Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006584 1,464,821 A→G intergenic (+486/‑118) LY180_06955 → / → LY180_06960 hypothetical protein/regulatory protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0065841,464,8210AG98.4% 213.0 / NA 62intergenic (+486/‑118)LY180_06955/LY180_06960hypothetical protein/regulatory protein
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base G (36/25);  total (36/26)
Fisher's exact test for biased strand distribution p-value = 4.19e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

GAGCGGATGGTGACTGGTTGTTGTGTTCCATTTCTACAGAACAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCAGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAACCGGCCAGACGGAGGTCGCTGTCTTCGTAGACTACGAA  >  CP006584/1464527‑1465109
                                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                                
gagCGGATGGTGACTGGTTGTTGTGTTCCATTTCTACAGAACAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTACGTAGAATCGCTGCGGGGGCTTGAGGCTATTCGTCTCGGGc                                                                                                                                                                                                                                                                                               >  2:350761/1‑298 (MQ=255)
    ggATGGTGACTGGTTGTTGTGTTCCATTTCTACAGAACAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGa                                                                                                                                                                                                                                                                                           >  1:98493/1‑298 (MQ=255)
       tGGTGACTGGTTGTTGTGTTCCATTTCTACAGAACAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCCGGTGCTTGAGGCTAACTGTCCCGGGCATGaaac                                                                                                                                                                                                                                                                                        >  2:203137/1‑296 (MQ=255)
                            cATTTCTACAGAACAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTAACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTGATGGATCGCCTTTCTGATTGATTATCTATTGGCGTGGTTACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGTCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGaaca                                                                                                                                                                                                                                                                   >  1:289332/1‑296 (MQ=255)
                                    cAGAACAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTAGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGt                                                                                                                                                                                                                                                           <  1:501273/298‑1 (MQ=255)
                                           aaaaCACAGAAACTTTACCCAATAGTTGCATTGAATCACTGCAGAGAATCCCTCATATTTATCATGACTTGGGTACGTCCAATACAGGGGGTTGTCGTGCTGGTTCTCAAGTGTGAGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACAtt                                                                                                                                                                                                                                                    <  2:21785/298‑1 (MQ=255)
                                             aTCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGAAGGGGGTTAAGTAGAATTTCTGCGGGTGCTTGAGGCTACCGGTCTCGGGCAGGAACACCTAACGGCAGATAGGAAAAAGCCCAGGTTTAAATTag                                                                                                                                                                                                                                                  >  2:383906/1‑297 (MQ=255)
                                                               aaTAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATCGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCtt                                                                                                                                                                                                                                <  1:350761/298‑1 (MQ=255)
                                                                 tAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGCTCGCCTTTCTGATTGATTTTATCTTGGCGCGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTTTCTGTCTCGGGCATGAACACCACAAGGCAGGAAGAGAAAACCCCCAGTCACATTTTCGCGTCCGGAAAGACACTTaa                                                                                                                                                                                                                              >  2:422930/1‑298 (MQ=255)
                                                                             agcACTGACGATAAATGCTGCTATTGATCAGGTCTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTATCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTGCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAg                                                                                                                                                                                                                  <  2:805458/296‑1 (MQ=38)
                                                                                aCTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGcc                                                                                                                                                                                                               >  1:193090/1‑298 (MQ=255)
                                                                                   gACGAGACATCCTCATATTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCatat                                                                                                                                                                                                           >  1:574720/1‑298 (MQ=255)
                                                                                     cGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGGGAAAAGCCCCAGTTAACATTACGCGTACGGCCAGACGCGTAACATTAATCTAAGGCCatatt                                                                                                                                                                                                          >  2:270762/1‑297 (MQ=255)
                                                                                     cGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATc                                                                                                                                                                                                          <  1:736046/298‑1 (MQ=255)
                                                                                                 atatTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGAAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACAt                                                                                                                                                                                              <  1:65427/298‑1 (MQ=255)
                                                                                                   atTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATag                                                                                                                                                                                            >  2:774711/1‑298 (MQ=255)
                                                                                                    tttATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATaga                                                                                                                                                                                           >  1:18292/1‑298 (MQ=255)
                                                                                                        tCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGAtt                                                                                                                                                                                       <  2:789757/298‑1 (MQ=255)
                                                                                                             aCTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCct                                                                                                                                                                                  <  1:113531/298‑1 (MQ=255)
                                                                                                              cTGGTGTGCGTCCAATACGGGGGGTTTTCGTGCTGGTTCTCAATTGTGGGCTAGTTATTGCGGCTTTAATGGCAATTTATTGTTGTGCTGTTGTTCTTAGGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGGGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCctc                                                                                                                                                                                 <  2:18292/298‑1 (MQ=37)
                                                                                                              cTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCctc                                                                                                                                                                                 <  1:710546/298‑1 (MQ=255)
                                                                                                                 gtgtACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTa                                                                                                                                                                              >  1:153583/1‑298 (MQ=255)
                                                                                                                          cAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGaa                                                                                                                                                                     >  1:458918/1‑298 (MQ=255)
                                                                                                                          cAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGaa                                                                                                                                                                     >  1:550215/1‑298 (MQ=255)
                                                                                                                             tgacagaggTGGTTGTGGTGTTTCTCACATGTGCTCTATTTATGGCGTATGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATTGTTCGCCTTTCTTATTGATTTTATGTTGGCGAGGTGACGGTGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAATGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATAGCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAgg                                                                                                                                                                  <  2:384500/293‑1 (MQ=25)
                                                                                                                             tACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAgg                                                                                                                                                                  >  1:253093/1‑298 (MQ=255)
                                                                                                                                   aggTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGga                                                                                                                                                            >  1:109365/1‑298 (MQ=255)
                                                                                                                                      ttGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGaa                                                                                                                                                         <  1:401793/298‑1 (MQ=255)
                                                                                                                                            tGCTGGTTCGGAAATGTGCGCTAGCTATTGGGGCTGTATTGCCAATTTATTGTCTTGCTGTTTTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGc                                                                                                                                                   <  1:35917/298‑1 (MQ=255)
                                                                                                                                                   tctcAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGGACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAag                                                                                                                                            >  1:64418/1‑298 (MQ=255)
                                                                                                                                                    ctcAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAagc                                                                                                                                           >  1:181226/1‑298 (MQ=255)
                                                                                                                                                     tcAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAagca                                                                                                                                          >  1:390013/1‑298 (MQ=255)
                                                                                                                                                       aaaTGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAcgcagc                                                                                                                                        >  1:404351/1‑298 (MQ=255)
                                                                                                                                                             gcgcTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAgg                                                                                                                                  >  1:158760/1‑298 (MQ=255)
                                                                                                                                                                 tagctaTTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGACAAGCCCCAGTTAACATTACTCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACCTAGAGATTAGCCTATTATGTGCCGAAAGGCAAGGCACAGCAGGCTATGAAGCACCAAAAGGCGag                                                                                                                              >  2:651747/1‑297 (MQ=255)
                                                                                                                                                                       ttGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAAt                                                                                                                        >  1:693598/1‑298 (MQ=255)
                                                                                                                                                                                    ggCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCAATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGCAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGAAGTTAATCGCCCTGATctga                                                                                                           >  2:716334/1‑295 (MQ=255)
                                                                                                                                                                                                   tgttgttgtTTTTATGGAGTGCCTTTTTGATTGTTTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATGGCTGCGGGTGCTTGGGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTc                                                                                            <  2:378256/295‑1 (MQ=255)
                                                                                                                                                                                                      tgttgtTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCAtt                                                                                         >  1:635974/1‑298 (MQ=255)
                                                                                                                                                                                                       gttgttCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATtg                                                                                        >  1:793093/1‑298 (MQ=255)
                                                                                                                                                                                                        ttgttCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCt                                                                                                                                                  <  1:713053/239‑1 (MQ=255)
                                                                                                                                                                                                        ttgttCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCt                                                                                                                                                  >  2:713053/1‑239 (MQ=255)
                                                                                                                                                                                                          gttCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCGGATCGTCATCTGTTTACCCGGCATtgtta                                                                                     >  2:743739/1‑296 (MQ=255)
                                                                                                                                                                                                                 tGGATGGCTGTTCGGATTGATTTTAGTTGGGCGAGTGGACGGGGGTTAAGGAGAATTGGGGCGGGGGCTGGAGGCTATCTGTTGAGGGGATGAACACAAAAATGCATCTAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACTCTTAACATTAATCTGAGGCCATAGCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAATGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTTACGGCACt                                                                              <  2:508179/298‑1 (MQ=37)
                                                                                                                                                                                                                          ttttTGTTTGTTTTTATGTTGGCGGGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAg                                                                     <  2:158760/298‑1 (MQ=255)
                                                                                                                                                                                                                              tgattgatTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGaaa                                                                 <  1:203137/298‑1 (MQ=255)
                                                                                                                                                                                                                              tgattgatTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGaaa                                                                 >  1:716338/1‑298 (MQ=255)
                                                                                                                                                                                                                               gattgattTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCATGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAAGCGCCCTGATCGTCATCTGTTTAACCGTAATTGTGACGGCACTGGTAACGAGGAAAg                                                                >  1:745067/1‑298 (MQ=255)
                                                                                                                                                                                                                                 ttgattTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGAc                                                              >  1:162301/1‑298 (MQ=255)
                                                                                                                                                                                                                                     ttttATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACctct                                                          <  1:383906/298‑1 (MQ=255)
                                                                                                                                                                                                                                          tatTGGCGAGGTGACGGGGGATAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCCGCCAAAGGCGATGTTAATCGCCCTGAACGCCATCTGTTTAACCGTCATTGTGACGGAACTGGGAACGAGGAAAGACCTCTgaggg                                                     >  2:563813/1‑294 (MQ=255)
                                                                                                                                                                                                                                           atTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAgg                                                    <  1:249959/298‑1 (MQ=255)
                                                                                                                                                                                                                                                      gACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGa                                         >  1:472826/1‑298 (MQ=255)
                                                                                                                                                                                                                                                        cGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAAc                                       <  1:323943/298‑1 (MQ=255)
                                                                                                                                                                                                                                                              ttAATTAGAATTGCTGCGGGTGCTTGAGGGTATCTGTCTCAGACATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACGTTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAACCGGCCa                                 <  2:574720/298‑1 (MQ=255)
                                                                                                                                                                                                                                                                aaggataaTTGCTGGGGGTGCTTGAGGGTATGTGTCTCGGGCATGAACCACAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACCAGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAACCGGCCAGa                               <  2:546907/292‑1 (MQ=37)
                                                                                                                                                                                                                                                                aaGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGACCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAAACCTCTGCGAGGTACGAATCCGAACCGGCCAgc                               >  2:675600/1‑297 (MQ=255)
                                                                                                                                                                                                                                                                  gTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAACCGGCCAGACg                             >  1:726512/1‑298 (MQ=255)
                                                                                                                                                                                                                                                                                      tggggcagtCTGTCTCGGGCATGAACACCAAAAAGAAGAGAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGGTTAACATTAATCTGAGGCCATATCTATGCGACACATAGGGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAACCGGCCAGACGGAGGTCGCTGTCTTCGTAGa         <  2:13361/290‑1 (MQ=255)
                                                                                                                                                                                                                                                                                         ggctagtggTCTCGGGAATCAACACCAAAAGGCAGATAGAGAAAAGGCCAAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAACCGGCCAGACGGAGGTCGCTGTCTTCGTAGACTa      <  2:756391/290‑1 (MQ=255)
                                                                                                                                                                                                                                                                                          gCTATTTGTCTCGGGCATGAAAACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGAAGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAACCGGCCAGACGGAGGTCGCTGTCTTCGTAGACTAc     <  1:187321/298‑1 (MQ=255)
                                                                                                                                                                                                                                                                                             aTCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAACCGGCCAGACGGAGGTCGCTGTCTTCGTAGACTACGaa  >  1:406417/1‑298 (MQ=255)
                                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                                
GAGCGGATGGTGACTGGTTGTTGTGTTCCATTTCTACAGAACAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCAGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAACCGGCCAGACGGAGGTCGCTGTCTTCGTAGACTACGAA  >  CP006584/1464527‑1465109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: