| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,001,918 | 0 | A | C | 42.1% | 161.9 / 27.9 | 95 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| Reads supporting (aligned to +/- strand): ref base A (48/7); new base C (0/40); total (48/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.31e-20 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AGCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGG > NC_000913/2001769‑2002065 | aGCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAAc < 1:748044/151‑1 (MQ=255) ggTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAAcccc > 2:728256/1‑151 (MQ=255) gTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCccg > 2:805973/1‑151 (MQ=255) gTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCccg > 1:325739/1‑151 (MQ=255) ataGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCccgc < 2:1210950/150‑1 (MQ=255) ataGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGGTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCccgcc > 1:1086145/1‑151 (MQ=255) tGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGc > 1:242187/1‑151 (MQ=255) gAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCg > 1:1039251/1‑151 (MQ=255) tCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCgggg > 1:133817/1‑150 (MQ=255) gATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCGGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGc > 2:110905/1‑150 (MQ=255) tAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACg > 2:176642/1‑151 (MQ=255) aaaCAGCCCTGCGTTATATGATTTATCGGCATTATTATCCTTTTCTGCAGGTTTTTAAA‑TCGGAGGATTAGGGGGTAAAAGGGGGGTTTATTGGGGGT‑TTACAGTTAAATC‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGc < 2:1462874/147‑1 (MQ=255) aaaCAGCCCTGCGTTATATGAGTGATCGGTATGATTATCTGTTTCTGGGGGTTTTTTAA‑TGGGACGATTAGTGGGTGAAAGGAGGGTTTTTTTGGGGG‑TTAAAGAAAAATC‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCa < 1:1328913/148‑1 (MQ=255) aaaCAGCCCGGCTTTATATGAGTTATGGGCATGATTATCCTTTTCGGCGGGTTTTTTAA‑TCGGACGATTGGTGGGTGAAATGGGGGTTTTTTTGGGGG‑TTACAGTTAAATC‑CAAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCAc < 1:452601/149‑1 (MQ=255) aaCGGCCCTGCGTTATAGGATTTATCGGAATGATTATCCGTTTCTGCGGGTTTTTAAA‑TCGGACGATTGGGGGGTAAAAGGGGGGTTTATTTGGGGG‑TTACAGGTAAATC‑CCGGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGtt < 2:556864/151‑1 (MQ=255) aaCAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGtt > 2:1124697/1‑151 (MQ=255) ccTGCTTTATATGAGTTATCGGCATGATTATCCGTTTCTGCGGGGTTTTTAA‑TCGGACGATTAGGGGGTAAAATGAGGGTTTTTTGGGGGG‑TTACAGGTAAATT‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGAc < 2:249641/151‑1 (MQ=255) cTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTCGTGGGTGAACTGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAACACGTTGCTGAc > 1:898745/1‑150 (MQ=255) gCGTTATATGATTTATCGGCATGATTATCCGTTTCGGCGGGTTTTTAAA‑TCGGACGATTGGTGGGTGAAATGGGGGTTTATTTGGGGG‑TTACAGGTAATTC‑CCGGGAAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACa < 1:985806/149‑1 (MQ=255) gCGTTATATGAGTTATGGGCATGATTATCCTTTTCTGCGGGTTTTTTAA‑TCGGAGGATTGGGGGGTGAAATGAGGGTTTTTTTGGGGG‑TAAAAGGTAAATC‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGAc < 1:1247490/148‑1 (MQ=255) cGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAAt > 1:552517/1‑151 (MQ=255) ttATATGAGTTATCGGCATGATTTTCGTTTTCTGCGGGTTTTTTAA‑CGGGACGATGAGGGGGTGAAAGGAGGGTTTTTTTGGGGG‑‑TAAAAGTAAATTCCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAAtt < 1:1278684/150‑1 (MQ=255) ttAAATGAGTTATCGGCATGATTGCCGTTTTCGGCAGGTTTTTTAA‑CGGAACGATTGGTGGGGGAAAGGGGGGTTTATTTGGGGT‑TTGAGGATAAATT‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGc < 2:1481039/141‑1 (MQ=255) atGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCt > 1:649192/1‑151 (MQ=255) atGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCt > 2:970251/1‑151 (MQ=255) gatttATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAAGGGGGGTTTTTTTGGGGG‑TTACAGTAAAATC‑CGAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTgcg < 1:1289552/144‑1 (MQ=255) gAGTTATCGGCATGATTATCCGTTTCTGCAGGTTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGTTTTTTTGGGGG‑TTACAGGTAAATT‑CCAGGAAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCttt < 2:1208095/151‑1 (MQ=255) caGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCttt > 2:477430/2‑151 (MQ=255) ttttgggaaTGATTCCCCGTTTC‑GCAAGGTTTTTAATTCGGAAGTTTAGGGGGTAAAAGGGGGGTTTTTTTGGGGG‑TTA‑AAGTAAATTCCCAGGAAAAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTAt < 1:550839/142‑1 (MQ=255) tATCGGCATGATTTTCCTTTTCTGCGGGTTTTTTAA‑TGGGACGTTTAGTGGGTAAAAGGGGGGTTTTTTTGGGGT‑TTACAGGTAAATC‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATg < 2:1026550/150‑1 (MQ=255) cGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGc > 1:973946/1‑151 (MQ=255) cGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGc > 2:1455531/1‑151 (MQ=255) cGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGc > 2:875477/1‑151 (MQ=255) ggaaTGATTATCCTTTTCTGCGGGTTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGTTTATTGGGGGT‑TTACAGGTAAATC‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGt < 2:801893/144‑1 (MQ=255) ggaaTGATTATCCGTTTCTGCAGGTTTTTTAA‑TCGGACGATTAGTGGGTGAAATG‑GGGGTTTTTTGGGGGTTTACAGGAAAATT‑CCAGGCAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGc < 2:535321/147‑1 (MQ=255) ggCATGATTATCCGTTTCTGGAGGGTTTTTAA‑TGGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGtt < 1:579605/148‑1 (MQ=255) ggCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGcc > 1:758062/1‑151 (MQ=255) gCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCg > 2:1209918/1‑151 (MQ=255) aTGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGCGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGAGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCgg > 2:381721/1‑150 (MQ=255) ttATCCTTTTCTGCGGGTTTTTTAA‑TCGGACGATTAGGGGGTAAAATGGGGGTTTTTTTGGGGT‑TTACAGGAAATTT‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgc < 2:395586/150‑1 (MQ=255) ttATCCTTTTCTGCAGGTTTTTTAA‑CCGGACTATTAGTGGGTGAAATGAGGGTTTTTTGGGGGG‑TTACAGGAAAATT‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCg < 2:1500376/145‑1 (MQ=255) gTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGATATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAACACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcggcg > 2:156588/1‑148 (MQ=255) tttCTGCAGGTTTTTTAA‑TGGGACGTTTAGGGGGTGAAATGAGGGTTTATTGGGGGT‑TTACAGGTAAATC‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTa < 2:1190545/149‑1 (MQ=255) tttCTGCAGGTTTTTAAA‑TCGGACGATTAGTGGGTAAAATG‑GGGGTTTTTTGGGGGTTTACAGGTAAATT‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTaa < 2:1020075/150‑1 (MQ=255) tttCTGCAGGGTTTTTAA‑GCGGACGTTTGGGGGGTAAAAGGGGGGTTTTTTTGGGGG‑TTACAGTTAAATT‑CCAGGAAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGt < 1:381385/148‑1 (MQ=255) ttttGCAGGTTTTTTAA‑AGGAAGAATTGGGGGGAGAAAGGGGGGTTTGTTGGGGGG‑TAAAAGTAAAATC‑CCGGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTa < 2:1252700/145‑1 (MQ=255) ttCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAAc > 1:920840/1‑151 (MQ=255) ttcggaGGGTTTTTAATTCGGACTATTGGGGGGTAAAAGGAGGGTTTATTTGGGGT‑TAAGAGGTAATTT‑CCAGAAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTa < 1:220945/143‑1 (MQ=255) tCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAAc > 2:358255/1‑150 (MQ=255) tGCGGGTTTTTTAA‑TCGGACGATTAGGGGGTAAAATGGGGGTTTTTTTGGGGT‑TAAAAGGTAATTC‑CAAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGc < 1:410538/150‑1 (MQ=255) gcggggTTTTTAA‑TCGGACGTTTAGGGGGTAAAATGGGGGGTTTTTTGGGGG‑TAACAGGTAAATT‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACg < 2:1209930/145‑1 (MQ=255) ttttAA‑TCGGACGATTAGTGGGTAAAAGGAGGGGTTTTTGGGGGG‑TTACAGGAAAATC‑CCGGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCg < 2:1157974/150‑1 (MQ=38) a‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTa > 1:1490661/1‑150 (MQ=255) aCGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaaaa > 1:1431061/1‑150 (MQ=255) aCGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaaaa > 2:964014/1‑150 (MQ=255) gATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtg > 2:1148458/1‑151 (MQ=255) gTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCa > 2:278305/1‑150 (MQ=255) tGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCaa > 2:1032570/1‑150 (MQ=255) gggTGAAATGAGGGTTTTTTTGGGGG‑TTACAGGTAAATT‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAAt < 1:559679/151‑1 (MQ=255) gggTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAAt > 2:289736/1‑151 (MQ=255) tGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTc > 1:859637/1‑150 (MQ=255) gAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCa > 2:1431539/1‑150 (MQ=255) aaaTGGGGGTTTTTTTGGGGG‑TTACAGAAAAATC‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAAtt < 1:818534/147‑1 (MQ=37) aaaTGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAAt > 2:1121051/1‑151 (MQ=255) aaaGGAGGGTTTTTTTGGGGG‑TTAAAGGTAAATC‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCaa < 1:291566/150‑1 (MQ=37) aaTGGGGGTTTTTTTGGGGG‑TTAAAGATAATTT‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATa < 1:385087/151‑1 (MQ=25) aaTGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAAt > 1:176968/1‑150 (MQ=255) aTGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATa > 2:700225/1‑150 (MQ=255) aTGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATa > 1:163057/1‑150 (MQ=255) tGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATaa > 1:1400982/1‑150 (MQ=255) gAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAAt > 2:1110505/1‑151 (MQ=255) gggtTTATTGGGGGT‑TTACAGTTAAATC‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAAtt < 2:168194/150‑1 (MQ=37) ggtttttttGGGGG‑TTACAGGTAAATC‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGc < 1:408792/145‑1 (MQ=255) ttttttGGGGG‑TTACAGGTAAATT‑CCAGGCAAAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCa < 2:558730/146‑1 (MQ=255) tttGGGGG‑TTAAAGAAAATTC‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAAtt < 1:960409/149‑1 (MQ=25) ttggggttaaaagaaaaaTT‑CAAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCa < 1:928032/135‑1 (MQ=25) ggggg‑TAACAGGAAAATT‑CAGGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATTCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAAc < 2:1277386/150‑1 (MQ=37) gggg‑TTACAGTTAAATT‑CAAGAAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACtt < 1:43375/151‑1 (MQ=37) gg‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGt > 2:268490/1‑151 (MQ=255) gg‑TTACAGGTAAATC‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGt < 1:1515540/151‑1 (MQ=255) gtttACGGTTAAATC‑CCAGACAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGt < 2:1552684/149‑1 (MQ=37) g‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGt > 2:355667/1‑150 (MQ=255) ggaaattt‑CCAGGAAAAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTg < 1:805927/145‑1 (MQ=255) aaaTT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGAt > 1:1174567/1‑150 (MQ=255) aTT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATa > 1:923646/1‑149 (MQ=255) tcccAGGAAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAag < 1:277083/148‑1 (MQ=255) ccAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcg < 2:1183284/150‑1 (MQ=255) caagaaaGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAag < 1:87009/142‑1 (MQ=255) cAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgc > 1:479379/1‑150 (MQ=255) cAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcg < 2:339917/149‑1 (MQ=255) aGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgc > 2:787362/1‑149 (MQ=255) gCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagc > 1:1207959/1‑150 (MQ=255) aGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc < 2:297699/150‑1 (MQ=255) aGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc > 1:1160284/1‑150 (MQ=255) gAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCAt > 1:482205/1‑151 (MQ=255) aaaaaaCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATc > 1:1166453/1‑150 (MQ=255) aaaaCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCTGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAgg > 2:944646/1‑151 (MQ=255) | AGCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGG > NC_000913/2001769‑2002065 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |