Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006584 1,464,821 A→G intergenic (+486/‑118) LY180_06955 → / → LY180_06960 hypothetical protein/regulatory protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0065841,464,8210AG98.4% 209.4 / NA 63intergenic (+486/‑118)LY180_06955/LY180_06960hypothetical protein/regulatory protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base G (27/35);  minor base T (1/0);  total (28/35)
Fisher's exact test for biased strand distribution p-value = 4.44e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GGTGACTGGTTGTTGTGTTCCATTTCTACAGAACAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCAGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAACCGGCCAGACGGAGGTCGCTGTCTTC  >  CP006584/1464535‑1465097
                                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                                     
gtggACTGGTTGTTTTGTTCCATTTCTACAGAACAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACAcc                                                                                                                                                                                                                                                                           <  2:63777/296‑1 (MQ=255)
     ttgtgttttgaGTTCCTTTTTTAAAGAAAAAAATCAAATAAACTAGACCCAAGAGTGTCATTGAATAACTGACTATACATCCTCATATTTATCTGGGAGTGTGTACGTCCAATACAGGAGGTTGTCGTGCGGGTTCTCAAATGTGCGCGAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGATGTGACGGGGGTTAAGTAGAATTGCTGCGTGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAg                                                                                                                                                                                                                                                                      <  2:284503/292‑1 (MQ=255)
       ggTTGTTGTGTTCCATTTCTACAGAACAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGc                                                                                                                                                                                                                                                                    >  1:226702/1‑299 (MQ=255)
            ttgtGTTCCATTTCTACAGAACAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATa                                                                                                                                                                                                                                                               >  1:661496/1‑299 (MQ=255)
             tgtgTTCCATTTCTACAGAACAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATag                                                                                                                                                                                                                                                              <  1:312508/299‑1 (MQ=255)
                          tACAGAACAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTTCTGGAGGCTATCTTTCTCGGGCATGAACACCAAAAGGCAAGTAGAAAAAAGcccctg                                                                                                                                                                                                                                                 >  2:671734/1‑297 (MQ=255)
                              gAACAAAATCACATAAACTAATCCCAATAGTTGCATTGAATCCATGACGAGGAATCCTCATATTTTTCAGGATTGTGGTACGTCCAATACAGGCGGTTGTCTTGCTGGTTTTCAAATGTGCGCTGGCTATTGCGGCGGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTGGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTaa                                                                                                                                                                                                                                             <  2:254430/299‑1 (MQ=255)
                              gAACAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTaa                                                                                                                                                                                                                                             <  1:126851/299‑1 (MQ=255)
                                aCAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACa                                                                                                                                                                                                                                           <  1:67312/299‑1 (MQ=255)
                                  aaaaTCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACAtt                                                                                                                                                                                                                                         <  1:386189/299‑1 (MQ=255)
                                       cacaGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGTTTCTCAAATGTGCGCTATCTATTGCGGCTGTAATGGCAACTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGTTGCTTGAGGCTATCTGTCTCGGGCATGAACAACACAAGGCAGCTAGAGAAAAACCCAACGTAACATGAcacg                                                                                                                                                                                                                                    >  2:462400/1‑299 (MQ=255)
                                                    cccAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGc                                                                                                                                                                                                                       <  1:9618/299‑1 (MQ=255)
                                                     ccAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGTATCGCCTTTCTGATTGATTTTATATTGGCGAGGTTACGGGGGTTAAGTAGAATTGCTGCGGGTGTGTGAGGCTATTTGTCTGTGGCATGAACACAAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGtagggtaatgagct                                                                                                                                                                                                                      >  2:151845/1‑286 (MQ=255)
                                                         agtttggtgtaaatcaatcACGGGACATTCTCATATTGTGAAGGACGGGTGGTCGTCAAATACGGGAGGTTGGCGTGCTGGTTGTCAAGGGTGCGCTAGCTAGTGCGGCGTTAATGGCAATTTATTGTCTTGCTGTGGTTCTTAGGGATGGGCTTGATGATTGATTTGATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAAc                                                                                                                                                                                                                  <  2:213300/288‑1 (MQ=25)
                                                             tggaTTGAAGCAATGAAGGGACATCCTCATATTTTTCAGGAATGGTGTACGTCCAATACATGAGGTTGTCGTGCTTGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGAGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTa                                                                                                                                                                                                             <  2:693192/296‑1 (MQ=38)
                                                                  ttaatcacctccGATACATCCTCTTATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTTTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGTCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTg                                                                                                                                                                                                        <  2:337191/288‑1 (MQ=255)
                                                                    aaTCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAg                                                                                                                                                                                                      >  1:337191/1‑299 (MQ=255)
                                                                       cACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGcc                                                                                                                                                                                                   <  1:397223/299‑1 (MQ=255)
                                                                        aCTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCa                                                                                                                                                                                                  >  1:502806/1‑299 (MQ=255)
                                                                         cTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCat                                                                                                                                                                                                 >  1:511720/1‑299 (MQ=255)
                                                                              gatgcATCTTCAACTTTATCGGGACTGTGGTAGTGCCAATGCCGGAGTTGGTGGTGCTGGTTCTCAAATGTGGTCTATCGATTGCGGCTTTAATGTCAATTTTTTGTCTTGCTGTTGTTCTTATGGAGCGCCTTTCTGATTGATTTTATATTGGCGGGGTGACGGGGGTTAAGTAGAATTGCTGCGGGGTCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTa                                                                                                                                                                                            <  2:427664/295‑1 (MQ=25)
                                                                               agaCATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTAt                                                                                                                                                                                           >  1:396894/1‑299 (MQ=255)
                                                                                gaCATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGCGGCTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTCTATTGGCTAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTGGAGGCTATCTGTCTCGTGCATGAACACCAAAAGGCAGATAGCGACAAGCCCCATCTAACATTACGACTCCGGGCAGACGGCTAACATAAAACTGGGGCCatagcagtt                                                                                                                                                                                          >  2:656569/1‑293 (MQ=255)
                                                                                 aCATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGc                                                                                                                                                                                         >  1:152256/1‑299 (MQ=255)
                                                                                         atatTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATa                                                                                                                                                                                 >  1:519383/1‑299 (MQ=255)
                                                                                                  aGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGGGGTGACGGGGGTGAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGc                                                                                                                                                                        <  1:235395/299‑1 (MQ=255)
                                                                                                    gACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCct                                                                                                                                                                      <  1:615333/299‑1 (MQ=255)
                                                                                                    caCTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCCATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGCTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGACTGAACACCAACAGGCAGATAGAGAAAAGCCCCCGTTAACATTACCCGCCCGGCAAGACGCCTACATATCATCTGAAGAAAAATCTATGCGACACATAGAAATTAGccc                                                                                                                                                                      >  2:511451/2‑298 (MQ=255)
                                                                                                     gtaggTGTACGTCCAATACAGGTGGTTGTAGTGCTGTTTCTCAAAGGTTGGGTAGTTATGGCGGTTGTAATGTCAAGTTATTGTCTTGCTGTTGTTCTGATGGATCGACTTCATTATTGATGTTAGATTGGCGTGGTGACGGGGGTTAAGTATAATTGCTGCGGGTGGTTGAGGATATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCctc                                                                                                                                                                     <  2:616393/296‑1 (MQ=25)
                                                                                                          tgtACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTAtg                                                                                                                                                                <  1:557293/299‑1 (MQ=255)
                                                                                                                     tACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGc                                                                                                                                                     >  1:667981/1‑299 (MQ=255)
                                                                                                                                   gTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTTACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGAATGAACACCAAAAGGCAGCTAGAGAAAAGCCCCAGGTAACATTACGCGTCCGGCAAGACGATTAACATTAATCTGAGGCCATATCTATTCGAACCAGAGAGCTTAGCCCCTTCTGTGCGTATAGCCAAGGGAAAGcgaac                                                                                                                                       >  2:494609/1‑295 (MQ=255)
                                                                                                                                          ttCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAag                                                                                                                                <  1:656569/299‑1 (MQ=255)
                                                                                                                                                  tgtgCGCTAGCTATTGCGGCTGTAATGGCAATTCATCGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACTGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCCAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCCTCCGGCAAGACGCTTCACATTAATCTGAGGCCATATCTATGCCACACATAGAGATTAGCCTCTTATGGTCCGAAAGGCAAGGAGAAGCATGCTATGAAGCATCaaaa                                                                                                                        >  2:428465/1‑299 (MQ=37)
                                                                                                                                                                     cTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTg                                                                                                     <  1:539087/299‑1 (MQ=255)
                                                                                                                                                                       gtgatggacaTTTATGTTCTGGTTGTTGTTTTTAGTGAGTGTCTTTGTGATTGGTGTTGTATTGGCGATGGTACGGGGGTTAAGTAGAGTTGCTGCGGGTGCTTGAGGCTATCTGTCTGGGGCATTAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGAt                                                                                                   <  2:725126/290‑1 (MQ=21)
                                                                                                                                                                               aaTTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCt                                                                                           <  1:494609/299‑1 (MQ=255)
                                                                                                                                                                                aTTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTg                                                                                          >  1:278925/1‑299 (MQ=255)
                                                                                                                                                                                  ttATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGtt                                                                                        >  1:335986/1‑299 (MQ=255)
                                                                                                                                                                                       gTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAAcc                                                                                   <  1:348797/299‑1 (MQ=255)
                                                                                                                                                                                        tCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCg                                                                                  <  1:671734/299‑1 (MQ=255)
                                                                                                                                                                                             cTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCt                                                                                                                                                                                                                      >  1:228889/1‑163 (MQ=255)
                                                                                                                                                                                             cTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCt                                                                                                                                                                                                                      <  2:228889/163‑1 (MQ=255)
                                                                                                                                                                                              tgttgtTTTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGAGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGAAACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATtg                                                                            <  1:203467/299‑1 (MQ=255)
                                                                                                                                                                                               gttgttCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATtgt                                                                           >  1:371234/1‑299 (MQ=255)
                                                                                                                                                                                                  gttCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGAc                                                                        <  1:48020/299‑1 (MQ=255)
                                                                                                                                                                                                         tGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTg                                                                 <  1:151845/299‑1 (MQ=255)
                                                                                                                                                                                                            aTCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTa                                                              >  1:653182/1‑299 (MQ=255)
                                                                                                                                                                                                               ggcTTTCTGATTGATTTTATATCGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACg                                                           <  1:374669/297‑1 (MQ=255)
                                                                                                                                                                                                                      ttattgattTTATATTGGGGAGGGTACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCGATCTGTCTCGGGCATTAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTGAATCGCGCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAg                                                    <  2:661496/297‑1 (MQ=255)
                                                                                                                                                                                                                      tgattgatTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAg                                                    >  1:204660/1‑299 (MQ=255)
                                                                                                                                                                                                                              tttATATTGGGGGGTGGTCGGGGGTTAGGTGTAATTGTGGGGGTGGTTTGGGGCTCTCTGTTGCGGGCATGAACACCAAAAGGCAGTTAGTGAAAAGCCTCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTTAGGCAATATCTATGCGACACATAGAGATTAGCCTGTTATGGGCTGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAGAGGCGATGTTAATCGCCCTGATCGGCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGc                                            <  2:278925/299‑1 (MQ=25)
                                                                                                                                                                                                                                 atatTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAg                                         <  1:511451/299‑1 (MQ=255)
                                                                                                                                                                                                                                      ggCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACg                                    >  1:705367/1‑299 (MQ=255)
                                                                                                                                                                                                                                         caGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGCGGCCATATCTATGCGACACATAGAGCTTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGCCGATATTAATCGCCCTGATCGTCACCTGTTTCACCGTCATTGTGACGGCACCGGTAACGAGGAAAGACATCTGCCAGGTACGAAt                                 >  2:463785/2‑299 (MQ=37)
                                                                                                                                                                                                                                                cGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAAcc                          <  1:586905/299‑1 (MQ=255)
                                                                                                                                                                                                                                                         aGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTAt                                                                                                                                                                 >  2:447619/1‑155 (MQ=255)
                                                                                                                                                                                                                                                         aGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTAt                                                                                                                                                                 <  1:447619/155‑1 (MQ=255)
                                                                                                                                                                                                                                                             gAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAACCGGCCAGACGGAgg             >  1:143198/1‑299 (MQ=255)
                                                                                                                                                                                                                                                                ttGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAACCGGCCAGACGGAGGTCg          <  1:235999/299‑1 (MQ=255)
                                                                                                                                                                                                                                                                   ctgcGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAACCGGCCAGACGGAGGTCGCTg       >  1:441627/1‑299 (MQ=255)
                                                                                                                                                                                                                                                                       gggTGCTTGGGGGTATCTGGCTCGGGCATGAACACCAAAAGGCAAATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGAAACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAACCGGCCAGACGGAGGTCGCTGTCtt   <  2:143198/299‑1 (MQ=255)
                                                                                                                                                                                                                                                                        ggTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCAATATCTCTGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAAGCGATGTTAATCGCCCTCACCGTCACAGGTGTCAACGTCACTTTGACGGCACTGGTAACGCGGAAAGACCCCTTCGAGGGACGAATCCAAACCCGCCACAAGGAGGtgcccgttctc  >  2:452928/1‑289 (MQ=21)
                                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                                                     
GGTGACTGGTTGTTGTGTTCCATTTCTACAGAACAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCAGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTAATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAACCGGCCAGACGGAGGTCGCTGTCTTC  >  CP006584/1464535‑1465097

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: