Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006584	1,168,401	C→A	S606* (TCG→TAG)	LY180_05445 →	glucosyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006584	1,168,401	0	C	A	95.1%	129.6 / ‑5.7	42	S606* (TCG→TAG)	LY180_05445	glucosyltransferase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base A (20/19);  minor base G (0/2);  total (20/22)
Fisher's exact test for biased strand distribution p-value = 4.88e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CCGGTTCACCGTGCGGTGTTCCTGACGGGCGTGATGTCTTATCTCTCCGCTCCGCTGTGGTTTA‑TGTTCCTCGCGCTCTCTACTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATCGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCTGTCACCGTTTGTTTCGGTGATTTCCAGCCGTGCC  >  CP006584/1168106‑1168696                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                        ccGGTTCACCGTGCGGTGTTCCTGACGGGCGTGATGTCTTATCTCTCCGCTCCGCTGTGGTTTA‑TGTTCCTCGCGCTCTCTACTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGtt                                                                                                                                                                                                                                                                                                      <  1:468017/299‑1 (MQ=255)                gtgtTCCTGACGGGCGTGATGTCTTATCTCTCCGCTCCGCTGTGGTTTA‑TGTTCCTCGCGCTCTCTACTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCt                                                                                                                                                                                                                                                                                       >  1:694820/1‑299 (MQ=255)                     ccTGACGGGCGTGATGTCTTATCTCTCCGCTCCGCTGTGGTTTA‑TGTTCCTCGCGCTCTCTACTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCtttttt                                                                                                                                                                                                                                                                                  >  1:276443/1‑299 (MQ=255)                              cGTGATGTCTTATCTCTCCGCTCCGCTGTGGTTTA‑TGTTCCTCGCGCTCTCTACTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGtgctgc                                                                                                                                                                                                                                                                         >  1:616297/1‑299 (MQ=255)                                 gATGTCTTATCTCTCCGCTCCGCTGTGGTTTA‑TGTTCCTCGCGCTCTCTACTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTgg                                                                                                                                                                                                                                                                      >  1:199269/1‑299 (MQ=255)                                      cTTATCTCTCCGCTCCGCTGTGGTTTA‑TGTTCCTCGCGCTCTCTACTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCg                                                                                                                                                                                                                                                                 >  1:158557/1‑299 (MQ=255)                                                     agttttgGTTTATTGTTCCTCCGGCTCTCGTTTGCGTTGCAGGTAGTCCTGGCGTTGACCGACCGCCAATGCGTCCGGAGACATCGGGAGTTGTTCCCGGTGTGGCGGCAGGGGCGTGCTGAGCTGGGGATTGCACTGTTTGCTTCGGCGATGGTGCTGTTTTTGCTGCCGAAGTTATTGAGGATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAAGACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGtt                                                                                                                                                                                                                                                   <  2:661380/294‑1 (MQ=255)                                                        tgtgGTTTA‑TGTTACTCGCGCCTTCTACTTCATTGCAGGTGGTGAGTGCGTTGTCCGAAACGGAATACTGCCTGCAACCACGGTAGTTGGTCCTGGTGTGGCCGCAGTGGCGTCCTGAGCTGGGGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCGGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGTTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTACag                                                                                                                                                                                                                                               <  2:178059/299‑2 (MQ=255)                                                                      ccTCGCGCTCTCTACTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTg                                                                                                                                                                                                                                  >  1:603384/1‑299 (MQ=255)                                                                                   aCTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGTTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCt                                                                                                                                                                                                                     <  1:458641/299‑1 (MQ=255)                                                                                     tGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTg                                                                                                                                                                                                                   >  1:252960/1‑299 (MQ=255)                                                                                               gtagtaCATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCACGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGGATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTACTTGGCTGGGAAgt                                                                                                                                                                                                         >  1:705572/1‑299 (MQ=255)                                                                                                  gtaCAGGCGGTCCCCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAgtggt                                                                                                                                                                                                      <  2:252960/299‑1 (MQ=255)                                                                                                      aTGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTgg                                                                                                                                                                                                  >  1:499490/1‑299 (MQ=255)                                                                                                                       cAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGtga                                                                                                                                                                                 >  1:100570/1‑299 (MQ=255)                                                                                                                           aCTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTCTAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTCCGCATGCTGCTCCATACGGTCTTCGTTGTCAGCTCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGtgagtat                                                                                                                                                                             >  2:631866/1‑295 (MQ=255)                                                                                                                               ccTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACt                                                                                                                                                                         >  1:206163/1‑299 (MQ=255)                                                                                                                                   ggaCCTCGGCAGTTGGTCCCGGGGTGGCCGCAGGGGGTTCTTGGTCTGGCGATTGCAATTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCAc                                                                                                                                                                     <  2:158557/297‑1 (MQ=255)                                                                                                                                             atgtttgcccGGTGGGGGCGTGGTGGTGGCCTGGGGTCGGGATTGCTTTTTTTGTTTCTGCTAGTGTGCGGTTGTTCCAGTCTGAGGTATTGGGCATTTTGCTGAGTGTGGT‑CAAAGGTACGAAAGGAGTCGGTGGCCTGTTGCGCGGTACATTATAGTGGCTGCTGGAAGTGCTTTTTTCCGTGCGGCTGGCTCCGGTACGCATGCTGTTCCAGACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAAGTCACCGCAGCGTGATGATGGCTCCAATTCCTGGGGt                                                                                                                                                           <  2:247371/292‑1 (MQ=255)                                                                                                                                                     ccGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGACGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGtt                                                                                                                                                   >  1:273996/1‑299 (MQ=255)                                                                                                                                                      cGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGCAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTc                                                                                                                                                  >  2:181879/1‑299 (MQ=255)                                                                                                                                                      cGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTAGACTATGGTGCGGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGTCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTc                                                                                                                                                  <  1:468785/299‑1 (MQ=255)                                                                                                                                                                   gTGGCGTCCTGGGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCt                                                                                                                                     <  1:265799/299‑1 (MQ=255)                                                                                                                                                                     ggCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTca                                                                                                                                   <  1:616081/299‑1 (MQ=255)                                                                                                                                                                           cTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAgctg                                                                                                                             >  1:187143/1‑299 (MQ=255)                                                                                                                                                                                   gCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAgg                                                                                                                     >  1:192399/1‑299 (MQ=255)                                                                                                                                                                                             tttttGTTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTTCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTgg                                                                                                           <  1:147923/299‑1 (MQ=255)                                                                                                                                                                                                       gACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCCCAGCTGCTGTTAGGGTTAGTGTGGGCTGGTGGGa                                                                                                 >  1:79415/1‑299 (MQ=255)                                                                                                                                                                                                         cTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATg                                                                                               <  1:181879/299‑1 (MQ=255)                                                                                                                                                                                                                        tCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATTCGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTg                                                                                <  1:607589/299‑1 (MQ=255)                                                                                                                                                                                                                        tCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTg                                                                                <  1:93909/299‑1 (MQ=255)                                                                                                                                                                                                                               aggtgttttggtgaTTTTTGTTA‑TCTGGTGCAAGGTAGCGAAAGGATGCGGCGGCGGTTGGCGCGTTAGATTTTTGGTGCTTCTGGAAGGGCTTTTTTCCGGTCTGGTGGCTCCGGTACGGATGCTGTTCCATACGGTCTTCGTTGTGAGCGCGTTCCTTGGCTTGGAAGTGGTGTGGGATTCACCGCAGCGTGATGATGACGCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTcc                                                                         <  2:694820/286‑1 (MQ=255)                                                                                                                                                                                                                                aaGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCt                                                                        <  1:631866/299‑1 (MQ=255)                                                                                                                                                                                                                                              tttGTTTA‑TTTGTGGTAAAGGAGAGAAAGAAAGGGGCGTGTTCGTGCGCGTTACATGATGGTTGCTGCTGGAAGTGTTTTTTTCCGTGCGGCTGGTTCCGGTACGCTTGCTGTTCCGTACGGTCGTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGTAATTCACCGCAGCGTGATGATGACTCCACGTGCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTGAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCAc                                                          <  2:499490/299‑1 (MQ=255)                                                                                                                                                                                                                                                        cTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCAGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGtct                                                 >  1:492852/1‑299 (MQ=255)                                                                                                                                                                                                                                                          ggTGCAAAGGAAAGAAAGAAGACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAATTGCTTTTTTCCGGGCTGCTGGCTCCGGTACGCATTCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGtcttc                                               <  1:513258/299‑1 (MQ=255)                                                                                                                                                                                                                                                              cAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGt                                           >  1:619876/1‑299 (MQ=255)                                                                                                                                                                                                                                                                     aCGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCt                                    <  1:474153/299‑1 (MQ=255)                                                                                                                                                                                                                                                                      cGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTGCCTTGGCTGGGTAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACCTCTGCCTTTAGGGTTGGGGTGGGCTGTTGGGACGGCTGGGCGGGATCAGCGTGCCCTTTTTTGGATGTGACGGATAGTAGTATCGTTggattgt                                   >  2:437627/1‑293 (MQ=255)                                                                                                                                                                                                                                                                         aaGAATACGGTGGCTTCTGGTGCGTTACGTTATGGTTGCTGCTGGAAGTTCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTGCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCTGTCa                                <  2:192399/299‑1 (MQ=255)                                                                                                                                                                                                                                                                                    ggcTTCTGGTGGTTTACATGCTAGTTGGTGTTGGAAGTTGTTTTTTCCGTGCTGCTGGCGCCGGTACGCATGCTGTTCCATATGGGCTTGTTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCTGTCACCGTTTGTTTc                     <  2:616297/299‑1 (MQ=255)                                                                                                                                                                                                                                                                                               cgTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCTGTCACCGTTTGTTTCGGTGATTTCCa          <  1:534775/299‑1 (MQ=255)                                                                                                                                                                                                                                                                                                       tataGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGACACCGATTGTCTTCTCGTTGATCCTGTCACCGTTTGTTTCGGTGATTTCCAGCCGTGcc  >  1:659678/1‑299 (MQ=255)                                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                                        CCGGTTCACCGTGCGGTGTTCCTGACGGGCGTGATGTCTTATCTCTCCGCTCCGCTGTGGTTTA‑TGTTCCTCGCGCTCTCTACTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTA‑TCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATCGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCTGTCACCGTTTGTTTCGGTGATTTCCAGCCGTGCC  >  CP006584/1168106‑1168696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑