| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006584 | 459,705 | Δ1 bp | coding (137/276 nt) | LY180_02175 ← | transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006584 | 459,702 | 0 | C | . | 96.5% | 239.4 / ‑1.4 | 59 | coding (140/276 nt) | LY180_02175 | transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (1/0); major base . (27/29); minor base T (0/2); total (28/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.94e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
GGTATGGCAAACGCCGGTATGGGTGACTTTAATCAGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCGCCCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGCTAATCG > CP006584/459406‑459986 | ggTATGGCAAACGCCGGTATGGGTGACTTTAATCAGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCGccc > 1:335925/1‑299 (MQ=255) gTATGGGTGACTTTAATCAGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTg > 1:91584/1‑299 (MQ=255) cTTTAATCAGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATg < 1:45316/299‑1 (MQ=255) aGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑ACCGAACGGCAGCGAACGGTTGGGGTATGGCACGGcc > 1:707094/1‑298 (MQ=255) cTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTCACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGCACGACAGCCACCTGTTGGGGTTGGGCGCGGCATTAGGctcgc > 2:127800/1‑295 (MQ=255) ttCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTc < 1:385923/299‑1 (MQ=255) cGGTGGTGCAACTTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCTAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCa < 1:415995/299‑1 (MQ=255) aCGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTc < 1:20665/299‑1 (MQ=255) gTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCa > 1:49904/1‑299 (MQ=255) gATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCt > 1:330960/1‑299 (MQ=255) ttttcaggCGGTTTACCGGGGGCAAATGCAACGTCAGCACGTGATGTCATCTCTCGCTCTTCCTCAATATGGTAATAGATGCATC‑TATTTAGGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGACATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTg < 2:334044/292‑1 (MQ=255) cGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCCAACGTTTCCCGGATATGGCGTTCAAGCACTTCTGCCATCAGCCCGTTAGACGCTCCCC‑AACGGCAGAGATCTGTTGGCTTCTGGCACGGCATTCGGCATCAACCTCCACACACCGTCCCAGGGCACCaacccccccccaca > 2:434990/1‑287 (MQ=255) ggTTTACCGGGAGCAAAGTCAACGGCGGAACGTCGTTTCAGCTTTCGCTCATCCTCGATATGGTAAATGATTCAGC‑TAATTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATGGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAAt < 2:334850/299‑1 (MQ=255) gCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCg < 1:362754/299‑1 (MQ=255) aaaTGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTGGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCACCGATCTGTCGGAGTATCGCACGGCATCTGGCATCACACCCCAGCGACCGGTCCAGTGCAACAACCTGCACTCGAATAAGCAGAAATCGaa > 2:231268/1‑298 (MQ=255) acgggagacattgttttCATCTGTGTGTCTTCATCAATGGTGTAATAGATTAAGC‑TATTTAAGTGAGGTTGGATACAGTGGATGAGTGGCGTCAACGGAGGGGCTGACTGCGGGGTTGTGGCATTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGAGATCTGTTGGAGGATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTGGAGTAAGGAc < 2:645837/285‑1 (MQ=255) aCGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGAc < 1:241196/299‑1 (MQ=255) aCGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTttct < 1:670801/299‑1 (MQ=255) aTTTCCTCTCGCGCTCTTCCTCAATATTGTGATTGATTCAGC‑TATTTAAGGTAGGTTCGTACCAGTTCAATAGTGTCGTGACAGTATTGGCTGACCTATCGGTTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTTTGCCAGCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTtcttctct < 2:703789/299‑1 (MQ=255) ttCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAACCGCG‑CCCGCAAGCCAGCGATCAGTTGGCGGATGGCCCGGCTTTCGGCATCCCCCCCCAGACACCCTTCCAGACCATCAATCTCCCCGCGACAACGACGCCCTGGATTCAGGATCtttttttctttttc > 2:503739/1‑290 (MQ=255) cATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCg < 1:297566/299‑1 (MQ=255) aTCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCgg > 1:471879/1‑299 (MQ=255) aTCTCTCGCTCTGTCTCAATATGGTAATAGATTAAGC‑TATTTAAGACAGGCTCGAACAAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCATACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATAAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCCGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCgg < 1:438342/299‑1 (MQ=255) tctctcGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTTGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGa > 1:41609/1‑299 (MQ=255) cttcGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGt < 1:703541/297‑1 (MQ=255) ctcGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTa > 1:88845/1‑299 (MQ=255) tcGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGCTCTGTTGGAGTATGGCCCGGCCTTCGGCATCACCCTCCAGCGACCGTTCCCAGGCATCCATCTGCCCCCGAATACCACCAACCACACTAAGGAGCCTTTTCTTCCCTTCCgggacaa > 2:703541/1‑294 (MQ=255) cGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACt > 1:111215/1‑299 (MQ=255) gCTTTTCCTCAATATGGTATTTGATTCGGC‑TATTTAAGCAAGGCTCGAACGAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTg < 2:335925/299‑1 (MQ=255) gCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGACGCG‑CCCGAACCGACGCGATCTGTTGGAGCATGTCCCGGACATCCGCCTCACCCTCCACGCACCGTTCCAGGCCATCAACCCGCCCTCGACTCAGACGACCTCTCGCCAGCACCCTTTTCTTCTACTCCGGCCTACtc > 2:263695/1‑298 (MQ=255) ttCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCTAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGAGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGCACTCGCGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCa > 1:205393/1‑299 (MQ=255) atGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCAACCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCAcc < 1:434990/299‑1 (MQ=255) tgTAATAGATTTCGCATATTAAAG‑TAGGCCGCAACCAGTTCAAGGTCGGCGTCAACGGATTGGCTGATCTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGCTATGGCTTTCAAGCACTTCTGCCATCAGACCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCtc < 2:330960/298‑1 (MQ=255) ggggagaggttCAGC‑TATTTAAGAAGCGCTCGTACGTTTTAAAGATTGGCGGCAACGGATGGGTTGACGTCGCGGCTGTAGCAGTCAGGTCGGTCAAACGTTTCCCGGACATGGCTTTCATGCATGTCTGCCATCGGCCCGGTAGCCGC‑TCCCGAGCGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTGTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCtc < 2:22422/290‑1 (MQ=255) aTAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCATCCGGAGTACTGGGCATTTCGCACCtcatca < 1:68708/299‑1 (MQ=255) tCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCa > 1:21719/1‑299 (MQ=255) cAGC‑TATTTAAGATAGTCTCGAACCAGTGCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCCTCAGCCCGTTAGCCGCG‑CCCGAACGGACGCCATCTCTCTCAGTATGGCACGGCTTTCGGCATCACCCTCCCGCAACCGTCCCAAAGCATCCATCTGCGCACGAATACGCAGAACTCGCTCAAGGCATTTTTTCTTCTCTTTCCAACTGATGGGTTTTTCGCACCtcacactctgcca > 2:276730/1‑289 (MQ=255) c‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCATCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCa > 1:537607/1‑299 (MQ=255) aaGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATAc > 1:368743/1‑299 (MQ=255) aTAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACtat > 1:687695/1‑299 (MQ=255) aGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAg > 1:553215/1‑299 (MQ=255) cTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAgggg < 1:531324/299‑1 (MQ=255) cAATAGTGTCGTCAACGGATGGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTatat < 1:304748/299‑1 (MQ=255) aTAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGt > 1:453734/1‑299 (MQ=255) ggATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATAccccc < 1:512153/299‑1 (MQ=255) aTTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCt < 1:705450/299‑1 (MQ=255) ccTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGCTCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTGTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGtata < 1:569077/298‑1 (MQ=255) aCTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGtata < 1:680573/299‑1 (MQ=255) gCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACACTg > 1:309486/1‑299 (MQ=255) cTGTAGCAGTCATTTCCGGCAGACGTTTCCCTGGTATGGCGTTCAAGAACTTGTTCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATATGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCCACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGGCAATGCATACCCCCCTATAGTATATAACACTgg < 2:134265/299‑1 (MQ=255) gTAGCAGTAATTTCGGCCAAACGTTTCCCGGTTATGGCTTTCACGCACGTCGGCCAGCATCCCGTTGGCCGC‑TGCCGAACGGCCGCGGTCTGTTGGAGTATGGCACGGCATTCGGCATCACCGTCCAGCGACCGTTCCAGAGCATCAAGCTGCCCTCGAATACGACGAACTCGAGTAACGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGgag < 2:453734/299‑1 (MQ=255) cGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATc < 1:614016/299‑1 (MQ=255) gTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCg < 1:458830/299‑1 (MQ=255) aCGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGaa < 1:106510/299‑1 (MQ=255) gTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAAtg > 1:431372/1‑299 (MQ=255) atatGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATTGCACGGCATCCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGACCTCGAAAACGACGTACTCCAGTAAGGACGTATGTCTTCTCCTACGGAGCACTGGGCATTTAGCACCACAACATCTTCACGACCTATACACTCGGGGGGTCTCCTGTCTTACAATGCATACCCCCCAATAGTATGATCCACTGCCTAATAAAATATAGCCGGtaacaggggggggaa > 2:664636/1‑285 (MQ=255) gCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACaa > 1:187065/1‑299 (MQ=255) tcgcgtcgtcccGTTAGCCGCG‑CCCGACCGGGAGAGATGTGTTGGAGGATTGCACGGCATTCGGCCTCACCCTCCGGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCGTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggg < 2:111215/290‑1 (MQ=255) ccATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATTGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAAGCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCAGCATCTGCACGCAATATACTATAGGGGGGTACTCTCATTGTCCATGCATTCCCCCCTATATTCTATAACAATTGAAAAAAAAATTTAACCGGTGAATGTGGTCGGAAACAAAAGCGGAAAGTGGGTGCt > 2:348225/1‑299 (MQ=255) aGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCTTCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGCTAATCg > 1:462970/1‑299 (MQ=255) | GGTATGGCAAACGCCGGTATGGGTGACTTTAATCAGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGC‑TATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCGCCCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGCTAATCG > CP006584/459406‑459986 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |