| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,001,911 | 0 | G | A | 46.2% | 97.9 / 53.4 | 93 | intergenic (‑122/+199) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein (flagellin) |
| Reads supporting (aligned to +/- strand): ref base G (38/12); new base A (0/43); total (38/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.25e-16 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCAT > NC_000913/2001764‑2002061 | ccTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGaa > 2:251299/1‑150 (MQ=255) ttCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGaaaa > 1:490788/1‑150 (MQ=255) tCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGaaaaa < 1:1281217/150‑1 (MQ=255) cAGCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGaaaaaaa < 2:1167315/151‑1 (MQ=255) aGCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAAc > 1:225776/1‑151 (MQ=255) gCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAAcc < 2:1481258/151‑1 (MQ=255) cGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAAccc > 1:548539/1‑151 (MQ=255) gTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCccg > 2:1186139/1‑151 (MQ=255) ataGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCccgc < 1:796517/150‑1 (MQ=255) ataGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCccgc < 2:1285553/150‑1 (MQ=255) ataGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCccgc < 2:122720/150‑1 (MQ=255) ataGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCccgc < 1:135036/150‑1 (MQ=255) taGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCGGGCAGAAAAAAACCccgcc < 2:600435/150‑1 (MQ=255) agagTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCgg < 1:314830/151‑1 (MQ=255) gtaaaTCCACGATAAACAGCCCTGTGTTTTAAGGGTTACGGGCAGGATTATCCGTTTCTGCAGGGTTTTTATTCGGACGATGAGGGGGTGAAATGAGGGGTTATTTGGGGG‑TTAGAGGAAAATT‑CCAGAAAAAAAAAACCCccgccg < 2:611623/144‑1 (MQ=255) aTTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCggg > 2:341218/1‑151 (MQ=255) cACGAAAAAAAGCCCTGCTTTATAGGAGTTATCGGCATGATTTTCCGTTTCGGCGGGGTTTTTAATCGGACGATTAGGGGGTAAAAGGGGGGTTTTTTTGGGGT‑TTACAGGAAAATC‑CCAGGCAGAAAAAAACCCCGCCGGTGGCgg < 1:1496521/147‑1 (MQ=255) aCGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGa > 1:336572/1‑149 (MQ=255) gATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGa > 2:1385560/1‑147 (MQ=255) aTAAACAGCCCTGTGTTATATGAGTTATCGGCATGATTTTCCTTTTCTGCAGGTTTTTTAACCGGACGTTTGGTGGGTAAAATGGGGGTTTTTTTGGGGG‑TTAAAGTTAAATT‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCAc < 2:1101829/151‑1 (MQ=255) aTAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCAc > 1:978156/1‑151 (MQ=255) aaaCAGCCCTGCTTTATATGATTTACCGGCATGTTTATCCGTTTCTGCGGGTTTTTTAATCGGACGATTAGGGGGTGAAATGGGGGTTTTTTGGGGGG‑TTACAGGTAAATT‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCAc < 1:1106381/149‑1 (MQ=255) gCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACaa > 1:1368979/1‑150 (MQ=255) gTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAAtt > 2:428499/1‑151 (MQ=255) ttATATGATTTATCGGCATGATTATCCGTTTCTGCAGGTTTTTTAATCGGACGATTAGTGGGTAAAATGGGGGTTTTTTGGGGGG‑TTACAGGTAAATC‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAAtt < 1:109474/150‑1 (MQ=255) ttATATGAGTTACCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGGGGGTGAAATGAGGGTTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAAtt < 1:129091/150‑1 (MQ=255) tatGAGTTATCGGCATGATTACCCGTTTCTGCAGGTTTTTTAATGGGACGATTAGGGGGTAAAAGGAGGGGTTATTGGGGGG‑TTACAGGTAAATC‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTgc < 1:82726/149‑1 (MQ=255) atGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCt > 2:1238759/1‑151 (MQ=255) gTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTAt > 2:1014633/1‑151 (MQ=255) ttATCGGCATTATTATCCGTTTCTGCAGGGTTTTTAATCGGACGTTTAGTGGGTAAAATGGGGGTTTTTTGGGGGG‑TTACAGGTAAATT‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTa < 1:644159/149‑1 (MQ=255) ttAGCGGCATGATTACCGGTTTCGGCGGGGTTTTTAATCGGACGATTGGTGGGTAAAATGAGGGTTTATTGGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTgcgc < 1:270725/145‑1 (MQ=255) cgtcttgtttttCCTTTTCTGCGGGTTTTTTAATGGAACTTTTAGGGGTTAAAAGGGGGGTTTATTGGGGTT‑TTACAGGAAAATC‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGtt < 1:958946/138‑1 (MQ=255) ggCATATTTATCCGTTTCTGCGGGTTTTTTAATCGGACGATTAGTGGGGGAAATGGGGGGTTATTTGGGGG‑TTACAGGAAAATC‑CCGGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGc < 1:846194/150‑1 (MQ=255) gCATGATTTCCCGTTTCTGCAGGTTTTTTAATCGGAGGATTAGGGGGTAAAATGAGGGTTTATTGGGGGG‑TTACAGGTAAATC‑CCGGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCg < 1:359620/151‑1 (MQ=255) aTGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCgg > 2:387281/1‑150 (MQ=255) ttATCCGTTTCGGCAGGTTTTTAAATCGGACGATTAGTGGGTAAAAGGAGGGGTTTTTGGGGGT‑TTACAGGTAAATT‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATg < 1:269271/149‑1 (MQ=255) ttACCCTTTTCTGCAGGTTTTTAAATCGGACGTTTAGTGGGGAAAAGGGGGGTTTATTGGGGGG‑TTACAGGAAAATT‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgc < 1:1094035/150‑1 (MQ=255) aTCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcggc > 2:371781/1‑151 (MQ=255) tCCTTTTCGGCAGGTTTTTTAAGCGGACGATTGGGGGGTAAAAGGAGGGTTTTTTTGGGGG‑TAACAGGAAAATC‑CCAGAAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcggc < 2:1249036/150‑1 (MQ=255) ccGTTTCTGCGGGTTTTTTAAGCGGACGATTGGGGGGTGAAATGGGGGTTTATTGGGGGG‑TTACAGATAAATC‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcgg < 1:340381/148‑1 (MQ=255) cGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCCTTATGTTGCCGGATGCGGCGt > 2:1268469/1‑150 (MQ=255) tttCTGGAGGGTTTTTAATCGGACGTTTAGTGGGTAAATTGGGGGTTTTTTTGGGGG‑TTACAGAAAAATT‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcggcg < 2:1475927/147‑1 (MQ=255) tttCTGCGGGTTTTTAAATCGAGCGATTAGGGGGAAAAATGAGGTTTTTTTTGGGGT‑TTAAAGGTAAATC‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTaa < 2:990340/150‑1 (MQ=255) tttCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTaa > 2:796919/1‑150 (MQ=255) tCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAAc > 2:408032/1‑150 (MQ=255) gcggggTTTTTAATCGGACGATTAGTGGGTAAAATGGGGGGTTTTTTGGGGT‑TTACAGTAAAATT‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACg < 2:1257190/145‑1 (MQ=255) gagggttttttAATGGGACGATTAGTGGGTAAAAGGGGGGTTTTTTGGGGGG‑TTACAGGTAAATC‑CCGGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGc < 1:1185186/143‑1 (MQ=255) gCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCt > 2:1279577/1‑151 (MQ=255) ggttttttAATCGGACGATTAGTGGGTAAAAGGAGGGGTTTTTTGGGGG‑TTACAGGTAAATC‑CCAGGCAAAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTa < 1:921534/147‑1 (MQ=255) tttttAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCg > 1:902042/1‑151 (MQ=255) tttttAATCGGACGATTAGTGGGTAAAATGGGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGAAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTAt < 1:1318495/148‑1 (MQ=255) tttttAAGCGGACTTTTAGGGGGTAAAAGGAGGGTTTTTTTGGGGT‑TCACAGGAAATTT‑CAAGGAAAAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATcc < 1:999810/150‑1 (MQ=255) ttttaAATCGGAGGATTAGTGGGTAAAATAGGGGGTTATTGGGGGT‑TGACGGATAATTC‑CCAGCAAAAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTTCCGGATGCGGCGTAAACGCCtt < 1:1429689/146‑1 (MQ=255) tttAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGc > 2:12800/1‑151 (MQ=255) tttAATCGGACGATTAGTGGGTAAAATGAGGGGTTATTTGGGGG‑TTACAGGAAAATT‑CCAGGAAAAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCgg < 1:773757/150‑1 (MQ=255) aaTCGGACGTTTAGTGGGTAAAATGGGGGTTTTTTTGGGGG‑TTACA‑GTAAATTCCCGGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCt < 2:1525645/150‑1 (MQ=37) aaTCGGACGATTAGGGGGTAAAAGGGGGGGTTTTTTGGGGG‑TTAAAGGTAAATC‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTa < 2:879909/151‑1 (MQ=38) aTCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTAc > 2:1191909/1‑151 (MQ=255) ggACGATTAGTGGGTGAAATGGGGGTTTTTTTGGGGG‑TTACAGGTAAATC‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaaa < 2:1152971/151‑1 (MQ=38) aCGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaaaa > 1:208267/1‑150 (MQ=255) aCGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaaaa > 1:868228/1‑150 (MQ=255) ttggTGGGTAAAATGAGGGTTTTTTTGGGGG‑TTACAGGTAAATC‑CCAGGCAAAAAAACCCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACa < 2:617009/140‑1 (MQ=37) gggggTAAAAGGGGGGGTTTTTTGGGGG‑TTACAGGTAAATC‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGc < 2:270133/147‑1 (MQ=37) gggTAAAATGAGGGTTTATTGGGGGT‑TAACAGGTAAATT‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAAt < 1:147637/151‑1 (MQ=37) gggAGAAAGGGGGGTTTTTTGGGGGG‑TTACAGGTAAATT‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtgtg < 2:946759/146‑1 (MQ=37) ggTAAAATGGGGGTTTATTTGGGGG‑TTACAGGAAAATC‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAAtt < 2:460501/151‑1 (MQ=37) gAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCa > 1:179285/1‑150 (MQ=255) aGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAAtt > 1:1162648/1‑151 (MQ=255) aGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAAtt > 1:830791/1‑151 (MQ=255) ggggTTTTTTGGGGG‑TTAAAGGTAAATC‑CCAGAAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAAtt < 2:490769/150‑1 (MQ=37) ggggTTATTTGGGGG‑TTAGAGAAAATTT‑CCGGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAAtt < 1:716452/150‑1 (MQ=37) gggTTTTTTGGGGGTTTACAGAAAAATC‑CCGGAAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAAtt < 1:41832/150‑1 (MQ=25) ggTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGc > 2:344386/1‑150 (MQ=255) tATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAAtt > 1:1464152/1‑151 (MQ=255) ttgggggt‑TTACAGGAAAATC‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAAtt < 1:436657/146‑1 (MQ=37) ttGGGGT‑TTACAGGAAACTC‑CCAGAAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCa < 2:426647/150‑1 (MQ=25) ttGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCa > 1:812632/1‑150 (MQ=255) ttGGGGG‑CTACAGGGAAATT‑CAAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGATGAGAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTCATCCGGCCTACAAAAATGAGCAAATTCAATAAATTGCAATTCa > 2:1211672/1‑150 (MQ=37) tgggggg‑TTACAGGTAAATC‑CCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCa < 1:169189/148‑1 (MQ=255) ggggg‑TTACAGGAAAATC‑CCAGGAAAAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCa < 1:1501110/148‑1 (MQ=255) ggg‑TTACAGGTAAATC‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTg < 2:339809/151‑1 (MQ=255) cAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGcc > 1:1227693/1‑151 (MQ=255) aaaTT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGAt > 1:1309265/1‑150 (MQ=255) aaaTT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGAt > 1:618107/1‑150 (MQ=255) aaaTT‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATa < 2:225767/151‑1 (MQ=255) aaaTC‑CCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGa < 1:1190976/149‑1 (MQ=255) aaTT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATa > 2:217706/1‑150 (MQ=255) aTT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATa > 1:818634/1‑149 (MQ=255) ccAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgc > 1:1130009/1‑151 (MQ=255) cAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgc > 1:23696/1‑150 (MQ=255) aGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgca < 1:960007/150‑1 (MQ=255) ggCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgca < 2:1238258/149‑1 (MQ=255) ggCAAAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcag < 2:60393/150‑1 (MQ=255) gAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCAt > 1:781633/1‑151 (MQ=255) | CCTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATT‑CCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCAT > NC_000913/2001764‑2002061 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |