| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 357,873 | 0 | C | T | 42.5% | 105.2 / 41.0 | 80 | S273N (AGC→AAC) | cynR | transcriptional activator of cyn operon; autorepressor |
| Reads supporting (aligned to +/- strand): ref base C (33/13); new base T (0/34); total (33/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.64e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAG‑CTTTAAGCCCGTCATGTTGTG‑TGGCAATCGCTGCT‑‑GGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGA > NC_000913/357725‑358010 | aCTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTa < 1:955844/151‑1 (MQ=255) cTGACCTCGTAGTCTTGATACGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTa < 4:584492/150‑1 (MQ=255) cTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTa < 4:1188186/150‑1 (MQ=255) cTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTAt > 4:602084/1‑151 (MQ=255) tGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTAtt > 1:1204611/1‑151 (MQ=255) gAACTCGTAGGCCTGCTAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGAGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGACATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTTTGCCAGCTAttt > 1:1252609/1‑151 (MQ=255) gAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTAttt < 4:621991/151‑1 (MQ=255) gAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTAt < 1:319183/149‑1 (MQ=255) aCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTAttttt < 4:1066164/151‑1 (MQ=255) aCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTAtttt < 4:331863/150‑1 (MQ=255) tCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTcc > 2:189856/1‑151 (MQ=255) cGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTccg < 4:169584/151‑1 (MQ=255) gTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTccgc < 4:141328/151‑1 (MQ=255) tAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTccgcc > 4:1328856/1‑151 (MQ=255) aGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTccgccg < 1:1292118/151‑1 (MQ=255) cTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGcaac > 1:1453369/1‑151 (MQ=255) gATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGcaaca < 1:1055590/150‑1 (MQ=255) aaGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAc < 4:311546/151‑1 (MQ=255) aGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAATTG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAcc > 1:960258/1‑151 (MQ=255) cGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAccg < 4:842140/150‑1 (MQ=255) tAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAAccgccg > 1:80790/1‑151 (MQ=255) aGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGt > 1:841046/1‑151 (MQ=255) cgcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTtc > 4:1024163/1‑151 (MQ=255) cgcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTtc > 2:174553/1‑151 (MQ=255) aaTTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCagt > 4:709733/1‑149 (MQ=255) ttCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTg > 4:1091658/1‑151 (MQ=255) ccccccGCAGCCGTGTGTCGGGGCCTCCCGTGTTTCTTTC‑CCCCCAACACCCGCGCTTTTATCAAACGCCTTGTAAAAAATTC‑CCTC‑CGGGGCGGTTGTCGGCCGGTTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCagtag < 3:180308/143‑1 (MQ=255) cAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCg > 4:643699/1‑151 (MQ=255) aGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCgg > 4:265081/1‑151 (MQ=255) aGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCgg > 1:1248575/1‑151 (MQ=255) ccGCAGCCTTGTGTCGGCGCCTCCCGTTTTTCTTTC‑CCGCAAACACCCGCGTTTTTACCCACCGCCGTGTAAAAAAATG‑CCTC‑CGCGGCGGTTGTCTGCCAGTTTTTTTCCCGCCGCAAAAAACCCGCCGTTCTCTCCAGTAGTGGCggg < 4:992550/150‑1 (MQ=255) ccGCAGCCTTGTGTCAGCGGCTCCCGTGTTTCTTTC‑CCCCCAACACCCGCGCTTTTCCCCACCCCCTTGTGCAAAAATC‑CCTC‑CGGGGGGGCTGTCTGCCAGTTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCg < 1:983614/148‑1 (MQ=255) ccGCAGCCCTGTGTCAGCGGCTACCGTGTTTCTTTC‑CCGCCAACACCCGCGCTTTTACCCAACGCCATGTGAAAAAATC‑CCTG‑CGCGGCGGCTGTCTCCCAGTTTTTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCgg < 1:994694/149‑1 (MQ=255) ccGCAGCCCTGTGCCGGCGCCCCCCGTGTTTCTTTC‑CCCCAAACACCCGCGTTTTTACCCACCCCCATGTAAAAAATTG‑CCTC‑CGGGGGGGCGGCCGCCCAGTTTTTTTCCCGCCAAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCggg < 4:292756/150‑1 (MQ=255) ccGCAGACTTGTGTCGGGGCCTCCCGTGATTCTTTC‑CCCCCAACACCCGCCCTTTTACCCAACGCCTTGTG‑AAAAATT‑CCTTCCGGGGCGGTTGTCGGCCAGTTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCgg < 1:56401/149‑1 (MQ=255) cGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCggggg > 4:496844/1‑150 (MQ=255) cGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCgggg > 1:372179/1‑150 (MQ=255) cagccgtgtgCCAGCGCCTCCCGTGATTCTTCC‑CCCCCAACACCCGCGCTTTTCCCCAACGCCATGTGAAAAAATG‑CCTC‑CGGGGCGTCTGTCTGCCAGTTTTTTTCCCCCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCaa < 4:1232255/145‑1 (MQ=255) gcctgtgcccAGCGGCAACCGTGTTTCTTTC‑CCGCAAACACCCGCACTTTTACCAAACGCCAGGT‑AAAAAATGCCCGC‑CGGGGGGGCTGTCTGCCAGTTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCaa < 4:1202687/140‑1 (MQ=255) gcccTGTGCCAGGGCCTCCCGTGTTTCTTTC‑CCCCCAACACCCGCGCTTTTACCCACCGCCTTGTGAAAAAATC‑CTTC‑CGGGGGGGCTGTCTGCCATTTTTTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAaga < 1:156131/149‑1 (MQ=255) aCCTGTGTCAGCGGCTCCCGTGATTCATTT‑CCCCCAACACCCGCGATTTTACCCAACCCCATGTCAAAAAATG‑CCTT‑CGCGGGGGCTGCCTCCCAGTTTTTTTCCCCCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCgg < 1:161173/143‑1 (MQ=255) ccttgtccggCGGCTCCCGTGATTCATTC‑CCCCCAACACCCGCGCTTTTACCCACCCCCTTGTGCAAAATTC‑CCTC‑CGCGGCGGTTGCCTGCCAGTTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAag < 1:569720/139‑1 (MQ=255) cTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCggggggggag > 4:15904/1‑143 (MQ=255) cTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCgggg > 1:878203/1‑143 (MQ=255) tgtgTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCggggg > 3:31396/1‑142 (MQ=255) ttccAGCGGCTCCGTTGATTATTTC‑CCGCCAACACCCGCGCATTTACCCACCCCCTTGTGAAAAATCG‑CCTC‑GGGGGGGGCTGTCTGCCAGTTTTTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCa < 1:882375/139‑1 (MQ=255) tgccAGCGCCTCCCGTAATTCTTTC‑CCCCCAACACCCGCCCTTTTACCCACCCCAATGTGAAAAAATG‑CCTC‑CGCGGCGGCTGTCTCCCACTTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAAt < 1:924682/147‑1 (MQ=255) gtCGGCGGCTCCCGTTATTCTTTC‑CCGCCAACCCCCGCGCATTTACCCACCGCCATGTGCAAAAAGC‑CCTC‑CGGGGGGGCTTTCTGCCGGTTATTTTCCCGCCAAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAg < 4:221312/151‑1 (MQ=255) cAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCgggggcagcgcaaa > 4:297361/1‑137 (MQ=255) gCGGCTCCCGTGTTTCTTTC‑CCGCCACCACCCGCGCTTTTACCCACCGCCTTGTAAAAAAATG‑CTTC‑GGGGGCGGCTGTCTCCGAGTTTTTTTCCCCCCCCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAg < 1:618516/147‑1 (MQ=255) gCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGGAAAGAAAAAA‑Cttt > 1:1373059/1‑151 (MQ=255) gCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCGAGAGgaaaaagatt > 4:745333/1‑144 (MQ=255) ggCTCCCGTGATTCATTC‑CCGCCAACACCCGCGCTTTTACCCACCGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGTTTTTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAg < 1:52958/145‑1 (MQ=25) gCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGGAGAGAAAAAA‑ATTTaa > 1:903117/1‑150 (MQ=255) aCCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAAAGAAAAAGCCTTTAAAcc > 1:77570/1‑151 (MQ=255) ccGTGTTTCTTTC‑CCCCCAACACCCGCGCTTTTACCCACCCCCATTTGAAAAATTC‑CCTC‑CGCGGCGGCTGTCTCCCAGTTTTTTTCCCGCCGAAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAG‑CTTTAAGCCCg < 1:262317/151‑1 (MQ=255) ccGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGCGGAGaaaaaaattttaacccc > 4:268662/1‑137 (MQ=25) ccgtaTTCCTTTCCCGCCACCAACCGCCATTTTACCCACCGCCATGTCAAAAAATG‑CCTC‑CGCGGGGGCTGTCTGCCAGTTATTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAG‑CTTTAAGccc < 4:313013/146‑1 (MQ=255) taattcttcccccccAACACCCGCGCTTTTACCCACCCCCTTGTAAAAAAAGC‑CCTC‑CGCGGGGGCTGCCTGCCAGTTTTTTTCCCGCGAAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAG‑Ct < 4:723792/126‑1 (MQ=255) ttCTTTC‑CCCCCAACACCCGCGCTTTTACCCACCCCCTTGTGAAAAAATG‑CTTC‑CGGGGCGGCTGTCTCCCAGTTTTTTTCCCGCCGAAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAG‑CTTTAAGCCCGTCAtg < 1:324729/150‑1 (MQ=255) ttccccccAACACCCGCGCTTTTACCCACCCCCTTGTGAAAAAATC‑CCTC‑CGGGGCGGTTGTCGCCCAGTTTTTTTCCCCCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAG‑CTTTAAGCCCGTCAtgt < 1:663391/141‑1 (MQ=255) ccccccaccaCCCGCGCTTTCACCCAACCCAATTTGAAAAAATG‑CCGC‑CGCGGCGGCTGTCTGCCAGTTTTTTTCCCGCCCAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAG‑CTTTAAGCCCGTCAtgttgt < 4:931769/144‑1 (MQ=255) ccgcccttttccccACCGCCATTTCAAAAAATC‑CTTC‑CGCGGGGGCTTTCTCCCATTTTTTTTCCCCCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAG‑CTTTAAGCCCGTCATGTTGTG‑TGGCAATCgctg < 1:1440791/138‑1 (MQ=255) cgctcttttACCCAACGCAATGTGAAAAAGTC‑CCTT‑GGCGGCGGCGTTCGGCCATTTTTTTTCCCGCCCCAAAAAACCCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAG‑CTTTAAGCCCGTCATGTTGTG‑TGGCAATCgctgct < 4:1030254/145‑1 (MQ=255) cgcTTTTACCCACCCCCATGTAAAAAAATC‑CCTC‑CGGGGGGGCTTTCTGCCAGTTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAG‑CTTTAAGCCCGTCATGTTGTG‑TGGCAATCGctgct‑‑g < 1:1295545/150‑1 (MQ=255) tttATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGCAGAGAAAAAG‑CATTTAACCCCCCCTGTTGTG‑TGGCAATCgc > 1:399145/1‑141 (MQ=37) tttACCCACCCCCATGTAAAAAATTC‑CCCC‑CGGGGGGGCTGTCTCCCATTTTTTTTCCCGCCAAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAG‑CTTTAAGCCCGTCATGTTGTG‑TGGCAATCGCTGCT‑‑GGt < 4:146337/148‑1 (MQ=255) cGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGGAGAGAAAAAA‑CATTAAACCCCCCATCTTTTG‑TGGGAAACGCtggt‑‑gggtaaaaattg > 1:1154509/1‑138 (MQ=25) tgtgCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCGAGGGAAAAAA‑CATTTAACCCCTCCTTTTGTG‑TGGGGAACGCTGCT‑‑GGGGACAAAATGGGAAggg > 1:568071/1‑150 (MQ=255) aaaaaTG‑CCTT‑CGGGGCGGTTGTCCGCCACTTTTTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAG‑CTTTAAGCCCGTCATGTTGTG‑TGGCAATCGCTGCT‑‑GGTAACAATGTGGAAAGGGAAg < 1:462100/148‑1 (MQ=255) aaaaaTC‑CCTT‑GGCGGCGGCTGTCGCCCAGTTTTTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAG‑CTTTAAGCCCGTCATGTTGTG‑TGGCAATCGCTGCT‑‑GGTAACAATGTGGAAAGGGaa < 4:1336957/147‑1 (MQ=255) aaaaTG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGAAGAGAAATAT‑ATTTTACACCCCCTTGTTTTG‑TGGGCATCCCCGCTGGGGTAAAAATG‑GGAAAGGGagtggg > 2:19597/1‑146 (MQ=255) aaaTG‑CCTC‑CGGGGGGGCTGTCGCCCATTTTTTTTCCCGCCAAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAG‑CTTTAAGCCCGTCATGTTGTG‑TGGCAATCGCTGCT‑‑GGTAACAATGTGGAAAGGGAAGTgcgg < 4:429547/151‑1 (MQ=255) aaaTC‑CCTT‑CGCGGCGGCTGTCTCCCAGTTTTTTTCCCCCCAAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAG‑CTTTAAGCCCGTCATGTTGTG‑TGGCAATCGCTGCT‑‑GGTAACAATGTGGAAAGGGAAGTgcgg < 1:1350146/151‑1 (MQ=255) aaTG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAAAAA‑ATTTTAACCCCTCCTGTTGTG‑TGGGAATCGCTGCT‑‑GGTGAAAAAGTGGAAAGGGGAGGgcggg > 1:842602/1‑150 (MQ=255) aTG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGGAGGGAAAAAA‑CATTAAACCCCTCCTGTTTTGTTGGGAACCG‑TGCT‑‑GGGTAAAATTTGGGAAGGGGAgggggggg > 3:91003/1‑144 (MQ=255) ccTT‑GGGGGCGGCTTTCTGCCAGTTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAG‑CTTTAAGCCCGTCATGTTGTG‑TGGCAATCGCTGCT‑‑GGTAACAATGTGGAAAGGGAAGTGCGGCGa < 1:888597/149‑1 (MQ=255) ggcggcTGTCTGCCAGTTTTTTTCCCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAG‑CTTTAAGCCCGTCATGTTGTG‑TGGCAATCGCTGCT‑‑GGTAACAATGTGGAAAGGGAAGTgcggcg < 2:93248/141‑1 (MQ=255) ggcgcttttCTGCCAGTTTTTTTCCCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAG‑CTTTAAGCCCGTCATGTTGTG‑TGGCAATCGCTGCT‑‑GGTAACAATGTGGAAAGGGAAGTGCGGCGaa < 4:1252503/135‑1 (MQ=255) tctcCCAGTTTTTTTCCCGCCAAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAG‑CTTTAAGCCCGTCATGTTGTG‑TGGCAATCGCTGCT‑‑GGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGa < 1:645096/146‑1 (MQ=255) | ACTGAACTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTT‑CCGCCAACAACCGCGCATTTATCCAACGCCATGTGCAAAAATG‑CCTT‑CGCGGCGGCTGTCTGCCAGCTATTTTTCCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAG‑CTTTAAGCCCGTCATGTTGTG‑TGGCAATCGCTGCT‑‑GGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGA > NC_000913/357725‑358010 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |