt                                                           >  3:157920/1‑151 (MQ=255)
                                                                                            tttgtttttctcccGCATCGCACACAGGCCTGAAAAAAAATATGTTGAAGGT‑CTAATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACtt                                                           <  3:1461268/137‑1 (MQ=255)
                                                                                             ttCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACtttt                                                         >  2:542887/1‑151 (MQ=255)
                                                                                                tttATCTTACCCATCGCACACAACCTTGACAAAAAATATGTTGAAAGC‑CTCATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCa                                                       <  3:1173339/148‑1 (MQ=255)
                                                                                                tGTTTCTTCCGCATCCCACTCAAGCCTAAAAAAAAATATGCTGTAAGC‑CTAATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTc                                                        <  2:198500/149‑1 (MQ=255)
                                                                                                tGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCa                                                       >  3:1218262/1‑150 (MQ=255)
                                                                                                       tACGCACCGCACTAAAGCCTGAAAAAAAATATGCTGTAAGG‑CTAATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCaaaa                                                    <  2:723639/146‑1 (MQ=255)
                                                                                                         cgcaccgcacTCAAGCCTGAAAAAAAATATGCTGTAAGG‑CTCATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACtctt                                               <  2:111229/149‑1 (MQ=255)
                                                                                                         cGCATCCCACTCAAGCCGGAAAAAAAATATGCTGTAAGG‑CTCATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACtcttct                                             <  2:1219840/151‑1 (MQ=255)
                                                                                                            aTCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGa                                           >  2:907223/1‑150 (MQ=255)
                                                                                                              cccacacaAGCCGGAAAGAAAATATGCTGAAGGC‑CTCATAAAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAAt                                         <  3:1612108/148‑1 (MQ=255)
                                                                                                               gCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATc                                        >  2:1456530/1‑150 (MQ=255)
                                                                                                                caccaaacccggACAAAAAATATCCTTAAAGC‑CTAATATAAAAAC‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACtcttc                                              <  2:1237615/132‑1 (MQ=255)
                                                                                                                 aCTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATc                                        >  3:1078859/1‑148 (MQ=255)
                                                                                                                  cacaccccTGACAAAAAATATGTTGTAAGG‑CTAATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCa                                       <  3:244215/142‑1 (MQ=255)
                                                                                                                  cTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATc                                        >  2:200340/1‑147 (MQ=255)
                                                                                                                     agccctaaaaGAAAATATGGTAAAAGC‑TTAATAAAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCAGTCCAACTTTTCAAAACTCTTCTGAATCAGa                                     <  3:916243/138‑1 (MQ=255)
                                                                                                                     aaGCCTAAAAAAAAATTTGTTGTAAGG‑CTAATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCa                                       <  2:809254/145‑1 (MQ=255)
                                                                                                                      aGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATcccc                                >  3:494652/1‑151 (MQ=255)
                                                                                                                      aGCCTAACAAAAAATATGCTGTAGGG‑CTCAAATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAg                                      <  2:786433/145‑1 (MQ=255)
                                                                                                                        ccgaaaaaaaaaTATGCTTTAAGG‑CTAAAATAAAAAG‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATcc                                  <  3:1307211/139‑1 (MQ=255)
                                                                                                                        ccTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCtt                              >  2:17600/1‑151 (MQ=255)
                                                                                                                        ccTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCtt                              >  2:704284/1‑151 (MQ=255)
                                                                                                                            aaaaaaaaTATGCTGAAGGG‑CTCATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCttatta                          <  3:1279731/147‑1 (MQ=255)
                                                                                                                              aaaaaaTATGCTGAAAGG‑CTCATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCtta                             <  2:144277/144‑1 (MQ=255)
                                                                                                                              aaaaaaTATGCTGAAAGG‑CTAATATAAAAAG‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTatc                        <  3:1603667/149‑1 (MQ=255)
                                                                                                                              aGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTatc                        >  3:415270/1‑151 (MQ=255)
                                                                                                                                 aaaTATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTatcatc                     >  3:1601820/1‑151 (MQ=255)
                                                                                                                                       gcggTAAGG‑CTAATATAAAAAA‑CCGCCATTAGCTTATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCt                  <  2:1346739/145‑1 (MQ=255)
                                                                                                                                         tGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCaa              >  2:958966/1‑150 (MQ=255)
                                                                                                                                            aaGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTg          >  2:63403/1‑151 (MQ=255)
                                                                                                                                            aaGG‑CTCATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCaaa             <  2:1047530/148‑1 (MQ=255)
                                                                                                                                            aaGG‑CTCATAAAAAAAC‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATccc                   <  3:1625818/142‑1 (MQ=255)
                                                                                                                                              gg‑CTAATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGa        <  2:919733/151‑1 (MQ=255)
                                                                                                                                              gg‑CTAATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGa        <  2:785820/151‑1 (MQ=255)
                                                                                                                                              gg‑CTAATAAAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGt           <  3:1176957/148‑1 (MQ=255)
                                                                                                                                               g‑CTCATATAAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGaa       <  3:712854/151‑1 (MQ=255)
                                                                                                                                                 cTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAAc      >  2:1608674/1‑151 (MQ=255)
                                                                                                                                                        |                                                                                                                                                    
AAAAAATGATCTCATGCAGATGTTTTGTGAATGTGTTGGTTGACATTCATATGAAAAAAATCATAATTCCATCA‑TGTTTGTGTGGGG‑TCTTTTCTGTATCTTACGCATCGCACTCAAGCCTGACAGAAAATATGCTGTAAGG‑CTCATATCAAAAA‑CCGCCATTAGCTCATCAGGAAGAGCAGACGACAACCAGGATTGTTGTATGGTACGGGGTTCGAGGCCTCGATGGCGGTCCAACTTTTCAAAACTCTTCTGAATCAGATCCCCTTATTATCATCCCTGCAAAGTGGAACATTG  >  NC_000913/345179‑345475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑