Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006584	1,645,421	C→G	intergenic (+1215/+45)	LY180_07765 → / ← LY180_07770	transposase/sulfatase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006584	1,645,421	0	C	G	88.4%	120.7 / ‑3.4	48	intergenic (+1215/+45)	LY180_07765/LY180_07770	transposase/sulfatase
Reads supporting (aligned to +/- strand):  ref base C (5/0);  new base G (15/23);  total (22/26)
Fisher's exact test for biased strand distribution p-value = 1.61e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGGTATACAGCGAGTCGCTCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGATTCGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACACGTTCACGATTTTTGAACAGTGAAGGGGAGTTGTAATATGCCGTTCCTGCAGCGTGGAATCCCATAAAGTAATCAAAGCCACGGTTTTGAGGTTGCCATTCTTCCGCAGAA  >  CP006584/1645161‑1645712                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                                    cGGTATACAGCGAGTCGCTCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGAGTCGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAACGAAAGTCGTGGAAAATATCGACGTCGGACATCTTGTTGTAGGATTATTGATTTTTCGCGCAACCATTTTCCAATATTCCAAGATATGTATCTaa                                                                                                                                                                                                                                                               >  2:282099/1‑298 (MQ=11)           cGAGTCGCTCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGATTCGTTTGATGTTATGTTTTGTTCTCGCTTTGGCTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTGGAGTCGTTTTAAGTGTAATTCGGGGCCGAATTGGTAAAGAGAGTCGTGTAAAATATAGAGTTCGCACATCTTGTTGTCTGAGTATTGATTTCTCGCGAAACCATTTGTTCTTATTACAAGATGTTTTTCTACcttaacttaa                                                                                                                                                                                                                                                     >  2:148364/1‑299 (MQ=11)             aGTCGCTCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGATTCGCTTGATGTTCTGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGGAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTCGTCTGATTATTGCGTTTTAGCGAAACAATTTGATCAAATGACAAGATGTGTATCTACCTTACATTAATg                                                                                                                                                                                                                                                   >  2:697565/1‑299 (MQ=11)                 gCTCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGATTCGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTACTGCGTGGCAAGCCAACGGTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGTGGCAGAATTGGTAAAGAAAGTCGGGTAAAAAATGAACTTCTCACATCCTGTTGTCTGTATATTTATTTTTAACGAAACCATTTGATCATATGAAAACAGTTTTAACTCCCTTAACCTAATTAttt                                                                                                                                                                                                                                               >  2:186636/1‑299 (MQ=11)                 gCTCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGATTCGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGCGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCCTATGACACGATGTGTATCTACTTTAAATTAATGAttt                                                                                                                                                                                                                                               >  2:124741/1‑299 (MQ=9)                 gCTCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGATTCGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCTAAACCATTTGATCATATAACAATATGTGTATATCCCTTAACTTAATGtttt                                                                                                                                                                                                                                               >  2:578386/1‑299 (MQ=9)                                      tgccTTACAATAGGTTGATTGGTTTGATTGTATGTTTGGTTTACGCTTTGGTTGGCTGGTTACGGTCAGGTGCGGTAAGAGTTGGTGTTTTACGGGAAAGTACGGCGTGGCAAGCCATCGTTAAGGTGTTTAGTCGTATTAAGTGTAATTCGGGGTAGAATTGGTGAAGAGAGTCGTGTAAAAGATCGAGTTCGCAGATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGGGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGag                                                                                                                                                                                                                          <  2:305362/297‑2 (MQ=11)                                                       cttCGTTTGATGTTATGTTTTGTTCTCGCTTTGCTTGGCAGTTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTACTTCGTGGCGAGCCAACGTTAAGCTGTTGAGTCGATTTAATTTTAATTCGGGGCAGAATTGGGCAAGAGAGTCGTGTAAAATATCGAGTTCGACCATCCTGTTGCCTGATAATTTATTTTTCCACATACCATGTGATAATATGACAAACTTGCTATCTACCTAAACTTAATGATTTTTAAACAAAACAGTAGGGGAAGCATCAgctgcatgtgt                                                                                                                                                                                                         >  2:77254/2‑289 (MQ=11)                                                             tttattttttgttTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAAGGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAgg                                                                                                                                                                                                   <  2:277947/290‑1 (MQ=255)                                                                           tGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAAGGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGttt                                                                                                                                                                                     <  1:671091/299‑1 (MQ=255)                                                                               ctcGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAAGGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGc                                                                                                                                                                                 >  1:618379/1‑299 (MQ=255)                                                                                      tggttggCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAAGGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATca                                                                                                                                                                          >  1:564367/1‑299 (MQ=255)                                                                                        gttggCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAAGGCGTGTCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATcaac                                                                                                                                                                        <  1:131918/299‑1 (MQ=255)                                                                                           ggCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAAGGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCaacaac                                                                                                                                                                     >  1:694269/1‑299 (MQ=255)                                                                                           ggCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAAGGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCaacaac                                                                                                                                                                     <  1:482770/299‑1 (MQ=255)                                                                                             aaGGTTACGGCAAAGTTTGTGAAAGGTGAGAGTTTTTAAGTTAAGTAAGGGTTGGAAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGc                                                                                                                                                                   <  2:305750/298‑1 (MQ=17)                                                                                                gTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAAGGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCaa                                                                                                                                                                >  1:649635/1‑299 (MQ=255)                                                                                                         aaGTGCGGTAAGGGTGAGGGTTTTACAGTCAAGTAAGGCGTGGTAAGCCAACGTTAAGCGTGTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCAt                                                                                                                                                       <  2:578147/299‑1 (MQ=17)                                                                                                                                taatataaaGTAGAGCGAGGCAAGCCATGGTGAGTATGTTGAGGCGTTTTAAGGTTAATTGGGGGAAATATTGTTAAAGGATGTTGTTTAAATTGTCGAGTTCGCTGATTTTGTTGTCGGATTATTAATTTTTGGCTAAACCATTTGATCATATGACAATATGTGTATCTAGCTTAACGTAATGATTTTGATAAAAAGCATTAGGGGATTCATCAGGGTAACGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCGAATTGCCTCATCGGTTAACTGATCGCTGGTATaa                                                                                                                                <  2:172291/292‑1 (MQ=255)                                                                                                                                  cAGTCAAGTAAGGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAAcc                                                                                                                              <  1:263301/299‑1 (MQ=255)                                                                                                                                    gTCAAGTAAGGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCtt                                                                                                                            >  1:628126/1‑299 (MQ=255)                                                                                                                                      aaagaaaagggTGGCAAGCCAGCATTAAGGTGGTGGGGTGTGTTAAGTGTAAATCGGGGCGGAATTGGTAAAGAGAGTCGTGTAACATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCAGTTGATGATATGGCAAGATGTGTAGCTACCTTAACTTAATGATTTGGATAAAAATCATTAGGTGATTCATCAGGGTAAAGCATAAAAGTCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCtgtt                                                                                                                          <  2:187036/289‑1 (MQ=18)                                                                                                                                                      aGCGAATGTGAAGCTGTGGAGTCGTTTTGAGTGTAATTCGGGGCAGAATTTGTAAAGAGAGTATGGTAAAATATCGAGTTCGCACATTTTGTTTTCTGATTATTGATTTTTGGCGAAGCCATTTGAGCATATGACAAGATGTGTAACTACCTTGACTTAATGATGTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCGGATATAACCTTTTGCGGGGACACGTTCAc                                                                                                          <  2:596762/299‑1 (MQ=255)                                                                                                                                                          aaCGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACACGTTCACGAtt                                                                                                      <  1:234158/299‑1 (MQ=255)                                                                                                                                                           aCGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACACGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCCTAAGGGGATTCCTCAGGGTAAAGCATAAAAGGCTGGTCAAGTGATTTGGCACGATCAAAAACGCCAATCACCTCATCGGTAAACTGCTCGCTGCTATAAACTTTTGCGGGGACACGGTCGCGAgtt                                                                                                     >  2:205803/1‑299 (MQ=18)                                                                                                                                                                  gCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACACGTTCACGATTTTTGAACa                                                                                              >  1:214761/1‑299 (MQ=255)                                                                                                                                                                    tGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTACCTAACTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACACGTTCACGATTTTTGAACAGt                                                                                            <  1:296818/299‑1 (MQ=255)                                                                                                                                                                         aGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACACGTTCACGATTTTTGAACAGTGAAgg                                                                                       >  1:295417/1‑299 (MQ=255)                                                                                                                                                                             gTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACACGTTCACGATTTTTGAACAGTGAAGGGGAg                                                                                   <  1:81694/299‑1 (MQ=255)                                                                                                                                                                                ttAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACACGTTCACGATTTTTGAACAGTGAAGGGGAGTTg                                                                                <  1:4314/299‑1 (MQ=255)                                                                                                                                                                                         aTTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACACGTTCACGATTTTTGAACAGTGAAGGGGAGTTGTAATATGcc                                                                       >  1:133868/1‑299 (MQ=255)                                                                                                                                                                                                  aGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACACGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACACGTTCACGATTTTTGAACAGTGAAGGGGAGTTGTAATATGCCGTTCCTGCa                                                              >  1:6818/1‑299 (MQ=255)                                                                                                                                                                                                               ggagtgttgtAAAATAGCGAGGTGGCTCATTTTGTTGTGTGATTTTTGATGTTTGGCGAAACAATTTGATCATAGTAAAAGATTTGTATCTTCCTTAAAGTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGGCAAGTGTGTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAAGCTTTTGCGGGGACACGTTCACGATTTTTGAACAGTGAAGGGGAGTTGTAATATGCCGTTCCTGCAGCGTGGAATCCCa                                                 <  2:694269/292‑1 (MQ=255)                                                                                                                                                                                                                 agTCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACACGTTCACGATTTTTGAACAGTGAAGGGGAGTTGTAATATGCCGTTCCTGCAGCGTGGAATCCCATa                                               <  1:42937/299‑1 (MQ=255)                                                                                                                                                                                                                   tCGTGTAAAATATCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACACGTTCACGATTTTTGAACAGTGAAGGGGAGTTGTAATATGCCGTTCCTGCAGCGTGGAATCCCATaaa                                             <  1:564178/299‑1 (MQ=255)                                                                                                                                                                                                                      tgtAAAATATAGATTTCGAACAATTTGTTGTCTTGTTAGTGATTTTTGGCGAAGCCATTTGATCATATGACAAGATGTGTATCTAACTTAACTTAATGATTTTGATAAAAGTCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTAAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACGCGTTCACGATTTTTGAACAGTGAAGGGGAGTTGTAATATGCCGTTCCTGCAGCGTGGAATCCCATAAAGTa                                          <  2:256554/299‑1 (MQ=255)                                                                                                                                                                                                                               tCGAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACACGTTCACGATTTTTGAACAGTGAAGGGGAGTTGTAATATGCCGTTCCTGCAGCGTGGAATCCCATAAAGTAATCAAAGcc                                 <  1:147016/299‑1 (MQ=255)                                                                                                                                                                                                                                cgcgTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATCACCTTTCACGGGAACACGTTCACGAATTTTGAACAGTAAAGGGGAGTTGTAATATGCAGTTCATGCAGCGTGAAACCCCACACATTCATCAATGCCa                                >  2:172862/4‑299 (MQ=25)                                                                                                                                                                                                                                 gAGTTCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACACGTTCACGATTTTTGAACAGTGAAGGGGAGTTGTAATATGCCGTTCCTGCAGCGTGGAATCCCATAAAGTAATCAAAGCCAc                               <  1:256472/299‑1 (MQ=255)                                                                                                                                                                                                                                   gTTCGCAAATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACACGTTCACGATTTTTGAACAGTGAAGGGGAGTTGTAATATGCCGTTCCTGCAGCGTGGAATCCCATAAAGTAATCAAAGCCACgg                             <  1:507826/299‑1 (MQ=255)                                                                                                                                                                                                                                     tCGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTTAAGTGTTTTGGCACGATCAACAAAGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGCAACGTTCACTATTTTTGAACGGTGAAGGGGAGTTGTAATATGCCGTTCCTGCATGGTGGAATCCCATAAAGAAATCAAAGCCACGGtt                           >  2:163048/1‑299 (MQ=37)                                                                                                                                                                                                                                     tCGCAAATTTTGTTGTCTGATTATTTAATTTGTGCGAAACCATGTGATCAGAAGAAAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGTGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACACGTTCACGATTTTTGAACAGTGAAGGGGAGTTGTAATATGCCGTTCCTGCAGCGTGGAATCCCATAAAGTAATCAAAGCCACGGtt                           <  2:284687/299‑1 (MQ=255)                                                                                                                                                                                                                                      cGCACATTTTGTTGTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACACGTTCACGATTTTTGAACAGTGAAGGGGAGTTGTAATCTGCCGTTCCTGCAGCGTGGAATCCCATAAAGTAATCAAATCCCCGGttt                          >  2:235781/1‑299 (MQ=255)                                                                                                                                                                                                                                           attttgttgTCTGATTATTGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACACGTTCACGATTTTTGAACAGTGAAGGGGAGTTGTAATATGCCGTTCCTGCAGCGTGGAATCCCATAAAGTAATCAAAGCCACGGTTTTGAgg                     >  1:469309/4‑299 (MQ=255)                                                                                                                                                                                                                                             tttgttgGTTGATTGTTGATTTTTGGCGAAACCATTTGATCTAAGTACAAGATGTGTATCTACCTTAACTTAAGGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACACGTTCACGATTTTTGAACAGTGAAGGGGAGTTGTAATATGCCGTTCCTGCAGCGTGGAATCCCATAAAGTAATCAAAGCCACGGTTTTGAGGtt                   <  2:649635/298‑1 (MQ=255)                                                                                                                                                                                                                                                        tttatttatTTTTTGGGAAATGATTTGATCATATGAAAAGATGTGTATCTAACTTAGCTTAATGATTTTGGTAAAAATCAGTGGGGGATTCTTCAGGGTAAAGGATAAGAGGCTGGTGAATTGGTTTGGCACGATCAACACCGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACACGTTCACGATTTTTGAACAGTGAAGGGGAGTTGTAATATGCCGTTCCTGCAGCGTGGAATCCCATAAAGTAATCAAAGCCACGGTTGTGAGGTTGCCATGCTTcc        <  2:431087/298‑1 (MQ=255)                                                                                                                                                                                                                                                         ttattGATTTTTGGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCACGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGCGCACACGTTCACGATTTTTAAACAGTGAAGGGGAGTTCTAATATTCCGTTCCTGAAGCGTGGAATCCACTAAAATAATCAAACGCACGGTTTTGAGGATGCCAtttgtccc       >  2:703784/1‑293 (MQ=38)                                                                                                                                                                                                                                                              gATTTTTTTCGAATCCTTTTTATAATATGACAATAGTTTTATCTACCTTAACTTATTTATTTTGATAAAACTCATTAGGGTATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACATCGCCAATTGCCTCATCGGTTAACTGATCGCGGATATAACCTTGTGCGGGGACACGTTCACGATTTTTGAACAGTGAAGGGGAGTTGTAATATGCCGTTCCTGCAGCTTGGAATCCCATAAAGTAATCAAAGCCACGGTTTTGAGGTTGCCATTCTTCCGCAGaa  <  2:344321/299‑1 (MQ=255)                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                                    CGGTATACAGCGAGTCGCTCTTTGTGGAGGTGACGATTACCTAACAATCGGTCGATTCGTTTGATGTTATGTTTTGTTCTCGCTTTGGTTGGCAGGTTACGGCCAAGTTCGGTAAGAGTGAGAGTTTTACAGTCAAGTAATGCGTGGCAAGCCAACGTTAAGCTGTTGAGTCGTTTTAAGTGTAATTCGGGGCAGAATTGGTAAAGAGAGTCGTGTAAAATATCGAGTTCGCACATCTTGTTGTCTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCTACCTTAACTTAATGATTTTGATAAAAATCATTAGGGGATTCATCAGGGTAAAGCATAAAAGGCTGGTCAAGTGTTTTGGCACGATCAACAACGCCAATTGCCTCATCGGTTAACTGATCGCTGATATAACCTTTTGCGGGGACACGTTCACGATTTTTGAACAGTGAAGGGGAGTTGTAATATGCCGTTCCTGCAGCGTGGAATCCCATAAAGTAATCAAAGCCACGGTTTTGAGGTTGCCATTCTTCCGCAGAA  >  CP006584/1645161‑1645712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑