New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006584	294480 =	17 (0.610)	16 (0.640)	16/518	0.6	57.1%	coding (26/996 nt)	LY180_01335	hypothetical protein
	?	CP006584	297564 =	9 (0.360)					coding (496/1515 nt)	LY180_01350	tail protein

TCCCATTTAAGATTCATCAGGTCTTTTGTTGTGGTGCTTTGTTTGCTTCTCCATTTGAAATATTCATTGCCGTTGTCGCCTGTTTCAAACCACATGTATGAATCAGTGTCGCTGTCGGCATCATTTTTAAATCCAATCTTTGCCCAGTCAGTATTTCGAATCCAGGCAAGGATTGAGTCGTTTTCAAAAGTAAGCCCACCGGACAAGGTATCGCCATTCTTTTGCACGGCGTTCCTAGCCCTGTTTACCGTTTCCTGTAAACCGAGGTTTTGGATAAACAGCGGCTTATTGGGAATATCTGCTCCGTTCCGGTCTTTTGCCAGACGGGCATTGGCATTATCCATTGCAATTTTCACCGCTTTTGCGGTGGCTGCCAGCGTTTCACTGGGGCTGTCAGTGGCACTGGTTAGCTGAACGAGTCCTTTTTTGTTCAGGCTGGCATCATAGATATCCAGATTTTCACGTGCTGTACGCTGTGCTGATGCCCCGGCAGTTTTAATTTCGCTGAGGTTATTTTTTATCAGCAGCGCGTTATTGCT  >  CP006584/297287‑297825                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                      tCCCATTTAAGATTCATCAGGTCTTTTGTTGTGGTGCTTTGTTTGCTTCTCCATTTGAAATATTCATTGCCGTTGTCGCCTGTTTCAAACCACATGTATGAATCAGTGTCGCTGTCGGCATCATTTTTAAATCCAATCTTTGCCCAGTCAGTATTTCGAATCCAGGCAAGGATTGAGTCGTTTTCAAAAGTAAGCCCACCGGACAAGGTATCGCCATTCTTTTGCACGGCGTTCCTAGCCCTGTTTACCGTTTCCTGTAAACCGAGGTTTTGGATAAACAGCGGCTTATTGGGAatat                                                                                                                                                                                                                                                   >  1:201848/1‑298 (MQ=255)      tgtaatgaccttattgtttgcataagcccatgagcctttgcacatccagtaaggatggttaaatgccccctgactctccagccacgaaataaattgtgcggttgtccagacctgactatcgccaccaatattcagccatgcgctatatgcgcgacaggccccaatatttttggtgaaggtatcttttcctggaatatctgcgccgttctggttttgctgtaatgcgccagaagcctgatttaccgtttcctgtaaaccgaggttttggataaACAGCGGCTTATTGGGAATATCTGCt                                                                                                                                                                                                                                              <  1:332817‑M2/26‑1 (MQ=255)            gaccttattgtttgcataagcccatgagcctttgcacatccagtaaggatggttaaatgccccctgactctccagccacgaaataaattgtgcggttgtccagacctgactatcgccaccaatattcagccatgcgctatatgcgcgacaggccccaatatttttggtgaaggtatcttttcctggaatatctgcgccgttctggttttgctgtaatgcgccagaagcctgatttaccgtttcctgtaaaccgaggttttggataaACAGCGGCTTATTGGGAATATCTGCTCCGTTc                                                                                                                                                                                                                                        <  1:276511‑M2/32‑1 (MQ=255)               cttattgtttgcataagcccatgagcctttgcacatccagtaaggatggttaaatgccccctgactctccagccacgaaataaattgtgcggttgtccagacctgactatcgccaccaatattcagccatgcgctatatgcgcgacaggccccaatatttttggtgaaggtatcttttcctggaatatctgcgccgttctggttttgctgtaatgcgccagaagcctgatttaccgtttcctgtaaaccgaggttttggataaACAGCGGCTTATTGGGAATATCTGCTCCGTTCCgg                                                                                                                                                                                                                                     <  1:7942‑M2/35‑1 (MQ=255)                               gcccatgagcctttgcacatccagtaaggatggttaaatgccccctgactctccagccacgaaataaattgtgcggttgtccagacctgactatcgccaccaatattcagccatgcgctatatgcgcgacaggccccaatatttttggcgaaggtatcttttcctggaatatctgcgccgttctggttttgctgtaatgcgccagaagcctgatttaccgtttcctgtaaaccgaggttttggataaACAGCGGCTTATTGGGAATATCTGCTCCGTTCCGGTCTTTTGCCAGACggg                                                                                                                                                                                                                     <  1:59540‑M2/51‑1 (MQ=255)                                 ccatgagcctttgcacatccagtaaggatggttaaatgccccctgactctccagccacgaaataaattgtgcggttgtccagacctgactatcgccaccaatattcagccatgcgctatatgcgcgacaggccccaatatttttggtgaaggtatcttttcctggaatatctgcgccgttctggttttgctgtaatgcgccagaagcctgatttaccgtttcctgtaaaccgaggttttggataaACAGCGGCTTATTGGGAATATCTGCTCCGTTCCGGTCTTTTGCCAGACGggca                                                                                                                                                                                                                   >  1:80442‑M2/246‑298 (MQ=255)                                                  tccagtaaggatggttaaatgccccctgactctccagccacgaaataaattgtgcggttgtccagacctgactatcgccaccaatattcagccatgcgctatatgcgcgacaggccccaatatttttggtgaaggtatcttttcctggaatatctgcgccgttctggttttgctgtaatgcgccagaagcctgatttaccgtttcctgtaaaccgaggttttggataaACAGCGGCTTATTGGGAATATCTGCTCCGTTCCGGTCTTTTGCCAGACGGGCATTGGCATTATCCATTGc                                                                                                                                                                                                  >  1:224924‑M2/229‑298 (MQ=255)                                                     attaaggtggttaaaatgccccctgactctccaaccacgaaatatatggggcgggtgtccagacctgcagatcgcaacaactttccggccatgcgctatatgcgcgacaggccccaatatttttggtgaatgtatcttttcctggaatatctgcgccgttctggttttgctgtaatgcgccagaagcctgatttaccgtttcctgtaaaccgaggttttggataaACAGCGGCTTATTGGGAATATCTGCTCCGTTCCGGTCTTTTGCCAGACGGGCATTGGCATTATCCATTGCAAt                                                                                                                                                                                               <  2:305297‑M2/73‑1 (MQ=255)                                                        aaggatggttaaatgccccctgactctccagccacgaaataaattgtgcggttgtccagacctgactatcgccaccaatattcagccatgcgctatatgcgcgacaggccccaatatttttggtgaaggtatcttttcctggaatatctgcgccgttctggttttgctgtaatgcgccagaagcctgatttaccgtttcctgtaaaccgaggttttggataaACAGCGGCTTATTGGGAATATCTGCTCCGTTCCGGTCTTTTGCCAGACGGGCATTGGCATTATCCATTGCaattag                                                                                                                                                                                            >  1:305297‑M2/223‑296 (MQ=255)                                                           aaTATTCAGTTCCGTTGTCGCCTTTTTCTAACCACATGTATGAATCAGTGTCGATGTTGGCATCATTTTTAAATCCAATCTTTGCCCAGTCAGTATTTCTAATCCAGGCAAGGATTGAGTCGTTTTCAAAAGTAAGCCCACCGGACAAGGTATCGCCATTCTTTTGCACGGCGTTCCTAGCCCTGTTTACCGTTTCCTGTAAACCGAGGTTTTGGATAAACAGCGGCTTATTGGGAATATCTGCTCCGTTCCGGTCTTTTGCCAGACGGGCATTGGCATTATCCATTGCAATTTTCAc                                                                                                                                                                                         <  2:335737/298‑1 (MQ=255)                                                               gttaaatgccccctgactctccagccacgaaataaattgtgcggttgtccagacctgactatcgccaccaatattcagccatgcgctatatgcgcgacaggccccaatatttttggtgaaggtatcttttcctggaatatctgcgccgttctggttttgctgtaatgcgccagaagcctgatttaccgtttcctgtaaaccgaggttttggataaACAGCGGCTTATTGGGAATATCTGCTCCGTTCCGGTCTTTTGCCAGACGGGCATTGGCATTATCCATTGCAATTTTCACCGCt                                                                                                                                                                                     <  1:121439‑M2/83‑1 (MQ=255)                                                                             gactctccagccacgaaataaattgtgcggttgtccagacctgactatcgccaccaatattcagccatgcgctatatgcgcgacaggccccaatatttttggtgaaggtatcttttcctggaatatctgcgccgttctggttttgctgtaatgcgccagaagcctgatttaccgtttcctgtaaaccgaggttttggataaACAGCGGCTTATTGGGAATCTCTGCTCCGTTCCGGTCTTTTGCCAGACGGGCTTTGGCATTTTCCTTTGCCTTTTTAACCGCTTTTTCGGGGGGTGc                                                                                                                                                                       >  2:30603‑M2/202‑298 (MQ=255)                                                                                            acaTGTATGAATCAGTGTCGCTGTCGGCATCATTTTTAAATCCAATCTTTGCCCAGTCAGTATTTCGAATCCAGGCAAGGATTGAGTCGTTTTCAAAAGTAAGCCCACCGGACAAGGTATCGCCATTCTTTTGCACGGCGTTCCTAGCCCTGTTTACCGTTTCCTGTAAACCGAGGTTTTGGATAAACAGCGGCTTATTGGGAATATCTGCTCCGTTCCGGTCTTTTGCCAGACGGGCATTGGCATTATCCATTGCAATTTTCACCGCTTTTGCGGTGGCTGCCAGCGTTTCACTggg                                                                                                                                                        >  1:120415/1‑298 (MQ=255)                                                                                                aatttggccggttttccagacctgtctatccccaccaatattcagccatgtgatatttgcgcgacaggccccaatatttttggtgaaggtatcttttcctggaatatctgcgccgttctggttttgctgtaatgcgacagaagcctgatttaccgtttcctgtaaaccgaggttttggataaACAGCGGCTTATTGGGAATATCTGCTCCGTTCCGGTCTTTTGCCAGACGGGCATTGGCATTATCCATTGCAATTTTCACCGCTTTTGCGGTGGCTGCCAGCGTTTCACTGGGGCTg                                                                                                                                                    <  2:236438‑M2/116‑1 (MQ=255)                                                                                                                                                  cgctatatgcgcgaacggccccaatatttttggtgaaggtatctgttcctggaatatctgcgcgtttctggttttgctgtaatgcgccagaagcctgtgttaccgtttcctgtaaaccgaggttttggataaACAGCGGCGTATTGGGAATATCTGCTCCGTTCCGGTCTTTTGCCAGACGGGCATTGGCATTATCCATTGCAATTTTCACCGCTTTTGCGGTGGCTGCCAGCGTTTCACTGGGGCTGTCAGTGGCACTGGTTAGCTGAACGAGTCCTTTTTTGTTCAGGCTGGcatc                                                                                                  <  2:224924‑M2/166‑1 (MQ=255)                                                                                                                                                          tttCCAAGCCACGTATGGATTGAGTCTTTTGCAAAAGTAAGCCCACCGGGCAAGTTATCCCCATTCTTTGGCACGGCTTTTCTAGTCCTTTTTACCGTTGCCTTTAAACTGAGTTTTTGGTTAAACAGCGGCTTATTGGGAATATCGGCTCCGTTCCGGTCTTTTGCCAGACGGGCATTGGCATTATCCATTGCAATTTTCACCGCTTTTGCGGTGGCTGCCAGCGTTTCACTGGGGCTGTCAGTGGCACTGGTTAGCTGAACGAGTCCTTTTTTGTTCAGGCTGGCATCATAGatat                                                                                          <  2:77171/298‑1 (MQ=255)                                                                                                                                                                 aggccccaatatttttggtgaaggtatcttttcctggaatatctgcgccgttctggttttgctgtaatgcgccagaagcctgatttaccgtttcctgtaaaccgaggttttggataaACAGCGGCTTATTGGGAATCTCTGCTCCGTTCCGGTCTTTTGCCAGACGGGCATTGGCCTTATCCATTGCCATTTTCACCGCTTTTGCGGTGGCTGCCAGCGTTTCACTGGGGCTTTCCGCGGCCCTGGTTAGCTGAACGAGTCTTTTTTTGTTCAGGCTGGCCTCCTAGATATCCAGAtt                                                                                   >  2:150805‑M2/118‑298 (MQ=255)                                                                                                                                                                             ttGAGTCGTTTTCAAAAGTAAGCCCACCGGACAAGGTATCGCCATTCTTTTGCACGGCGTTCCTAGCCCTGTTTACCGTTTCCTGTAAACCGAGGTTTTGGATAAACAGCGGCTTATTGGGAATATCTGCTCCGTTCCGGTCTTTTGCCAGACGGGCATTGGCATTATCCATTGCAATTTTCACCGCTTTTGCGGTGGCTGCCAGCGTTTCACTGGGGCTGTCAGTGGCACTGGTTAGCTGAACGAGTCCTTTTTTGTTCAGGCTGGCATCATAGATATCCAGATTTTCACGTGCTGt                                                                       >  1:253807/1‑298 (MQ=255)                                                                                                                                                                                         tatcttttcctggaatatctgcgccgttctggttttgctgtaatgcgccagaagcctgatttaccgtttcctgtaaaccgaggttttggataaACAGCGGCTTATTGGGAATATCTGCTCCGTTCCGGTCTTTTGCCAGACGGGCATTGGCATTATCCATTGCAATTTTCACCGCTTTTGCGGTGGCTGCCAGCGTTTCACTGGGGCTGTCAGTGGCACTGGTTAGCTGAACGAGTCCTTTTTTGTTCAGGCTGGCATCATAGATATCCAGATTTTCACGTGCTGTACGCTGTGCTGa                                                           <  1:89740‑M2/205‑1 (MQ=255)                                                                                                                                                                                               ttaggccAGCGTACAAGTTATCGCATTTCTTTGGCGCGGCGTTCGTTGCCGTGTTTGCAGTTTCCTTTAAACGTGGGTTTTGGATAAACAGCTGCTGATTGGGATTATCTGCTCCGTTCCGGTCTGTTGCCAGACGGGCAGTGGCAGGATCCATTGCAATTTTCACCGCTTTTTCGGTGGCTGACAGCGTTTCACTGGGGCTGTAAGTGGCACTGGTTAGCTGAACGAGTCATTTTTTGTTCAGGCTGGCATCATAGATATCCAGATTTTCACGTGCTGTACGCTGTGCTGATGcccc                                                     <  2:135441/293‑1 (MQ=255)                                                                                                                                                                                                                                    ggCGTTCCTAGCCCTGTTTACCGTTTCCTGTAAACCGAGGTTTTGGATAAACAGCGGCTTATTGGGAATATCTGCTCCGTTCCGGTCTTTTGCCAGACGGGCATTGGCATTATCCATTGCAATTTTCACCGCTTTTGCGGTGGCTGCCAGCGTTTCACTGGGGCTGTCAGTGGCACTGGTTAGCTGAACGAGTCCTTTTTTGTTCAGGCTGGCATCATAGATATCCAGATTTTCACGTGCTGTACGCTGTGCTGATGCCCCGGCAGTTTTAATTTCGCTGAGGTTATTTTTTATcagc                <  1:285811/298‑1 (MQ=255)                                                                                                                                                                                                                                             agcctgatttaccgtttcctgtaaaccgaggttttggataaACAGCGGCTTATTGGGAATATCTGCTCCGTTCCGGTCTTTTGCCAGACGGGCATTGGCATTATCCATTGCAATTTTCACCGCTTTTGCGGTGGCTGCCAGCGTTTCACTGGGGCTGTCAGTGGCACTGGTTAGCTGAACGAGTCCTTTTTTGTTCAGGCTGGCATCATAGATATCCAGATTTTCACGTGCTGTACGCTGTGCTGATGCCCCGGCAGTTTTAATTTCGCTGAGGTTATTTTTTATCAGCAGCGCGTTa       <  1:30603‑M2/257‑1 (MQ=255)                                                                                                                                                                                                                                               cctgatttaccgtttcctgtaaaccgaggttttggataaACAGCGGCTTATTGGGAATATCTGCTCCGTTCCGGTCTTTTGCCAGACGGGCATTGGCATTATCCATTGCAATTTTCACCGCTTTTGCGGTGGCTGCCAGCGTTTCACTGGGGCTGTCAGTGGCACTGGTTAGCTGAACGAGTCCTTTTTTGTTCAGGCTGGCATCATAGATATCCAGATTTTCACGTGCTGTACGCTGTGCTGATGCCCCGGCAGTTTTAATTTCGCTGAGGTTATTTTTTATCAGCAGCGCGTTAtt     >  1:93373‑M2/40‑298 (MQ=255)                                                                                                                                                                                                                                                  tGTTTACCGTTTCCTGTAAACCGAGGTTTTGTATAAACAGCGGCTTATTGGTACTCTCTGCTCCGTTCCGGTCTTTTCCCAGACCGCCATAGGCCTTCTCCATTGCAATTTTCACCGCTTGTCCGGTGGTTGCCAGAGTTTACCTTGGGCTGCCAGTTGCACGGGTTCGCTGACAGCCTCCTTTCTTGTTCAGGCCGGACTCATCGAGATACAGATTTTCACTTGTATTCCGCTCGGCTGATCCCACGGCAGTTTCAATTTACCCGATGGCATTTTTTTTcaccacagagatattaca  >  2:37679/1‑285 (MQ=255)                                                                                                                                                                                                                                                  tGTTTACCGTTTCCTGTAAACCGAGGTTTTGGATAAACAGCGGCTTATTGGGAATATCTGCTCCGTTCCGGTCTTTTGCCAGACGGGCATTGGCATTATCCATTGCAATTTTCACCGCTTTTGCGGTGGCTGCCAGCGTTTCACTGGGGCTGTCAGTGGCACTGGTTAGCTGAACGAGTCCTTTTTTGTTCAGGCTGGCATCATAGATATCCAGATTTTCACGTGCTGTACGCTGTGCTGATGCCCCGGCAGTTTTAATTTCGCTGAGGTTATTTTTTATCAGCAGCGCGTTATTGCt  >  1:290690/1‑298 (MQ=255)                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                      TCCCATTTAAGATTCATCAGGTCTTTTGTTGTGGTGCTTTGTTTGCTTCTCCATTTGAAATATTCATTGCCGTTGTCGCCTGTTTCAAACCACATGTATGAATCAGTGTCGCTGTCGGCATCATTTTTAAATCCAATCTTTGCCCAGTCAGTATTTCGAATCCAGGCAAGGATTGAGTCGTTTTCAAAAGTAAGCCCACCGGACAAGGTATCGCCATTCTTTTGCACGGCGTTCCTAGCCCTGTTTACCGTTTCCTGTAAACCGAGGTTTTGGATAAACAGCGGCTTATTGGGAATATCTGCTCCGTTCCGGTCTTTTGCCAGACGGGCATTGGCATTATCCATTGCAATTTTCACCGCTTTTGCGGTGGCTGCCAGCGTTTCACTGGGGCTGTCAGTGGCACTGGTTAGCTGAACGAGTCCTTTTTTGTTCAGGCTGGCATCATAGATATCCAGATTTTCACGTGCTGTACGCTGTGCTGATGCCCCGGCAGTTTTAATTTCGCTGAGGTTATTTTTTATCAGCAGCGCGTTATTGCT  >  CP006584/297287‑297825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.