Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006584 1,335,968 A→G intergenic (+281/+21) LY180_06295 → / ← LY180_06300 thymidine kinase/bifunctional acetaldehyde‑CoA/alcohol dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0065841,335,9680AG98.4% 214.7 / ‑4.4 64intergenic (+281/+21)LY180_06295/LY180_06300thymidine kinase/bifunctional acetaldehyde‑CoA/alcohol dehydrogenase
Reads supporting (aligned to +/- strand):  ref base A (1/0);  new base G (25/38);  total (26/38)
Fisher's exact test for biased strand distribution p-value = 4.06e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.87e-01

GCATCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATATTGCCAGACAGCGCTACTGATTAAGCGGATTTTTTCGCTTTTTTCTCAGCTTTAGCCGGAGCGGCTTCTTTTTTCGCTGCAGTTTCACCTTCTACATAATCACGACCGTAGTAGGTATCCAGCAGGATCTGTTTCAGCTCGGAGATCAGCGGGTAACGCGGGTTAGCGCCGGTGCACTGGTCATCGAACGCATCTTCAGACAGTTTATCCACGTTCGCCAGGAAGTCTGCTTCCTGAACGCCAGCTTCACGGATAGATTTCGGAATACCCAGTTCAGCTTTCAGCGTTTCCAGCC  >  CP006584/1335672‑1336263
                                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                                       
gCATCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGtt                                                                                                                                                                                                                                                                                                       <  1:21188/299‑1 (MQ=255)
    cGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCa                                                                                                                                                                                                                                                                                                   <  1:42779/299‑1 (MQ=255)
      ccACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTCTACGCACTTCTTCCGGGCTATATACCCCTCTCGGCAGTCTTTTCACGTCGCTATACGCCCCACAGTGCTCTTCAGCACCGACTTTCACTTGTGACCTGTAAAGTCCAATATCCCTGTCTTTAGGCGTTATACATCGTCGCAAATATACTGAAGACTAATGCTGTCCGTTTAGGGAAAAGTTGCTATGCGTAAACAACAAAACGGCCCAAAAACGGACCGTTTACGTTGccgag                                                                                                                                                                                                                                                                                                 >  2:371127/1‑296 (MQ=255)
                taataaTTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCCCACAAGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGGACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTTTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACt                                                                                                                                                                                                                                                                                       <  1:208586/299‑1 (MQ=255)
                 aggAATGTCTTTACTGGTGGGGTCAGGAGGGAACTTTTATCGTGTCAGTGCGGTTTCCGCACTTCTTACGGGCTATAGTCACCTCTCGGAAGGTTGTTAACGCCGTTATACGCCTCACAGGGCTCTTAAGCACCTACATTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTGTAGGCTGTATACATCGTAGCAAATATGATGAAGGCTAATGATGTCGGTTTATTGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTg                                                                                                                                                                                                                                                                                      <  2:455728/297‑1 (MQ=255)
                       ttCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgccta                                                                                                                                                                                                                                                                                >  2:250267‑M1/1‑294 (MQ=255)
                            tACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaa                                                                                                                                                                                                                                                                           >  1:560563‑M1/1‑289 (MQ=255)
                                gACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaa                                                                                                                                                                                                                                                                       <  1:315197‑M1/299‑15 (MQ=255)
                                   aGGGTGAGCTGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcc                                                                                                                                                                                                                                                                    <  1:322465‑M1/299‑18 (MQ=255)
                                          gCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgct                                                                                                                                                                                                                                                             <  1:150918‑M1/299‑25 (MQ=255)
                                           cAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctc                                                                                                                                                                                                                                                            >  1:63363‑M1/1‑274 (MQ=255)
                                            aGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctct                                                                                                                                                                                                                                                           >  1:201798‑M1/1‑273 (MQ=255)
                                                      tATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatg                                                                                                                                                                                                                                                 <  1:724839‑M1/299‑37 (MQ=255)
                                                      tATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatg                                                                                                                                                                                                                                                 <  1:69653‑M1/299‑37 (MQ=255)
                                                               aGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttt                                                                                                                                                                                                                                        <  1:616355‑M1/299‑46 (MQ=255)
                                                                    gTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttag                                                                                                                                                                                                                                   <  1:250267‑M1/299‑51 (MQ=255)
                                                                         cagcccttattccgggCTATCTACCCGTCTCGCCATTTTTTTAACGCCGTTTTACTGCTCACAGGGCTCTTAAGCATCGACGTTGACTTTTGGCCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaat                                                                                                                                                                                                                              <  2:689455‑M1/294‑56 (MQ=255)
                                                                           gccactcttccgtgcTTTAAACCCTTCTCGGCAGTTTTTGAAGGCCGCGATACGTCTCAAAGGGCTCTTAAGCACCGTAGTTGACTTGTGGCCTGTAAATGACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatca                                                                                                                                                                                                                            <  2:106680‑M1/294‑58 (MQ=255)
                                                                                 cttcCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgct                                                                                                                                                                                                                      >  1:461746‑M1/1‑236 (MQ=255)
                                                                                   tcCTGGCTATATTCCCTTCTCGGATATTTTTTTACGCCGCTATACGCCGCACAGGGCTCTTAAGCACCGAAGTTGAATTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcg                                                                                                                                                                                                                    <  2:702957‑M1/299‑66 (MQ=255)
                                                                                         cTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacg                                                                                                                                                                                                              >  1:124157‑M1/1‑228 (MQ=255)
                                                                                           tgatacgCTTCTCGGCAGTTTTTTAACGGCGCTATACGCCTCAAAGGGCTATTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgag                                                                                                                                                                                                            <  2:100369‑M1/297‑74 (MQ=255)
                                                                                                cccTTGTCGGTAGTTTGTTGAGGCTGCGATAGCCCTCACAGTGCTCTTAATGACCGTGGTTGATTTGTGACCTGTAAAGTACAATATACCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGTGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtat                                                                                                                                                                                                       <  2:422919‑M1/299‑79 (MQ=255)
                                                                                                cccTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTTGGTAAACAAAAAAAAGCCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctacttaattaataccaatgctcccctgctaatgttaaacttttttcgtaaataatctgctcgaatacgagagtat                                                                                                                                                                                                       >  2:634458‑M1/1‑221 (MQ=255)
                                                                                                cccTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAAGCAGCGCTACTGCacctacttaaatcaaccatatgttctcctgataatgttaaactttttttttaaatccattgctacaatacggatgttt                                                                                                                                                                                                       >  2:291405‑M1/1‑221 (MQ=255)
                                                                                                   ttCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagt                                                                                                                                                                                                    >  1:377462‑M1/1‑218 (MQ=255)
                                                                                                       cGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagt                                                                                                                                                                                                <  1:318150‑M1/299‑86 (MQ=255)
                                                                                                                tttAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatg                                                                                                                                                                                       <  1:397458‑M1/299‑95 (MQ=255)
                                                                                                                       ccgcTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATATTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgct                                                                                                                                                                                >  1:73107‑M1/1‑198 (MQ=255)
                                                                                                                                gCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatg                                                                                                                                                                       <  1:431341‑M1/299‑111 (MQ=255)
                                                                                                                                     acaGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaat                                                                                                                                                                  <  1:265362‑M1/299‑116 (MQ=255)
                                                                                                                                     acaGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGATGTCGGTTTATGGAAAAGTTGCTTTGGGTAACCAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctacttaattaatcccaatgctctcctgataatattaaacttttttagtaaatcatctgctcgaatcagagagtttagttagtgcggttataatttgcttaaacgatgaaact                                                                                                                                                                  >  2:362053‑M1/1‑184 (MQ=255)
                                                                                                                                           ctctTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaag                                                                                                                                                            <  1:644572‑M1/299‑122 (MQ=255)
                                                                                                                                                 aGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCTTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttact                                                                                                                                                      <  1:517101‑M1/299‑128 (MQ=255)
                                                                                                                                                    aCCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCACAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatccccatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagatgaaagtcagtgcggtgatgatttacttaacctatgaaaatcaaaagcttaactcg                                                                                                                                                   >  2:279313‑M1/1‑169 (MQ=255)
                                                                                                                                                     ccGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcg                                                                                                                                                  <  1:252043‑M1/299‑132 (MQ=255)
                                                                                                                                                         cGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcat                                                                                                                                                                                                                           >  2:459242‑M1/1‑164 (MQ=255)
                                                                                                                                                         cGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcat                                                                                                                                                                                                                           <  1:459242‑M1/222‑59 (MQ=255)
                                                                                                                                                             gACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacact                                                                                                                                          <  2:377462‑M1/299‑140 (MQ=255)
                                                                                                                                                               cTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactca                                                                                                                                        >  1:487498‑M1/1‑158 (MQ=255)
                                                                                                                                                                           aaaGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttact                                                                                                                            >  1:562214‑M1/1‑146 (MQ=255)
                                                                                                                                                                              gTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaa                                                                                                                         >  1:438676‑M1/1‑143 (MQ=255)
                                                                                                                                                                                  aaTATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaaagag                                                                                                                     <  1:538124‑M1/299‑161 (MQ=255)
                                                                                                                                                                                  aaTATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaaagag                                                                                                                     <  1:571040‑M1/299‑161 (MQ=255)
                                                                                                                                                                                                        ataCATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatccgagagtatagtcagtgcggtgatgatttgcttaaactatgaaaatcaaaagcttactcgcgctcacactcactgtgagttaataaaagagtttaaacattagatttattatc                                                                                               >  2:220494‑M1/1‑117 (MQ=255)
                                                                                                                                                                                                              cgtcgCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaaagagtttaaacattagagttattatctctaat                                                                                         <  1:715887‑M1/299‑189 (MQ=255)
                                                                                                                                                                                                                       tatGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaaagagtttaaacattagagttattatctctaatgcgtcactt                                                                                >  1:366937‑M1/1‑102 (MQ=255)
                                                                                                                                                                                                                          gagaaaggctAAGGTTGGGGGTTTATGGAAAAGTTGCGTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaaagagtttaaacattagagttattatctctaatgcgtcacttcca                                                                             <  2:63363‑M1/295‑201 (MQ=255)
                                                                                                                                                                                                                               aGGCTAATGCTGTCGGTTTATTGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGACGGAGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaatgaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgatgtgatgatttgcttaccttctgcaaatcaaaagcttactcgcgctcacactcactgggctttactaaaaacgtttaaccattagagtaattatccataagccaccacttccaggttg                                                                        >  2:587136‑M1/1‑94 (MQ=255)
                                                                                                                                                                                                                                ggCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaaagagtttaaacattagagttattatctctaatgcgtcacttccaggtggc                                                                       >  1:595074‑M1/1‑93 (MQ=255)
                                                                                                                                                                                                                                ggCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaaagagattaaacattagagttattatctctaatgcgtcacttccaggtggc                                                                       <  1:183359‑M1/299‑207 (MQ=255)
                                                                                                                                                                                                                                    aaTGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaaagagtttaaacattagagttattatctctaatgcgtcacttccaggtggcgtaa                                                                   >  1:720983‑M1/1‑89 (MQ=255)
                                                                                                                                                                                                                                         ttatggtttaTGGAAAAGTTGTGTTGGGTAAACAAAAAAACGGGCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacgtttttagtaaatcatctgctcgaatacgagagtatagtcagtgctgtgatgatttgcttagcctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaaagagtttaaacattagagttattatctctaatgcgtcacttccaggtggcgtaagcaag                                                              <  2:461746‑M1/295‑216 (MQ=255)
                                                                                                                                                                                                                                                ttATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaaagagtttaaacattagagttattatctctaatgcgtcacttccaggtggcgtaagcaagattactc                                                       <  1:229745‑M1/299‑223 (MQ=255)
                                                                                                                                                                                                                                                  aTGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaaagagtttaaacattagagttattatctctaatgcgtcacttccaggtggcgtaagcaagattactcac                                                     <  1:168931‑M1/299‑225 (MQ=255)
                                                                                                                                                                                                                                                   ttgaaAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaaagagtttaaacattagagttattatctctaatgcgtcacttccaggtggcgtaagcaagattactcact                                                    <  1:362053‑M1/297‑226 (MQ=255)
                                                                                                                                                                                                                                                   tGGAAAAGTGTGTTTGGGTAAAAAAAAAAACGGACCCAGAAGGAGCCGTTTATGTTGCCAGAAAGCTTTACTGAgcctaattaatgaatcccaatgctctcctgataattttaatctttgttagtaaatcatatgctcgaatacgagagtatagtcagttcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaaagagtttaaacattagagttattatctctaatgcgtcacttccaggtggcgtaagcaagattactcact                                                    <  2:560563‑M1/299‑226 (MQ=255)
                                                                                                                                                                                                                                                              cTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttattaaatcatctgctcgaatacgagagtatagtcattgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttcctaaaaaagtttaaccattagagttattctctctaatgctacacccccaggtggcgtaagcaagattactcacttctggttactg                                         >  2:491839‑M1/1‑63 (MQ=255)
                                                                                                                                                                                                                                                                   ggTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaaagagtttaaacattagagttattatctctaatgcgtcacttccaggtggcgtaagcaagattactcacttctgggtactgattac                                    <  1:696917‑M1/299‑242 (MQ=255)
                                                                                                                                                                                                                                                                         cAAAAAAACGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaaagagtttaaacattagagttattatctctaatgcgtcacttccaggtggcgtaagcaagattactcacttctgggtactgattacgtgatc                              >  1:284905‑M1/1‑52 (MQ=255)
                                                                                                                                                                                                                                                                          aaaaaaaCGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaaagagtttaaacattagagttattatctctaatgcgtcacttccaggtggcgtaagcaagattactcacttctgggtactgattacgtgatcc                             >  1:86865‑M1/1‑51 (MQ=255)
                                                                                                                                                                                                                                                                            aaaaaCGGCCCCAGAAGGGGCCGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaaagagtttaaacattagagttattatctctaatgcgtcacttccaggtggcgtaagcaagattactcacttctgggtactgattacgtgatccaa                           >  1:35883‑M1/1‑49 (MQ=255)
                                                                                                                                                                                                                                                                                                 cGTTTATGTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaaagagtttaaacattagagttattatctctaatgcgtcacttccaggtggcgtaagcaagattactcacttctgggtactgattacgtgatccaaatcaaatttttgcaaagctga      <  1:634458‑M1/299‑272 (MQ=255)
                                                                                                                                                                                                                                                                                                  gTTTAAGTTGCCAAAAAGTGCTACTGAgcataattaattaagcccaatgctctcctgaaaatgttaaactttgttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaaagagtttaaacattagagttattatctctaatgcgtcacttccaggtggcgtaagcaagattactcacttctgggtactgattacgtgatccaaatcaaatttttgcaaagctgac     <  2:284905‑M1/299‑273 (MQ=255)
                                                                                                                                                                                                                                                                                                     tatgTTGCCAGACAGCGCTACTGAgcctaattaattaatcccaatgctctcctgataatgttaaacttttttagtaaatcatctgctcgaatacgagagtatagtcagtgcggtgatgatttgcttaacctatgaaaatcaaaagcttactcgcgctcacactcactgtgatttactaaaagagtttaaacattagagttattatctctaatgcgtcacttccaggtggcgtaagcaagattactcacttctgggtactgattacgtgatccaaatcaaatttttgcaaagctgacacc  >  1:369828‑M1/1‑24 (MQ=255)
                                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                                       
GCATCGCCACGATTAATAAGAATTTCTTTACTGACAGGGTGAGCAGGGCACTTTTATCCTGTCAGTTCGTTTTACGCACTTCTTCCGGGCTATATACCCTTCTCGGCAGTTTTTTAACGCCGCTATACGCCTCACAGGGCTCTTAAGCACCGACGTTGACTTGTGACCTGTAAAGTACAATATCCCTGTGTTTAGGCGTTATACATCGTCGCAAATATGATGAAGGCTAATGCTGTCGGTTTATGGAAAAGTTGCTTTGGGTAAACAAAAAAACGGCCCCAGAAGGGGCCGTTTATATTGCCAGACAGCGCTACTGATTAAGCGGATTTTTTCGCTTTTTTCTCAGCTTTAGCCGGAGCGGCTTCTTTTTTCGCTGCAGTTTCACCTTCTACATAATCACGACCGTAGTAGGTATCCAGCAGGATCTGTTTCAGCTCGGAGATCAGCGGGTAACGCGGGTTAGCGCCGGTGCACTGGTCATCGAACGCATCTTCAGACAGTTTATCCACGTTCGCCAGGAAGTCTGCTTCCTGAACGCCAGCTTCACGGATAGATTTCGGAATACCCAGTTCAGCTTTCAGCGTTTCCAGCC  >  CP006584/1335672‑1336263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: