BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	562,667	T→C	F111S (TTC→TCC)	sfmH →	FimA homolog, function unknown

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	562,667	0	T	C	100.0%	415.7 / NA	106	F111S (TTC→TCC)	sfmH	FimA homolog, function unknown
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (50/56); total (50/56)

Only 100 of 106 total aligned reads displayed.

ACCCGGTACGCTGGTGAATTATACATACCGTAGTTATGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTTCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTTTATTAACATGGTGGAGATCCCCAGACAGGTGATGT  >  NC_000913/562521‑562813

aCCCGGTACGCTGGTGAATTATACATACCGTAGTTATGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCcccc                                                                                                                                                >  1:624460/1‑151 (MQ=255)

     gTACGCTGGTGAATTATACATACCGTAGTTATGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGc                                                                                                                                            >  1:492309/1‑150 (MQ=255)

       aCGCTGGTGAATTATACATACCGTAGTTATGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCaaa                                                                                                                                         <  1:1351762/151‑1 (MQ=255)

        cGCTGGTGAATTATACATACCGTAGTTATGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCaaa                                                                                                                                         >  1:1146118/1‑150 (MQ=255)

         gCTGGTGAATTATACATACCGTAGTTATGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTGGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAAt                                                                                                                                       <  2:461505/151‑1 (MQ=255)

            ggTGAATTATACATACCGTAGTTATGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAAtt                                                                                                                                      <  2:1062558/149‑1 (MQ=255)

               gAATTATACATACCGTAGTTATGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATAtt                                                                                                                                 <  2:655009/151‑1 (MQ=255)

                aaTTATACATACCGTAGTTATGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTc                                                                                                                                <  1:819450/151‑1 (MQ=255)

                   tataCATACCGTAGTTATGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCgg                                                                                                                              <  1:1443102/150‑1 (MQ=255)

                        atacCGTAGTTATGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATggg                                                                                                                         >  2:113988/1‑150 (MQ=255)

                         tacCGTAGTTATGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGa                                                                                                                        >  2:292768/1‑150 (MQ=255)

                         tacCGTAGTTATGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGa                                                                                                                        >  2:905670/1‑150 (MQ=255)

                          acCGTAGTTATGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGaa                                                                                                                       <  2:374480/150‑1 (MQ=255)

                            cGTAGTTATGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAAc                                                                                                                      >  2:656330/1‑149 (MQ=255)

                               aGTTATGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAAc                                                                                                                      >  1:840355/1‑146 (MQ=255)

                                 ttATGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCt                                                                                                               >  1:569844/1‑151 (MQ=255)

                                   aTGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTa                                                                                                              >  1:370092/1‑150 (MQ=255)

                                   aTGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTa                                                                                                              >  1:358490/1‑150 (MQ=255)

                                   aTGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTa                                                                                                              >  2:663084/1‑150 (MQ=255)

                                     gTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAAc                                                                                                            <  1:107967/150‑1 (MQ=255)

                                             cTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCa                                                                                                    >  1:1248750/1‑150 (MQ=255)

                                               ttATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCaa                                                                                                   <  2:1360338/149‑1 (MQ=255)

                                                tATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCaaaa                                                                                                 <  2:803328/150‑1 (MQ=255)

                                                 aTTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAAcc                                                                                               <  1:1072064/151‑1 (MQ=255)

                                                  ttGCTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCt                                                                                              >  1:399219/1‑151 (MQ=255)

                                                    gTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCtt                                                                                             <  2:981165/150‑1 (MQ=255)

                                                    gTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTc                                                                                            >  1:1109965/1‑151 (MQ=255)

                                                    gTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTc                                                                                            >  2:404269/1‑151 (MQ=255)

                                                    gTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTc                                                                                            >  2:43638/1‑151 (MQ=255)

                                                      tCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTcc                                                                                           >  1:797976/1‑150 (MQ=255)

                                                       cAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCAt                                                                                         <  1:990538/151‑1 (MQ=255)

                                                         ggAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTc                                                                                       <  2:116899/151‑1 (MQ=255)

                                                          gAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCg                                                                                      >  2:952482/1‑151 (MQ=255)

                                                           aaaCTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCgg                                                                                     >  2:822118/1‑151 (MQ=255)

                                                             aCTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCgggg                                                                                   <  2:1222264/151‑1 (MQ=255)

                                                                aTCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGt                                                                                  <  2:1224394/149‑1 (MQ=255)

                                                                aTCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTg                                                                                 <  2:1167293/150‑1 (MQ=255)

                                                                 tCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGAt                                                                               >  1:1437500/1‑151 (MQ=255)

                                                                  cGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGAt                                                                               <  1:844370/150‑1 (MQ=255)

                                                                   gATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATgg                                                                             >  2:900241/1‑151 (MQ=255)

                                                                    aTAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATgg                                                                             >  1:852496/1‑150 (MQ=255)

                                                                    aTAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGa                                                                            <  1:487704/151‑1 (MQ=255)

                                                                      aaTTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGAtt                                                                          >  2:895928/1‑151 (MQ=255)

                                                                      aaTTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCACCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGAtt                                                                          >  2:1378890/1‑151 (MQ=255)

                                                                         tataAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATtctc                                                                       >  2:249648/1‑151 (MQ=255)

                                                                         tataAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATtct                                                                        <  1:1454398/150‑1 (MQ=255)

                                                                          ataAGTATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCg                                                                      <  1:297768/151‑1 (MQ=255)

                                                                            aaaTATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGtt                                                                    <  1:983216/151‑1 (MQ=255)

                                                                            aaaTATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGt                                                                     <  1:69160/150‑1 (MQ=255)

                                                                                atatGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAat                                                                <  2:184570/151‑1 (MQ=255)

                                                                                atatGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAat                                                                <  2:895131/151‑1 (MQ=255)

                                                                                  atGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAatat                                                              <  1:1442725/151‑1 (MQ=255)

                                                                                    gCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATAttt                                                            <  1:230971/151‑1 (MQ=255)

                                                                                    gCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATAtt                                                             <  1:1001543/150‑1 (MQ=255)

                                                                                     cAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTc                                                           >  2:848272/1‑151 (MQ=255)

                                                                                         tACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGttt                                                       >  1:997065/1‑151 (MQ=255)

                                                                                          aCATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAATCCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGtt                                                        <  2:951573/149‑1 (MQ=255)

                                                                                          aCATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGttt                                                       <  2:714833/150‑1 (MQ=255)

                                                                                          aCATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGttt                                                       <  1:110126/150‑1 (MQ=255)

                                                                                          aCATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGttt                                                       >  2:1420042/1‑150 (MQ=255)

                                                                                          aCATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTa                                                      <  2:1182107/151‑1 (MQ=255)

                                                                                               aTTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGt                                                 <  1:737310/151‑1 (MQ=255)

                                                                                                 tATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGtt                                                >  1:1010890/1‑150 (MQ=255)

                                                                                                  aTCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTa                                               <  1:726318/150‑1 (MQ=255)

                                                                                                    cTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTAGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTc                                            >  1:1109688/1‑151 (MQ=255)

                                                                                                      aTTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTAtt                                             <  1:159273/148‑1 (MQ=255)

                                                                                                      aTTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTc                                            <  2:369015/149‑1 (MQ=255)

                                                                                                      aTTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGt                                          >  1:1322435/1‑151 (MQ=255)

                                                                                                       ttAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTc                                         >  1:1106181/1‑151 (MQ=255)

                                                                                                          ggTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCt                                      <  2:990026/151‑1 (MQ=255)

                                                                                                           gTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCtt                                     <  2:519078/151‑1 (MQ=255)

                                                                                                             gCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCttt                                    <  1:598127/150‑1 (MQ=255)

                                                                                                             gCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTtta                                   <  2:624476/151‑1 (MQ=255)

                                                                                                              cGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTttat                                  <  1:1191739/151‑1 (MQ=255)

                                                                                                              cGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTttat                                  >  2:745607/1‑151 (MQ=255)

                                                                                                              cGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTttat                                  <  1:895905/151‑1 (MQ=255)

                                                                                                               gATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTttatt                                 >  1:139881/1‑151 (MQ=255)

                                                                                                               gATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTttatt                                 <  1:433580/151‑1 (MQ=255)

                                                                                                               gATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTttatt                                 <  2:610087/151‑1 (MQ=255)

                                                                                                               gATGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTttatt                                 <  2:1048592/151‑1 (MQ=255)

                                                                                                                aTGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTttatta                                <  2:302938/151‑1 (MQ=255)

                                                                                                                aTGAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTttatta                                <  1:477297/151‑1 (MQ=255)

                                                                                                                  gAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTTTATTaa                               <  1:1380304/150‑1 (MQ=255)

                                                                                                                  gAGTCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTTTATTaa                               <  1:1240267/150‑1 (MQ=255)

                                                                                                                     tCTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTTTATTAACAtg                           >  1:2849/1‑151 (MQ=255)

                                                                                                                      cTGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTTTATTAACAtgg                          >  2:1010469/1‑151 (MQ=255)

                                                                                                                       tGGTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCACAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTTTATTAACAtggt                         >  2:1258220/1‑151 (MQ=255)

                                                                                                                        ggTTGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTTTATTAACAtggtg                        <  2:827148/151‑1 (MQ=255)

                                                                                                                           tGATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTTTATTAACAtggtgg                       >  1:991283/1‑149 (MQ=255)

                                                                                                                            gATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTTTATTAACATGGTGgaga                    <  2:252055/151‑1 (MQ=255)

                                                                                                                            gATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTTTATTAACATGGTGgag                     <  2:167193/150‑1 (MQ=255)

                                                                                                                            gATAGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCATTTAAAGGTTATTCGTCCCTTTATTAACAtggtgg                       >  2:540632/1‑148 (MQ=255)

                                                                                                                               aGTGTGATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTTTATTAACATGGTGGAGATcc                 >  1:1044094/1‑151 (MQ=255)

                                                                                                                                    gATGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTTTATTAACATGGTGGAGATCCCCAGa            <  2:858453/151‑1 (MQ=255)

                                                                                                                                     aTGGATATTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTTTATTAACATGGTGGAGATCCCCAGAc           <  2:1437203/151‑1 (MQ=255)

                                                                                                                                           atTCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTTTATTAACATGGTGGAGATCCCCAGACAGGTg      >  2:309376/1‑150 (MQ=255)

                                                                                                                                            ttCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTTTATTAACATGGTGGAGATCCCCAGACAGGTGa     <  2:1377224/150‑1 (MQ=255)

                                                                                                                                            ttCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTTTATTAACATGGTGGAGATCCCCAGACAGGTGAt    >  1:124315/1‑151 (MQ=255)

                                                                                                                                            ttCAGTCCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTTTATTAACATGGTGGAGATCCCCAGACAGGTGAt    >  1:1134765/1‑151 (MQ=255)

                                                                                                                                              cAGTCCCCCCAGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTTTATTAACATGGTGGAGATCCCCAGACAGGTGATGt  >  2:787503/1‑151 (MQ=255)

ACCCGGTACGCTGGTGAATTATACATACCGTAGTTATGTCACCAACTTTATTGTTCAGGAAACTATCGATAATTATAAATATATGCAATTACATGATTATCTATTAGGTGCGATGAGTCTGGTTGATAGTGTGATGGATATTCAGTTCCCCCCGCAAAATTATATTCGGATGGGAACAGATCCTAACGTTTCGCAAAACCTTCCATTCGGGGTGATGGATTCTCGTTTAATATTTCGTTTAAAGGTTATTCGTCCCTTTATTAACATGGTGGAGATCCCCAGACAGGTGATGT  >  NC_000913/562521‑562813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`