| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006584 | 2,483,647 | G→A | P236S (CCG→TCG) | LY180_11800 ← | NADH:ubiquinone oxidoreductase subunit M |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006584 | 2,483,647 | 0 | G | A | 98.5% | 232.1 / NA | 66 | P236S (CCG→TCG) | LY180_11800 | NADH:ubiquinone oxidoreductase subunit M |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (34/31); minor base C (1/0); total (35/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 | |||||||||||
CCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGGCATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACAGTGCGATCAGGAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAG > CP006584/2483355‑2483941 | cgggTGTAGCAAGCAATACGCCCGAAGCCCAGTGGGGAAAACGAGGTGGAGGAGAGCAAACGTTGGAGTTCGGTCGGGGCGACAGCCACCACCGCACCGTAGAAGATGCCGATACCCCCCAGACACAAAGCGATTGGCGCAAACGCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACAttt < 2:291982/296‑1 (MQ=255) cAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCCAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGAAGTTTTCCGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGGGCCCGAGAGTGCGCACCCGGTCGCCAGCCACGCGCCGGCACCACCGCCACTTTGCCAGCGAAggg > 2:427916/1‑297 (MQ=255) aGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGcc > 1:292392/1‑298 (MQ=255) gCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACCGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGAATCCGGCAGCCAGCCATGCAGCGGAACCACCGAACTTTTGACTCCGAAGGCGATGAAGAAGccc > 2:153348/1‑298 (MQ=255) cccATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCa < 1:670210/298‑1 (MQ=255) ccATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAg > 1:788658/1‑298 (MQ=255) tgGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCAATa > 1:20332/1‑298 (MQ=255) ggagagcggggTGTGGGATATCAGAGGTGTCATATGGGTCCGGGCGAAAGCCATCCAGATACCGGAGAGGATGCCGCTAACCCCCAGCCACCTAGCGATGGGCGCAAACACGGACGATGCGTTCGGGAACAGCGGCAGGGAGGAACGCAGCAAACCGTAAGCGGCAGTGTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCAGCCGGTAGCCAGCCATGCAGCGGAACCACCGACAGTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAAc < 2:499315/289‑1 (MQ=255) agaacaggggTGTACGCGATCAGACTGTTAGGACCGGGCTGGGCGAAAGCCATCCCCACACCGTCTGAGATGCCGATAACCCCCAGCCACATAGCGATGGGCGCAAACTCTGCCGATGCGGTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACa < 2:15222/290‑1 (MQ=255) aaaCCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAg < 1:603471/298‑1 (MQ=255) aCCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGt > 1:82139/1‑298 (MQ=255) gtgggggATCAGGCGTTTGATATCGGTCGGGGGGAAAGCCACCCACGAACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACGCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCcaca < 2:804873/292‑1 (MQ=255) gATCAGACGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTg > 1:509997/1‑298 (MQ=255) cGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTg < 2:292392/298‑1 (MQ=255) tttGATATCGGTCTTGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGc < 1:132284/298‑1 (MQ=255) gATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTa < 1:779042/298‑1 (MQ=255) cGGTCTGGGCGCAGGCCCTCCCGGCCCCGTAGAGGATACCGATGACCCCCAGCCCCATGGATGTGGTCGCAAACTCTGCCGATGGGTTCGGGAACAGAGGCAGGGGTGAAAGCGGCAAACCGTAAGAGGCAGTTTTCAGCAAGATCCACGCGAGGTCAACGGAGCCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTCACAGGTATTCCACACCACTGGACATTGGCGTATTcag < 2:788658/298‑1 (MQ=255) gTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTcagca < 1:748889/298‑1 (MQ=255) aaGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATa > 1:159261/1‑298 (MQ=255) aGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAg < 1:457340/298‑1 (MQ=255) tCCAGGCACCGCAGAAGATGCCGCTAACCACCAGCAGCAGAGCGATTGGCGCACACTCTGCGCATGCGTGCGGGAACCTCGGGATGGAGAAACGCAGCAAACCGTAAGCGGCAGCTTGCAGCAAGAACCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCCTCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGaa < 2:367141/298‑1 (MQ=255) cACGCACCAGACAAGATGCCGATAACCCCCAGCCACATGGCGATTGGCGCAAACTCTGCCGATGCGTGCGGGAACAGAGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAgg < 2:99722/298‑1 (MQ=255) gaagaTGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCg > 1:383252/1‑298 (MQ=255) agaTGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCAGCGAGGTCAACGGACCCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGAAGGGGAACCACCGAAATTTTGACTGCGAGGGCGATGAAGAAGCCAAGCATTAACAGGAATTCAACACAACTGGACATTGGCGTATTCAGAAGCTCTTAATAGTTGACGGTCCAGAAGCGGGt > 1:681587/1‑298 (MQ=255) cGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCAATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCAAGCATTAACAGTTATTCCACACAAATGGACATCGGCGTATTCAGCCGCTCTTCATAGTTGCAGGTCGAGCCGCCGGGCCCAtt > 2:795295/1‑298 (MQ=255) aTAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGt < 1:335001/298‑1 (MQ=255) aTAACCCCCAGCCACAGAGCGATGGGCGCAAACGCTGCCGAGGCGTGCGGGAACGGCGGCAGGGAGAAACGCAGCAAACCGTAGGCGGCAGTTGTCAGCAAGGTCCCCGCGGGGTCAACGGAACCGGGGGTCGGGGCCTGAGGGTGCGCATCCGGTAGGCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTGCATAGTTGAAGGTCCAGACGCCGGTCGCATTGt < 2:171565/298‑1 (MQ=255) gCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACaaa > 1:97424/1‑298 (MQ=255) caTAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCGGACGCCGGTCGCATTGTA‑GTGAACAAAAAcc < 1:744267/298‑1 (MQ=255) caTAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAAcc > 1:786478/1‑298 (MQ=255) caTAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAAcc > 1:299996/1‑298 (MQ=255) aGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTACGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGCCTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACAACACTGGACATTGGCGTACTCAGCCGCTCTTCATAGTTGAAGGTCCAACCGCCGGGCGACTTGTAGGTGAGC‑AAAACCAgc > 2:591814/1‑298 (MQ=255) gCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCCAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTTAAGGTCCAGACGCCGGTCGCCTTGTC‑GTGAACCAAAACCacgg > 2:762219/1‑295 (MQ=255) aTTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCa > 1:204932/1‑298 (MQ=255) ggCGCAAAGTCGGCCGAGGCGTGCGGGAACGGCGGCAGGGGGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGGTCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGCCTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGa < 2:278436/298‑1 (MQ=255) ggCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGa < 1:328511/298‑1 (MQ=255) aaCTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCaa > 1:757581/1‑298 (MQ=255) aTGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCAc > 2:238285/1‑298 (MQ=255) cGGGACCAGCGGCAGGGGGAACCGCCGCAAGCCGTAGGCGGCAGTTTGCACAAAAGTCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCGGCCATGCAGCGGAACCACCGACATTTTGACGGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCa < 2:363979/298‑1 (MQ=255) cAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTGTGACTGCGAAGGCGATGAAGAAGCCCAGCATCAACAGGTATTCCACACAACTGGACATAGGAGTATTCAGCAGCTTTTCATAGTTGAAGGTCAAGACGACGGCCCGATTGTA‑GGGAACAAAACCCAGCGCCCGGACGGCAAACAACAGCCCCATGGCAATCgac > 2:489426/1‑296 (MQ=255) gCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGgt > 2:68373/1‑298 (MQ=255) gaAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATg > 1:99888/1‑298 (MQ=255) aaCGAAGCAACCCGTAAGCGGCAGTATGCGACAAATCCCCCGCGAGGTCAACGGAACCGGCGGTCGGGGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATgaa < 2:383252/298‑1 (MQ=255) agcaAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACt < 1:392028/298‑1 (MQ=255) gcaAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGACGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTAATAGTTGAAGGCCCAGACGCCGGTCGCCTTGTA‑GTCAACCAAAACCAGCGCCAAGATGGCAATCAACATCACCCGGCCAATCGCCTGGGTTTACATGCAGAACtg > 2:706239/1‑297 (MQ=255) aaaCCGTGAGCGGGAGTTTTTAGGCAGGACCCCGCGAGGGCAACGGAACCGGGCGTCGGGGCCTGAGGGGGCGCATCCGGTAGCCAGCCAAGCAGCGGAACCACCGACATTTTGACCGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTgg < 2:276535/298‑1 (MQ=255) aCCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGtt > 1:751333/1‑298 (MQ=255) ccGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAACATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTa < 1:574950/221‑1 (MQ=255) ccGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAACATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTa > 2:574950/1‑221 (MQ=255) tAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTgccg > 2:609330/1‑298 (MQ=255) tagtcggcatcAAGACGCCCGCGTGGTCACCTGCACCGTCGGTCGAAGCCTGAGGGTGCGCATCGGGTAGCAGGCCAGGCAGCGGAACCGCCGACATTTTGACTTCGAAGGCGATGAAGAGGCCCAGTATTAACAGGGAGTCCCCACCACGGGACATTGGCGGATTCAGCAGCTCTGCATAGTTGAAGGGCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGAt < 2:675103/288‑1 (MQ=255) gTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACAAGGCCACCCGCCTGGGTTTAAATGAAGAACTTGGTTGCCGCCGTGacac > 2:286605/1‑298 (MQ=255) ttttCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCAACTCGCCTGGGTGTAAATGAAAAACTGGGTTGCCGCCGTGAAAcg > 2:289812/1‑298 (MQ=255) gcagcgcccgGCGGGGTCAACGGAGCGGGCGGTCGGAGCCTGAGAGGTCGCATCCCGTAGCCAGCCCTGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAGACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTa < 2:389241/292‑1 (MQ=255) cgcgAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCagag > 2:306743/1‑298 (MQ=255) gAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCt < 1:88960/298‑1 (MQ=255) cAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATg > 1:511140/1‑298 (MQ=255) aaCGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGc > 1:271707/1‑298 (MQ=255) aCCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCcac < 1:306743/298‑1 (MQ=255) ccGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTCTTCCGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGGA‑GTGAACAAAAACCAGCCCCAGTATGGCAATCCACATCACCAGGCCACCCGCCCGGTTCTAAATGAAAAACTTGGCTGCCCCCGTCAACCCCGTTTCACCGCCAGAGGcctatcgcccccccc > 2:694693/1‑284 (MQ=255) aGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACAGTGCGATCAgg > 1:657266/1‑298 (MQ=255) aGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACAGTGCGATCAGGAAGTACATCGGCACCAGCATCATTTCCCagaaga < 1:47477/298‑1 (MQ=255) gCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTAAGAGGCTTTATGCCCCCACAGTGCGACCAGGAAGTACAGCGGCAACAGCACCATTTCCCcgaagaa > 2:469724/1‑298 (MQ=255) gCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACAACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGACGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACAGTGCGATCAGGAATTACATCGGACCCAGCATCATTTCCCagacaaa > 2:695883/1‑294 (MQ=255) ccaccGACAGTGTGCCGGCGAAGGGGATTGAGAAGGCCCGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCTGGCTCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGATGCTTTATGCCCCCACAGTGCGATCAGGAAGTACATCGGCACCAGCATCATTTCCCAgaagaagaagaa < 2:509997/298‑1 (MQ=255) ccGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACAGTGCGATCAGGAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAg < 2:757581/298‑1 (MQ=255) | CCGGTGTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGGCATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATAGTTGAAGGTCCAGACGCCGGTCGCATTGTA‑GTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACAGTGCGATCAGGAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAG > CP006584/2483355‑2483941 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |