Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,350,844	0	A	C	43.3%	178.4 / 18.7	97	L728V (TTA→GTA)	arcB	aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB
Reads supporting (aligned to +/- strand):  ref base A (46/9);  new base C (0/42);  total (46/51)
Fisher's exact test for biased strand distribution p-value = 5.77e-19
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGT  >  NC_000913/3350697‑3350992                                                                                                                                                     |                                                                                                                                                     tAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAAcc                                                                                                                                                    <  2:85529/150‑1 (MQ=255)    tGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCAc                                                                                                                                                >  2:1012055/1‑151 (MQ=255)    tGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCAc                                                                                                                                                >  2:486585/1‑151 (MQ=255)     ggCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACt                                                                                                                                               <  1:413422/151‑1 (MQ=255)        ttttGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGAc                                                                                                                                            >  2:1453716/1‑151 (MQ=255)         tttGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGa                                                                                                                                             <  1:722563/149‑1 (MQ=255)           tGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGAcccc                                                                                                                                         >  1:1083234/1‑151 (MQ=255)            gCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCAAGCTGTTGCAGATGGCGTAACCCCACTGACCccg                                                                                                                                        <  1:1336567/151‑1 (MQ=255)             ccacccacGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGAcccc                                                                                                                                         <  2:4697/149‑1 (MQ=255)             ccacccacGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCccgc                                                                                                                                       >  1:572445/1‑151 (MQ=255)              cacccacGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCccgcc                                                                                                                                      >  1:1161342/1‑151 (MQ=255)                 ccacCCTTCCAGCCCTTCTCCGTCGTGACCCCCCCTTTTTTCCATCTCTCAAACCCATCCCCCGACGTTATCTCCCCAGGCGGGAGGGTCAGGAGACTGAATTT‑GCTACCCCAGCTGTTGCAGAGGGGGTACCCCCCTTGCCCCCGCCGCa                                                                                                                                   <  1:606636/151‑1 (MQ=255)                  cacGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCAc                                                                                                                                  <  1:1378845/151‑1 (MQ=255)                     gCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCtt                                                                                                                               >  1:835390/1‑151 (MQ=255)                         tCAGCATTTCTACGTCGTGACCCCACTTTTCTTTCTTCTCTTCAATCCATCCCCCGACGTTATCTCCCCAGGCCGGAAGGTCAGGAGACTAAATTT‑GCTGACCCAGCTTTTGCAGAGGGCGTACCCCCACTGACCCCGCCGCACCTTTaa                                                                                                                            <  2:594525/150‑1 (MQ=255)                             cccTTCTCCGTCGTGACCCCCCTCTTCTTTCATCTCTTCAATCCATTCCCCGACTTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGCCCCAGCTGTTGCAGAGGGCGTACCCCCACTGCCCCCGCCGCACCTTTaa                                                                                                                            <  1:722937/144‑1 (MQ=255)                             cccTTCTCCGCCGTGCCCCCCCTCTTCTTCCATCTCTCCAACCCATCCCCCGACGTTATCTTCCCAGGCCGGAGGGACAGGAGACTGATTTT‑GCGGCCCCAGCTGTTGCAAAGGGCGTACCCCCTCGGCCCCCGCCGCACCTTTa                                                                                                                             <  1:438162/143‑1 (MQ=255)                              aCTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTAt                                                                                                                      >  1:1159639/1‑151 (MQ=255)                                  cgccgtcgtGACCCCCCTCTTCTTTCACCTCTTCACCCCATTCGCCGGCTTTTTCTCCCCAGGCGGGAGGGTGGGGGGACTGAATTT‑GCTGACCCAGTTTTTGCAGATGGCATACCCCCGCGGGCCCCGCCGCACCTTTAATTTTATGtc                                                                                                                   <  1:98881/147‑1 (MQ=255)                                        cgtGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTc                                                                                                            >  1:49740/1‑151 (MQ=255)                                        cgtGACGCCACTCTTCTTTCATCTCTTCAACCCATCCCCCGCCGTTATCTCCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGCCCCAGCTGTTGCAGATGGCGTACCCCCCCTGCCCCCGCCGCACCTTTAATTTTATGtccttcct                                                                                                             <  2:223477/150‑1 (MQ=255)                                         gtGCCGCCCCTCTTCTTTCATCTCTCCAACCCATCCCCCGACTTTATCTCCCCAGGCGGGAAGGTCAGGAGACTGATTTT‑GCTGCCCCAGCTGTTGCAGATGGCGTACCCCCCCTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTc                                                                                                            <  2:1104297/150‑1 (MQ=255)                                         gtGACGCCCCTCTTTTTTCTTCTCTACAATCCATCCCCCGCCTTTATCTCCCCAGGCCGGAAGGTCGGGAGACTGATTTT‑GCTAACCCTTCTTTTACAGATGGCGTACCCCCCCTGCCCCCGCCGCACCTTTAATTTTATGtcct                                                                                                                 <  1:520818/145‑1 (MQ=255)                                          tGACGCCACTCTTCTTTCATCTCTTCAACCCATTCCCCGACTTTTTCTTCCCAGGCCGGAGGGTCAGGAGACTGAATTT‑GCTGCCCCAGCTTTTGCAGAGGGCGTACCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTc                                                                                                            <  2:252011/149‑1 (MQ=255)                                            aCGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTcaac                                                                                                         >  2:1231184/1‑150 (MQ=255)                                             cccccctctTTTTTCATCTCTTCAACCCATCCCCCGCCGTTATCTCCCCAGGCCGAAGGGCCAGGAGACTGAATTT‑GCTGCCCCAGTTGTTGCAGAGGGCGTACCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTcaac                                                                                                         <  1:661341/144‑1 (MQ=255)                                             cGCCACTTTTCTTTCATCTCTACAATCCATCCCCCGACGTTTTCCCCCCGCGCGGGAAGTCCGGAAGTTTGATTTT‑GCTGCCCCGGTTTTTGCAGAGGGCTTACCCCCTCTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTc                                                                                                            <  1:310391/146‑1 (MQ=255)                                               cccctctTCTTTCATCTGTTCAAGCTATCCACCGAGGTTTTCTCCCCAGGCGGGAAGGACTGAAGAC‑GAATTTGGCTCCCCCAGGTTTTGCAGGCGGGTTACCCCCCCTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTca                                                                                                           <  2:1073075/142‑1 (MQ=255)                                               ccACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAAt                                                                                                      >  2:1120181/1‑150 (MQ=255)                                               ccACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATg                                                                                                     >  2:1094328/1‑151 (MQ=255)                                                cACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGc                                                                                                    >  2:1343731/1‑151 (MQ=255)                                                cACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGc                                                                                                    >  2:489782/1‑151 (MQ=255)                                                cACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGc                                                                                                    >  2:450262/1‑151 (MQ=255)                                                cACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCACACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGc                                                                                                    >  1:268438/1‑151 (MQ=255)                                                     ttttttCATCTCTTCAACCCATCCCCCGACTTTTTCTTCCCAGGCCGGAAGGTCAGGAGACTGATTTT‑GCTGCCCCAGCTTTTGCAGATGGCGTACCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCtt                                                                                                 <  2:926617/146‑1 (MQ=255)                                                        tttCATCTCTTCAATCCATTCCCCGACGTTATCTCCCCGGGCCGGAAGGTCAGGAGACGGATTTG‑CCTCACCCAGTTGTTGCAGATGGCGTACCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCtttt                                                                                               <  2:7116/148‑1 (MQ=255)                                                        tttCACCTTTTCAACCCATCCTCCCACTTTTTCTCCCGAGGCGGGAAGGTCAGGAGACTAATTTT‑GCGGCCCCATCTGTTACAGATGCGGTAACCCCTCTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGcc                                                                                                   <  2:296012/144‑1 (MQ=255)                                                         ttCATCTCTTCAACCCATCCCCCGACTTTATCTCCCCAGGCGGGAAGGTCAGGAGACTGAATTT‑GCTGCCCCAGCTGTTGCAGATGGCGTACCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCtttttt                                                                                             <  2:27526/149‑1 (MQ=255)                                                           cATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATcc                                                                                         >  1:689922/1‑151 (MQ=255)                                                            aTCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCt                                                                                        >  1:273498/1‑151 (MQ=255)                                                             tctcTTCAATCCATTCCCCGACGTTATCTCCCCAGGCCGGAAGGTCAGGAGACTAATTTT‑CCTGCCCCGGCTGTTGCAGATGGCGTACCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATcc                                                                                         <  2:408885/149‑1 (MQ=255)                                                              ctctTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTgc                                                                                      >  1:450577/1‑151 (MQ=255)                                                              ctctTCAACCCATTCCCCGACTTTATCTCCCCAGGCCGGAAGGTCAGGAGACTAAATTT‑GCTGCCCCAGCTGTTGAAGAGGGCGTACCCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATcc                                                                                         <  2:1335989/148‑1 (MQ=255)                                                               tttacattCCATTCCCCGACTTTATCTCCCCAGGCCGCAAGGTCAGAAGTCTGAATTT‑GCGCACCCGTTTTTTCCAGTGGGCATACCCCCCCTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTg                                                                                       <  1:1188469/142‑1 (MQ=255)                                                               tctTAAACCCATCCCCCGACTTTATTTTCCCAGGCCGAAAGGTCGGGAGACGAAATTT‑GCTGACCCAGTTGTTGCAGATGGCGTACCCCCCCTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCttttt                                                                                              <  2:1332282/142‑1 (MQ=255)                                                                 tcaaacccttcccccGACTTTATCTCCCCAGGCCGAAAGGTCAGGAGACTGATTTT‑GCTCCCCCAGTTTTTGCAGATGGCGTACCCCCCCGGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATcc                                                                                         <  1:1379382/132‑1 (MQ=255)                                                                  tCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTgcgc                                                                                    >  2:258998/1‑149 (MQ=255)                                                                    aacccATCCCCCGCCTTTATCTTCCCGGGCCGGAAGGTCAGGAGACTGATTTT‑GCTGCCCCAGTTGTTGCAGATGGCGTACCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGt                                                                                 <  1:1222579/147‑1 (MQ=255)                                                                    aacccATCCCCCGACTTTATCTCCCCAGGCCGGAAGGTCAGGAGACTAAATTT‑GCTGACCCAGCTGTTGCAGATGGCGAACCCCCCCTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCg                                                                                  <  2:1382234/146‑1 (MQ=255)                                                                    aacccATCCCCCGACGTTATCTCCCCAGGCCGGAAGGTCAGGAGACTGATTTT‑GCTGCCCCAGCTTTTGCAGAGGGCGTACCCCCCCTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGt                                                                                 <  2:204447/147‑1 (MQ=255)                                                                    aaTCCATCCCCCGCCTTTTTCTCCCCAGGCGGGAAGGTCAGGAGACTGAATTT‑GCTGCCCAGGCTGTTGCAGAGGGCGTACCCCCCCTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTgcg                                                                                     <  2:221744/146‑1 (MQ=255)                                                                       ccATTCCCCGCCTTTTTCTCCCCAGGCCGAAAGGGCAGGAGACTGAATTT‑GCGGCCCCGGCTTTTGCAGAGGGCGTACCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAg                                                                              <  2:1235636/150‑1 (MQ=255)                                                                       ccATCCCCCGACTTTATCTTCCCAGGCGGGAAGGTAAGGAGACTAATTTT‑GCTGCCCCAGTTGTTGCAGAGGGCGTACCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAg                                                                              <  1:38811/150‑1 (MQ=255)                                                                       ccATCCCCCGACTTTATCTCCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGCCCCAGTTTTTGCAGATGGCGTACCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCa                                                                               <  2:283212/149‑1 (MQ=255)                                                                         aTTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGAtt                                                                           >  2:1043000/1‑151 (MQ=255)                                                                         aTTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGAtt                                                                           >  2:291784/1‑151 (MQ=255)                                                                          ttCCCCGCCGTTATCTCCCCAGGCGGGAAGGTCAGGACACTAAATTT‑GCTGCCCCAGCTGTTGCAGATGGCGTACCCCCCCTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGAtt                                                                           <  2:555209/150‑1 (MQ=255)                                                                           cccccGACGTTATCTCCCCGGGCCGGAAGGACAGGAGACTAATTTT‑GCTGCCCCAGTTGTTGAAGATGGCGTACCCCCCCTCCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTc                                                                          <  1:923123/147‑1 (MQ=255)                                                                            cccccactttATCTCCCCAGGCGGGAGGGTCAGGAGACTGATTTT‑CCTGCCCCAGTTGTTGAAGATGGCGTACCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGAt                                                                            <  1:79478/139‑1 (MQ=255)                                                                            ccccGACTTTATCTCCCCAGGCCGGAAGGTCAGGAGACTGATTTT‑GCTGACCCAGTTGTTGCAGGTGGCGTACCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGAtt                                                                           <  1:396016/146‑1 (MQ=255)                                                                               cgccGTTATCTTCCCAGGCCGGAGGGTCAGGAGACTAAATTT‑GCTGCCCCAGCTGTTGCAGAGGGCAAAACCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCa                                                                               <  1:277955/138‑1 (MQ=255)                                                                                  cGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTcc                                                                    >  2:250266/1‑149 (MQ=255)                                                                                   gTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGc                                                                 >  2:765679/1‑151 (MQ=255)                                                                                      aTCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACg                                                              >  2:485954/1‑151 (MQ=255)                                                                                         ttCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTg                                                           >  1:1034414/1‑151 (MQ=255)                                                                                          tCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTg                                                           >  2:419822/1‑150 (MQ=255)                                                                                           cccAGGCGGGAAGTCCAGAAGATTAATTTT‑GCTCCCCCAGTTGTTGCAGAGGGCAAACCCCCCCTCCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCt                                                            <  1:129992/148‑1 (MQ=255)                                                                                           cccAGGCCGGAAGGTCAGGAGACTAAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTACCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGAc                                                         <  2:612909/151‑1 (MQ=255)                                                                                            ccAGCCCGGAGGCTCGGGAAACTAATTTT‑GCTGCCCCATTTTTTGCAGATGGCTTACCCCCCCTCCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTc                                                                     <  1:483223/138‑1 (MQ=255)                                                                                               ggCCGAAGGGGCAGGAGACTAAATTG‑GCTGACCCAGTTTTTGCAGATGGCTTACCCCCCCTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACAt                                                       <  1:451895/149‑1 (MQ=255)                                                                                                  cGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGccc                                                  >  2:602046/1‑151 (MQ=255)                                                                                                   ggAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGAGGGCGTACCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGccc                                                  <  2:684840/150‑1 (MQ=255)                                                                                                       ggTCAGGAGACTAATTTT‑GCTGCCCCAGTTGTTGCAGATGGCTTACCCCCCCTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGcat                                             <  2:264128/151‑1 (MQ=255)                                                                                                           aGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCatcatc                                         >  1:44328/1‑151 (MQ=255)                                                                                                            ggAGCCTGATTTT‑GCTGCCCCTGCTTTTGCAGAGGGGGTACCCCCCCTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCatcatc                                         <  1:1138518/150‑1 (MQ=255)                                                                                                             gagaCTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCAtctt                                       >  2:332794/1‑151 (MQ=255)                                                                                                              agaCTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCAtcttc                                      >  2:51265/1‑151 (MQ=255)                                                                                                                 cTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTtctc                                    >  1:1022304/1‑150 (MQ=255)                                                                                                                 cTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTtctc                                    >  1:861421/1‑150 (MQ=255)                                                                                                                  tGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCa                                   >  1:688135/1‑150 (MQ=255)                                                                                                                   gatttt‑CCTGCCCCGGGTTTTGCGGATGGCCTACCCCCACCGTCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCaa                                  <  1:13168/147‑1 (MQ=255)                                                                                                                     aTTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAac                                >  2:522029/1‑150 (MQ=255)                                                                                                                     aTTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAac                                >  1:1048236/1‑150 (MQ=255)                                                                                                                      ttt‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAacac                              >  2:635037/1‑151 (MQ=255)                                                                                                                        t‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAacac                              >  1:147214/1‑149 (MQ=255)                                                                                                                            tGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCt                          >  1:724942/1‑150 (MQ=255)                                                                                                                               cccAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAAcc                      >  2:507138/1‑151 (MQ=255)                                                                                                                                ccAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAAccc                     <  1:671609/151‑1 (MQ=255)                                                                                                                                  aGCTGTTGCAGAGGGCGTACCCCCACTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGt                   <  2:717431/151‑1 (MQ=255)                                                                                                                                      gTTGCAGGTGGCGAACCCCCACGGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTc                  <  1:868023/148‑1 (MQ=255)                                                                                                                                         gcggagggCGAACCCCCCCTGCCCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGAt            <  2:1274896/145‑1 (MQ=255)                                                                                                                                           aGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATc           >  1:133243/1‑150 (MQ=255)                                                                                                                                           aGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATc           >  2:532696/1‑150 (MQ=255)                                                                                                                                             aTGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGc        >  1:718869/1‑151 (MQ=255)                                                                                                                                              tGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCt       >  2:392066/1‑151 (MQ=255)                                                                                                                                                   tAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGt  >  2:1085457/1‑151 (MQ=255)                                                                                                                                                   tAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGt  >  2:414505/1‑151 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCCACTCTTCTTTCATCTCTTCAATCCATTCACCGACGTTATCTTCCCAGGCCGGAAGGTCAGGAGACTGAATTT‑GCTGACCCAGCTGTTGCAGATGGCGTAACCCCACTGACCCCGCCGCACCTTTAATTTTATGTCCTTCCTCAACAATGCCTTTTTTATCCTGCGCCGTCAGATTCGACTCCAGCACGCTGACATAGCCCGGCATCATCTTCTCAAACACCGCTAACCCGTCGGTGATCAGCTTCGGT  >  NC_000913/3350697‑3350992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑