Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006584	1,964,559	G→A	N226N (AAC→AAT)	LY180_09345 ←	transposase IS609

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006584	1,964,559	0	G	A	100.0%	92.1 / NA	50	N226N (AAC→AAT)	LY180_09345	transposase IS609
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (26/24);  total (26/24)

CCGCCACGCCAGAGCTGCTTGTACTCAAGCTGGCGGCG‑CATTTCATACCAGCCCTGATCCAGTATCGAACGGTTTAAACCTGATTTTGCCCGGACATTGCGCCCCGGCTGGCTGACCGTACCCGCTGCTGACTTTGACATGTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTGTTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGCCCGACCATTGATGCTGAAGGGTGAACCGGAGTGGATACTTCACTTTCTGTCTGAATACTGATGTACCACTTACCGCAGGACTGGCTGACAGTGACATTTTTCACAACACCCGTGACCTGACGGCTATTCCGGTAGCGCATCCAGCCCA  >  CP006584/1964278‑1964842                                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                            ccGCCACGCCAGAGCTGCTTGTACTCAAGCTGGCGGCG‑CATTTCATACCAGCCCTGATCCAGTATCGAACGGTTTAAACCTGATTTTGCCCGGACATTGCGCCCCGGCTGGCTGACCGTACCCGCTGCTGACTTTGACATGTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCtt                                                                                                                                                                                                                                                                            <  1:155422/299‑1 (MQ=11)       cgccggagcgcgttGTACCC‑AGCCGGCGGGGCCATTTCGTTCCCGCCCTGAGCCAGTACCGAGCGGTTTAAACCTGATTTTGCCCGGGCATTGGGCCCCGCGTTGCTGACCGTACCCGCTGCTGACTTTGACATGTTGCTGAACTTCAAATCCGCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCt                                                                                                                                                                                                                                                                      <  2:249458/287‑1 (MQ=11)       agctaggtatgctTGGAGTCAGGCGGACGGCG‑CAGTTCCTAGCAGGCCAGAGTCAGTCTCCAACGGATCGGACCGGATGTTGACCTGACAGTGCTCCCCGGCTGGCTCACCGTACCCTCTGCTGACTTTGACCTGTTGCTGACCTTCCAATCCTCAATGACGATCGTGGCGTG‑GTTTGTGCTGAGGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGAGATTTGCGATACGGTAATGCCGGCACTGTATTTTGCGTTTCGGCTTCTGCCAGTTATGGCTGAATTGGACCTTGCGGcg                                                                                                                                                                                                                                                                      <  2:396071/290‑2 (MQ=2)         ccaGAGCTGCTTGTACTCAAGCTGGCGGCG‑CATTTCATACCAGCCCTGATCCAGTATCGAACGGTTTAAACCTGATTTTGCCCGGACATTGCGCCCCGGCTGGCTGACCGTACCCGCTGCTGACTTTGACATGTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTa                                                                                                                                                                                                                                                                    <  1:595587/299‑1 (MQ=14)                tgctTGTACTTAAGCTTGCGGCG‑CATTTCATACCAGCCCTGATCCAGTATCGAACGGTTTAAACCTGATTTTGCCCGGACATTGCGCCCCGGCTGGCTGACCGTACCCGCTGCTGACTTTGACATGATGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCg                                                                                                                                                                                                                                                             <  1:325709/299‑1 (MQ=14)                                        cATTTCATACCAGCCCTGATCCAGTATCGAACGGTTTAAACCTGATTTTGCCCGGACATTGCGCCCCGGCTGGCTGACCGTACCCGCTGCTGACTTTGACATGTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGtcttct                                                                                                                                                                                                                                      >  1:311440/1‑299 (MQ=14)                                         aTTTCATACCAGCCCTGATCCAGTATCGAACGGTTTAAACCTGATTTTGCCCGGACATTGCGCCCCGGCTGGCTGACCGTACCCGCTGCTGACTTTGACATGTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGATATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTg                                                                                                                                                                                                                                     <  1:276371/299‑1 (MQ=14)                                          tttCATACCAGCCCTGATCCAGTATCGAACGGTTTAAACCTGATTTTGCCCGGCCATTCCGCCCAGGCTGGCTGACCGTACCCGCTGCAGACTTTGACATGTTGCTGACCGTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGATGCCGGTTGTTGTGGCTTTATGAAGGTAGTCCCTGCGGATATTTGCGATATGGGACTGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGTCAGTTATTGCGGAATTTTACCTTGCGGCTTAACTGTCGCTCAGGTCCCGCCAGCGCCTTCTgg                                                                                                                                                                                                                                    >  2:483216/1‑299 (MQ=11)                                           ttCATACCAGCCCTGATCCAGTATCGAACGGTTTAAACCTGATTTTGCCCGGACATTGCGCCCCGGCTGGCTGACCGTACCCGCTGCTGACTTTGACATGTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGt                                                                                                                                                                                                                                   >  1:427321/1‑299 (MQ=14)                                                                 acgcgaCGGTTGAATCCTGGTTTTGCCCGGGTGTTAGGCCGCGGCTGTCTGACCGTGCCCGGTGCTGACTGTGGCATGTGGCTGACCTGCAAATCCTCAATGACTATCGTTGCGGG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAgg                                                                                                                                                                                                             <  2:60856/294‑1 (MQ=11)                                                                 aTCGAACGGTTTAAACCTGATTTTGCCCGGACATTGCGCCCCGGCTGGCTGACCGTACCCGCTGCTGACTTTGACATGTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAgg                                                                                                                                                                                                             >  1:692714/1‑299 (MQ=14)                                                                    gAACGGTTTAAACCTGATTTTGCCCGGACATTGCGCCCCGGCTGGCTGACCGTACCCGCTGCTGACTTTGACATGTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGccc                                                                                                                                                                                                          <  1:483216/299‑1 (MQ=14)                                                                      aCGGTTTAAACCTGATTTTGCCCGGACATTGCGCCCCGGCTGGCTGACCGTACCCGCTGCTGACTTTGACATGTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCaa                                                                                                                                                                                                        >  1:139076/1‑299 (MQ=17)                                                                              aaCCTGATTTTGCCCGGACATTGCGCCCCGGCTGGCTGACCGTACCCGCTGCTGACTTTGACATGTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACtgtg                                                                                                                                                                                                >  1:559100/1‑299 (MQ=17)                                                                              aaCCTGATTTTGCCCGGACATTGCGCCCCGGCTGGCTGACCGTACCCGCTGCTGACTTTGACATGTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACtgtg                                                                                                                                                                                                >  1:167625/1‑299 (MQ=17)                                                                                  tGATTTTGCCCGGACATTGCGCCCCGGCTGGCTGACCGTACCCGCTGCTGACTTTGACATGTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCAt                                                                                                                                                                                            >  1:123336/1‑299 (MQ=17)                                                                                  tGATTTTGCCCGGACATTGCGCCCCGGCTGGCTGACCGTACCCGCTGCTGACTTTGACATGTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCAt                                                                                                                                                                                            >  1:111816/1‑299 (MQ=17)                                                                                            cggatatgttgcaccGTCTGCCTGCCCTTACCCGCTGCGTCCTTTGTACTGTTGCTGATCTTGAAATCCTCCATACCTCTCATGTCGTGTATTTTTGCT‑AAGATCGTGGTTACATGATGAAGGTCGTCCTTGCTTATATTTCCGGTACGGGAATGCAGTCGCTGTAGTTTGCGTTTCTGCTGCTGCCAGTTATTGCTGAATTTGACCGTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTGCTGGTTTTTCTGAAAACTGTTTACATGCCCAAAGACTGTGCCATCTGACTGCGt                                                                                                                                                                                  <  2:251646/286‑1 (MQ=2)                                                                                                       tccgatctggctgACCGTACCCGCTGCTGACTTTGACATGTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCAGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAg                                                                                                                                                                       <  1:460139/293‑1 (MQ=17)                                                                                                             ctggctgACCGTACCCGCTGCTGACTTTGACATGTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGCTACGGGACTGCAGTCGCTGTCTTTTGCGTTTCTGCTTCTGCCCGTTATTGCTGAATTTGACCTTGCGGCTTCACTGTCGCTTAAGTATCCCCAGCCTCTTCTGGTTTTTCCGAAACCTGTTTACAGGCCCAACGACTGTCCACTCCTCCAGCGTGGCTAATCTAACCACGc                                                                                                                                                                 >  2:256413/1‑299 (MQ=11)                                                                                                                     ccGTACCCGCTGCTGACTTTGACATGTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATcc                                                                                                                                                         <  1:62083/299‑1 (MQ=17)                                                                                                                         aCCCGCTGCTGACTTTGACATGTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGcc                                                                                                                                                     >  1:132793/1‑299 (MQ=17)                                                                                                                              ctgctgACTTTGACATGTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGCCCGatc                                                                                                                                                <  1:109703/299‑3 (MQ=17)                                                                                                                                             tGTTGCTGTCCTTTAAATCCTCAATGTCTATCCTTGCGTG‑GTTTTTTCGGACGGTCGTTGTGACTTTATGAAGGTAGTTCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGGCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGCCCGATCATTGATGCTGAAggg                                                                                                                                 <  2:559100/299‑1 (MQ=11)                                                                                                                                              gTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGc                                                                                                                                                                                                                                             >  1:50074/1‑190 (MQ=14)                                                                                                                                              gTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGc                                                                                                                                                                                                                                             <  2:50074/190‑1 (MQ=14)                                                                                                                                              gTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGCCCGATCATTGATGCTGAAGGGt                                                                                                                                >  1:535113/1‑299 (MQ=17)                                                                                                                                                tGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCg                                                                                                                                                                                                                                            <  2:458074/189‑1 (MQ=14)                                                                                                                                                tGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCg                                                                                                                                                                                                                                            >  1:458074/1‑189 (MQ=14)                                                                                                                                                 gCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGCCCGATCATTGATGCTGAAGGGTGaa                                                                                                                             <  1:526181/299‑1 (MQ=17)                                                                                                                                                        gtCAAATCCTCAAGATCTGTCCTGGCGTG‑TTTTTGTCTGACGGTGGTTGTGGTGTTAGGAAGGTAGTTCCGTGGTATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTTCCAGTTATTGCTGAATTTGACCTTGCTGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGCCCGATCATTGATGCTGAAGGGTGAACCGGAGt                                                                                                                      <  2:111816/298‑1 (MQ=11)                                                                                                                                                              tCCTCAATGACTAGCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGCCCGATCATTGATGCTGAAGGGTGAACCGGAGTTGATAc                                                                                                                <  1:544577/299‑1 (MQ=17)                                                                                                                                                                   aaTGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGCCCGATCATTGATGCTGAAGGGTGAACCGGAGTTGATACTTCAc                                                                                                           >  1:308782/1‑299 (MQ=17)                                                                                                                                                                                   tG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGCCCGATCATTGATGCTGAAGGGTGAACCGGAGTTGATACTTCACTTTCTGTCTGAATACt                                                                                           >  1:131086/1‑299 (MQ=17)                                                                                                                                                                                                     cGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGCCCGATCATTGATGCTGAAGGGTGAACCGGAGTTGATACTTCACTTGCTGTCTGAATACTGATGTACCACTTACCGc                                                                          >  1:41942/1‑299 (MQ=17)                                                                                                                                                                                                         gtgACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCCCGCCAGCATCCAGCCCGATCATTGATGCTAAAGGGTGAACCGGAGTGGATACTTCACTTTCTGTCTGAATACCTATTTACCATTTAACGCACGa                                                                      >  2:352043/1‑299 (MQ=11)                                                                                                                                                                                                               ttATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGCCCGATCATTGATGCTGAAGGGTGAACCGGAGTTGATACTTCACTTTCTGTCTGAATACTGATGTACCACTTACCGCAGGACTGGCt                                                                >  1:359277/1‑299 (MQ=17)                                                                                                                                                                                                                     aGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTATTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCTAGGTTAGCCACGCCAGCATCCACCCCAACCCTTGATGCTGAAGGGTGAACCGCAGTCGATCTTCCCCTTTCCGTCTGAATACTAATGCACCACCTCCCGCAGTCCCGGCTcacacg                                                          >  2:625921/1‑297 (MQ=11)                                                                                                                                                                                                                      ggtgttaccgcgttatatGTGCGCTACGGTAATGCTGTGGTGTTCTTTTGGTTTTCTGCTTCTGCCAGTTATTTCTGACTTTGTCCTTGCGGCTTAACTGTCGCTGAAGTATCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCCAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGCCCGATCATTTATGCTGAAGGGTGAACCGGAGTTGATACTTCACTTTCTGTCTGAATACTGATGTACCACTTACCGCAGGACTGGCTGACCGTg                                                         <  2:334830/285‑1 (MQ=11)                                                                                                                                                                                                                                                  ggAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTTGTTTTTCTGAAAACTGTTTACAGGCCCAAAGATTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCATCCCGATCATTGATGCTGAAGGGTGAACCGGAGTTGATACTTCACTTTCTGTCTGAATACTGATGTACCACTTACCGCAGGACTGGCTGACCGTGACATTTTTCACAACACCCGTGACCTGAc                             <  1:263418/299‑1 (MQ=9)                                                                                                                                                                                                                                                      tGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAg                                                                                                                                                              >  2:88002/1‑166 (MQ=14)                                                                                                                                                                                                                                                      tGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAg                                                                                                                                                              <  1:88002/166‑1 (MQ=14)                                                                                                                                                                                                                                                        cAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGCCCGATCATTGATGCTGAAGGGTGAACCGGAGTTGATACTTCACTTTCTGTCTGAATACTGATGTACCACTTACCGCAGGACTGGCTGACCGTGACATTTTTCACAACACCCGTGACCTGACGGCTAt                       <  1:256413/299‑1 (MQ=14)                                                                                                                                                                                                                                                         aGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGCCAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGCCCGATCATTGATGCTGAAGGGTGAACCGGAGTTGATACTTCACTTTCTGTCTGAATTCTGATGTACCCCTTACCGCAGGACTGGCTGCCCTTGCCATTTTTCACCACACCCGTCACCTGACTGccttt                      >  2:344341/1‑295 (MQ=11)                                                                                                                                                                                                                                                                gTATTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGCCCGATCATTGATGCTGAAGGGTGAACCGGAGTTGATACTTCACTTTCTGTCTGAATACTGATGTACCACTTACCGCAGGACTGGCTGACCGTGACATTTTTCACAACACCCGTGACCTGACGGCTATTCCGGTAg               >  1:43648/1‑299 (MQ=14)                                                                                                                                                                                                                                                                  aTTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGCCCGATCATTGATGCTGAAGGGTGAACCGGAGTTGATACTTCACTTTCTGTCTGAATACTGATGTACCACTTACCGCAGGACTGGCTGACCGTGACATTTTTCACAACACCCGTGACCTGACGGCTATTCCGGTAgcg             <  1:509787/299‑1 (MQ=14)                                                                                                                                                                                                                                                                  aTTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGCCCGATCATTGATGCTGAAGGGTGAACCGGAGTTGATACTTCACTTTCTGTCTGAATACTGATGTACCACTTACCGCAGGACTGGCTGACCGTGACATTTTTCACAACACCCGTGACCTGACGGCTATTCCGGTAgcg             >  1:38463/1‑299 (MQ=14)                                                                                                                                                                                                                                                                  aTTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGAGGCGAGTTTAGCCACGCCAGCATCCAGCCCGATCAt                                                                                                                                              <  1:518429/170‑1 (MQ=9)                                                                                                                                                                                                                                                                  aTTTTGCGTTTCTGCTTCTGCCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGAGGCGAGTTTAGCCACGCCAGCATCCAGCCCGATCAt                                                                                                                                              >  2:518429/1‑170 (MQ=9)                                                                                                                                                                                                                                                                             ctgcttctgcCAGTTATTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGCCCGATCATTGATGCTGAAGGGTGAACCGGAGTTGATACTTCACTTTCTGTCTGAATACTGATGTACCACTTACCGCAGGACTGGCTGACCGTGACATTTTTCACAACACCCGTGACCTGACGGCTATTCCGGTAGCGCATCCAGCCCa  >  1:350464/1‑299 (MQ=14)                                                                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                                                            CCGCCACGCCAGAGCTGCTTGTACTCAAGCTGGCGGCG‑CATTTCATACCAGCCCTGATCCAGTATCGAACGGTTTAAACCTGATTTTGCCCGGACATTGCGCCCCGGCTGGCTGACCGTACCCGCTGCTGACTTTGACATGTTGCTGACCTTCAAATCCTCAATGACTATCATTGCGTG‑GTTTTTGCTGACGGTCGTTGTGACTTTATGAAGGTAGTCCCTGCGGATATTTGCGATACGGGAATGCAGTCGCTGTATTTTGCGTTTCTGCTTCTGCCAGTTGTTGCTGAATTTGACCTTGCGGCTTAACTGTCGCTGAAGTCTCGCCAGCGTCTTCTGGTTTTTCTGAAAACTGTTTACAGGCCCAAAGACTGTGCCATCTGACAGCGTGGCGAGTTTAGCCACGCCAGCATCCAGCCCGACCATTGATGCTGAAGGGTGAACCGGAGTGGATACTTCACTTTCTGTCTGAATACTGATGTACCACTTACCGCAGGACTGGCTGACAGTGACATTTTTCACAACACCCGTGACCTGACGGCTATTCCGGTAGCGCATCCAGCCCA  >  CP006584/1964278‑1964842

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑