| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006584 | 3,010,362 | G→T | E48* (GAA→TAA) | LY180_14330 → | type VI secretion protein ImpK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006584 | 3,010,362 | 0 | G | T | 96.4% | 180.9 / NA | 59 | E48* (GAA→TAA) | LY180_14330 | type VI secretion protein ImpK |
| Reads supporting (aligned to +/- strand): ref base G (1/0); major base T (30/24); minor base C (1/1); total (34/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCGCTGCGACTGGAGAACCAGTATTTTGCGCTGGATATGCACAGTGACGCGGCTAAATCGATGCTGGAGTCCGGGTGCTGCATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCGAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCATTTCTTCAACACCCTGCAGGCAGGCGAGCTGCTGTACGAGCGGATGAAGCAGGTGTTGCAGGAGCCCGCGCCTGCACAGGCTGTGCTGACCTGCTTTCA‑CCGTGTCCTGCTGCTGGGATTTCGCGGGCGTTATCAGGATCCGGTGG > CP006584/3010078‑3010653 | ccgctgcGACTGGAGAACCAGTATTTTGCGCTGGATATGCACAGTGACGCGGCTAAATCGATGCTGGAGTCCGGGTGCTGCATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGAt < 1:312115/299‑1 (MQ=255) cgctgcGACTGGAGAACCAGTATTTTGCGCTGGATATGCACAGTGACGCGGCTAAATCGATGCTGGAGTCCGGGTGCTGCATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATg < 1:186916/299‑1 (MQ=255) cGACTGGAGAACCAGTATTTTGCGCTGGATATGCACAGTGACGCGGCTAAATCGATGCTGGAGTCCGGGTGCTGCATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCggg < 1:364408/299‑1 (MQ=255) aCTGGAGGCACAGTATTGTGCGCTGGTTATGCCCAGTGACGCGGGTAAATGGATGCGGGGGTCCGGGTGGTGCGTGAGTTATGCGCCAGGAACCATGGGCGACCGGAAACTTGAACTGGTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGAAACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGtt < 2:715035/299‑1 (MQ=255) cTGGAGAACCAGTATTTTGCGCTGGATATGCACAGTGACGCGGCTAAATCGATGCTGGAGTCCGGGTGCTGCATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGttt > 1:363594/1‑299 (MQ=255) tGGAGAACCAGTATTTTGCGCTGGATATGCACAGTGACGCGGCTAAATCGATGCTGGAGTCCGGGTGCTGCATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTa > 1:88526/1‑299 (MQ=255) aaCCAGTATTTTGCGCTGGATATGCACAGTGACGCGGCTAAATCGATGCTGGAGTCCGGGTGCTGCATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCgg > 1:142002/1‑299 (MQ=255) ccAGTATTTTGCGCTGGATATGCACAGTGACGCGGCTAAATCGATGCTGGAGTCCGGGTGCTGCATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGCCGGATATCAATATCGCCGCGCTGCTGCGCGACACGTTTCTGACGGGGGTGGCACTGCGTCAGGGAACCACCGTACGCCCCGGACGGGAGCGGTATCGTCCCTGCCAGCGGCAGGGGGAACCGGTCCCCAAACGCCTACACGATGCCGGGTCTAGCCGGga > 2:33556/1‑299 (MQ=255) cAGTATTTTGCGCTGGATATACACAGTGACGCGGCTAAATCGATGCTGGAGTCCGGGTGCTGCATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGAAGGTGGAACTGGTCAGCTAACGCCTGAAAGATGCCGGGATTAGCCGGgag > 1:292258/1‑299 (MQ=255) gTAGTTTGCGCTGGATATGCACAGTGACGCGGCTAAATCGCTGCTGGAGTCCGGGTGCTGCATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGagag < 1:716312/299‑1 (MQ=255) gcgcTGGAGATGCACAGTGACGCGGCTAAATCGATGCTGGGGTCCGGGTGCTGCATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAg < 1:42101/299‑1 (MQ=255) cacaGTGACGCGGCTAAATCGATGCTGGAGTCCGGGTGCTGCATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGGGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCCGGGAACCACCGTGCGTCACGGTATGGGGCTGAAGCGTCACTGCCCGCGGCAGGCGGAACCGGGCCCCAAACGCCTGAACTATCCCGGGGTTCGCCGGGTGAGGGGGGGGCCCCTGACCTAc > 2:505098/1‑299 (MQ=255) caGTGACGTGGTTAAATCGATGCTGGAGTCCGGGTGCTGCATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCGGAACTTTTGGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTAcgc < 1:38031/299‑1 (MQ=255) ggagagtgATGGTGGGGTCCGGGTGCGGCATGGTTTATGGGCTGGGGTGCATGGTGGGACTGAAAACTGAACTGTGTGCTGTGCTGCGCGCATGAAAAAAGAGATGGATAACAATATCGAGGGGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGGACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGGCGGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTgcgcac < 2:237493/292‑3 (MQ=255) cTAAATCGATGCTGGAGTCCGGGTGCTGCATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGccc < 1:317787/299‑1 (MQ=255) tAAATCGATGCTGGAGTCCGGGTGCTGCATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCct > 1:565321/1‑299 (MQ=255) tAAATCGATGCTGGAGTCCGGGTGCTGCATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCct < 1:335525/299‑1 (MQ=255) aTCGATGCTGGAGTCCGGGTGCTGCATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCctgct > 1:212612/1‑299 (MQ=255) ccGATGCTGGAGTCCGGGTGCTGCATGATTTATGCGCCAGGAACCATTGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCCTGCAAAACGAGACGGATATCCATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGCGGAACCGCGTCCGGCAACCACCGTGCGTCACGGTCCTGCCGTGGATCCGCACTGCCAGCGGCAGGTGCCACGCGTCCGCCCACGCCCGAAAGATGCCCGGTTCAGCCGGGAGCGCCCAGGCCACCTTCCCTACGCGCCGTGCTCCccgcct > 2:235245/2‑297 (MQ=255) gATGCTGGAGTCCGGGTGCTGCATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAATAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGa > 1:671613/1‑299 (MQ=255) ggggccgggggtggcATGATTTAAGTGACGGGAACCAGGGGCGACCGGAAGCCTGAACGGTTTGGGGTGCGGCGGAGATGAAAAACGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTGCTGAGGGGGGTGGAACTGCGCAAGGGAACCACCGTGCTTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACa < 2:104627/286‑1 (MQ=255) gtgggggaTGATTTTGGGGCCAGGAACCAAGGGCGACGTGAAACCTTCACTGGTTGGGGTGCTGCGCGCATGAAAAAAGGGTCGGATATCAATAGCGACGCGCTGCTGCGCGACACGTTTCTGTCGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGATGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAg < 2:363594/292‑1 (MQ=255) ctgcATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCg > 1:658904/1‑299 (MQ=255) gcATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCCCTGCCATCGGCCGGTGGAACGGGTCCGCTAACGCCGGAAAGATGCCGGGCTTAGCCGGGAGGGCGTCGAGCCCCATACCTACCCGCCGGCCGCCCCGCTGGCCGGAAccagccaggcccgcc > 2:594046/1‑285 (MQ=255) aGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACgg > 1:428263/1‑299 (MQ=255) aaCCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGCCACGTTTCTGACGGTGGTGGAACTGCGTCCGGGAACCACCGTGCGTCACGGTCTGGAGCTGTATCGTCACTGCCCGCGGCCGGTGGAACTGGTCCGCTAACGCCTGAAAGCTGCCGGGTTTAGCCGGGCGGGCGTGGAGCCACTTACCCACCCGCAGTGCGCCCCGCCGCACGACACACGCCTGAGTCCCCGCGCCCTGgacgccaccca > 2:173621/1‑292 (MQ=255) aCCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAg > 1:100180/1‑299 (MQ=255) gACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTgg < 1:464682/299‑1 (MQ=255) tgaaacctgaaCTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCGGGCCATCTGGATGa > 1:669774/1‑299 (MQ=255) aaCTGTTTGCGGTGCTGCGCGCATGAAAAACGAGACGGATATCCATATCGACGCCCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGCCACGGTATGGAGCTGTAGCGTCACTGCCAGCGGCAGCTGGCACTGGTCCGCGCACGCCTGAAAGACTCCTGGGTTAGCCGGCAGAGCGGTGATCCCATTACCTACCCGCAGTCTGCCCTCGCCGACCACACCGCCCTGACTCCGAACGGCAGGCCCGCCGGTCAGGACATCTCGACGCAGGagcacc > 2:407502/1‑294 (MQ=255) aCTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACt > 1:125945/1‑299 (MQ=255) gTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCa > 1:228805/1‑299 (MQ=255) tttGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAg < 1:661413/299‑1 (MQ=255) cGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGc > 1:541412/1‑299 (MQ=255) tgctgcGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCAtt > 1:690112/1‑299 (MQ=255) gcgcgcATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCATttctt < 1:608740/299‑1 (MQ=255) cgcATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCATTTCTTCaa > 1:272653/1‑299 (MQ=255) gagaCGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCTGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGGCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCATTTCTTCAACACCCTgcaggc > 1:512412/1‑299 (MQ=255) gcGGGTATCAATGTCGGCGGGCGGCTGCGCGACACGTTTCTGAGGGTGGTGGAACTGCGTCGGGGAACCACCGTGGGTCACGGTATGGGGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCATTTCTTCAACACCCTGcaggcagg < 2:142002/298‑1 (MQ=255) aCGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCATTTCTTCAACACCCTGcaggcagg > 1:297578/1‑299 (MQ=255) ttatCAATGTCGCCGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGGGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCATTTCTTCAACACCCTGCAGGCAGGCGAg < 1:708244/298‑1 (MQ=255) cgcgCTGCTGCGCGACACGTTTCTGACGGTGTTGGAACTGCGCCAGGGCACCACCGTGCGTCACGGTCTGGAGCTGTATCGGCACGGCCAGCGACAGGTGGAACTGCTCCGCTAACGCCCGACAGATGCCGCGTTGATCCGGGAGACCGCGTCCCCCATTACCTACGCGCAGCGCGCCCTGCTGGACCAAACCCACCCGAGTCGCCGCGCCATGGACGACGGCCCGCGCATCACGCTAAAGAGACCCCCCAACCCGCATTTGTTCCACACCCTGCAGACGGGCGCGCTACTCTAcccac > 2:508078/1‑295 (MQ=255) cgttgctgcGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCATTTCTTCAACACCCTGCAGGCAGGCGAGCTGCTGGACGCGCgg > 1:18649/4‑299 (MQ=255) cgACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCATTTCTTCAACACCCTGCAGGCAGGCGAGCTGCTGTACGAGCGGATGAAGCAgg < 1:469438/299‑1 (MQ=255) cacGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTCCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGACGGATCCACTCCAGTCGCATTCCTTCAACACCCTGCAGGCAGGCGACCTGCGGTACGAGCGGATGAAGGCGgtgt > 2:71052/1‑299 (MQ=255) acGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCATTTCTTCAACACCCTGCAGGCAGGCGAGCTGCTGTACGAGCGGATGAAGCAGGTGtt < 1:594046/299‑1 (MQ=255) gACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCATTTCTTCAACACCCTGCAGGCAGGCGAGCTGCTGTACGAGCGGATGAAGCAGGTGTTGCAGGAGc > 1:472150/1‑299 (MQ=255) ggtggtGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCATTTCTTCAACACCCTGCAGGCAGGCGAGCTGCTGTACGAGCGGATGAAGCAGGTGTTGCAGGAGCCcg > 1:504613/1‑299 (MQ=255) aGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCATTTCTTCAACACCCTGCAGGCAGGCGAGCTGCTGTACGAGCGGATGAAGCAGGTGTTGCAGGAGCCCGCGCCTGCACAGGCtgtg < 1:33556/299‑1 (MQ=255) accGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGCACTGGTCCGCTAACGCCTGAAAGATCCCGGGTTTAGCCGGGCCAGCGTGCAGCACATTACCTCCGCGCAGTGCGCCCTTCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGCACGACGCGCAGGCCACCTGCCTGAAGCATCACCTCCAGACCCCTCTCTTCCCCACCCTCCCCGCAGACGCGCTGCCGTACGCGCGGCAGAACCAGGGGTTCCACGCGCCCGCGCCCGCCCAGCCtcggagtgccct > 2:663192/1‑288 (MQ=255) tCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCATTTCTTCAACACCCTGCAGGCAGGCGAGCTGCTGTACGAGCGGATGAAGCAGGTGTTGCAGGAGCCCGCGCCTGCACAGGCTGTGCTGACCTGCTTTCA‑cc < 1:71052/299‑1 (MQ=255) tATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCCGGCCATCCGGCTGAAGGATCCACTCCAGTCGCATTTCTTCAACACCCTGCAGGCAGGCGAGCTGCTGACCGAGCGGAGGAAGCAGGTGTTTCAGGAGACCCCCCCCGCACCGCGCGTGCTCACATGGCTTCACCCGTGTccgacccggtc > 2:644062/1‑290 (MQ=255) gCGGCAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCATTTCTTCAACACCCTGCAGGCAGGCGAGCTGCTGTACGAGCGGATGAAGCAGGTGTTGCAGGAGCCCGCGCCTGCACAGGCTGTGCTGACCTGCTTTCA‑CCGTGTCCTGCTGCTGGGATTTCGCGGGCGtt < 1:478290/299‑1 (MQ=255) cAGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCATTTCTTCAACACCCTGCAGGCAGGCGAGCTGCTGTACGAGCGGATGAAGCAGGTGTTGCAGGAGCCCGCGCCTGCACAGGCTGTGCTGACCTGCTTTCA‑CCGTGTCCTGCTGCTGGGATTTCGCGGGCGTTATCa > 1:335154/1‑299 (MQ=255) aGGTGGAACTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTACGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCATTTCTTCAACACCCTGCAGGCAGGCGAGCTGCTGTACGAGCGGATGAAGCAGGTGTTGCAGGAGCCCGCGCCTGCACAGGCTGTGCTGACCTGCTTTCA‑CCGTGTCCTGCTGCTGGGATTTCGCGGGCGTTATCAg < 1:505098/299‑1 (MQ=255) caaCTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGACACAGTCCTGCGTCGCAGCGGCATGGACGCCGGTCAGGCCATCTGGATGAAGGCTCCCCCCCAGTCGCATTCCTCCAACACCCTGCCGCCAGGCGAGCCCCTGTACGAGCGCATGAAGCCGCCGTTGCAGGCGCCCGCGCCTCCACAGGCTCTGCTGCCCTGCCTTCC‑CCGTGTCCTCCCCCGGCGCTTTcgcgcgcgccttcagggccc > 2:87343/2‑287 (MQ=255) aCTGGTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCATTTCTTCAACACCCTGCAGGCAGGCGAGCTGCTGTACGAGCGGATGAAGCAGGTGTTGCAGGAGCCCGCGCCTGCACAGGCTGTGCTGACCTGCTTTCA‑CCGTGTCCTGCTGCTGGGATTTCGCGGGCGTTATCAGGATCCgg < 1:111594/299‑1 (MQ=255) aCTGGGCCGCCAGAGCCGGAAAGGTGCGGGGTGTGGCCGGGGGGGCGTGGGGCACATTACCGACGCGGAGTGCGCGCGGCTGGACGAGACAGTCCTGGGGCGCAGCGGCAGGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTGGCATTTCTTCAACGCCCTGCAGGCAGGCGAGCTGCTGTACGAGCGGATGAAGCAGGTGTTGCAGGAGCCCGCGCCTGCACAGGCTGTGCTGACCTGCTTTCA‑CCGTGTCCTGCTGCTGGGATTTCGCGGGCGTTATCAGGATCCgg < 2:249181/299‑1 (MQ=255) ggTCCGCTAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCATTTCTTCAACACCCTGCAGGCAGGCGAGCTGCTGTACGAGCGGATGAAGCAGGTGTTGCAGGAGCCCGCGCCTGCACAGGCTGTGCTGACCTGCTTTCA‑CCGTGTCCTGCTGCTGGGATTTCGCGGGCGTTATCAGGATCCGGTgg > 1:206810/1‑299 (MQ=255) | CCGCTGCGACTGGAGAACCAGTATTTTGCGCTGGATATGCACAGTGACGCGGCTAAATCGATGCTGGAGTCCGGGTGCTGCATGATTTATGCGCCAGGAACCATGGGCGACCTGAAACCTGAACTGTTTGCGGTGCTGCGCGCATGAAAAAAGAGACGGATATCAATATCGACGCGCTGCTGCGCGACACGTTTCTGACGGTGGTGGAACTGCGTCAGGGAACCACCGTGCGTCACGGTATGGAGCTGTATCGTCACTGCCAGCGGCAGGTGGAACTGGTCCGCGAACGCCTGAAAGATGCCGGGTTTAGCCGGGAGAGCGTGGAGCACATTACCTACGCGCAGTGCGCCCTGCTGGACGAAACAGTCCTGAGTCGCAGCGGCATGGACGACGGTCAGGCCATCTGGATGAAGGATCCACTCCAGTCGCATTTCTTCAACACCCTGCAGGCAGGCGAGCTGCTGTACGAGCGGATGAAGCAGGTGTTGCAGGAGCCCGCGCCTGCACAGGCTGTGCTGACCTGCTTTCA‑CCGTGTCCTGCTGCTGGGATTTCGCGGGCGTTATCAGGATCCGGTGG > CP006584/3010078‑3010653 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |