New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006584	1840765 =	1 (0.040)	29 (1.030)	29/586	0.1	96.7%	intergenic (+248/‑63)	LY180_08735/LY180_08740	pyruvate kinase/murein lipoprotein
	?	CP006584	= 1840785	NA (NA)					intergenic (+268/‑43)	LY180_08735/LY180_08740	pyruvate kinase/murein lipoprotein

AACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCTTTTTTTATTTAATCGATAACCAGAAGCAATAAAAAATCAAATCGGATTTCACTATATAATCTCACTTTATCTAAGATGAATCCGATGGAAGCATCCTGTTTTCTCTCAATTTTTTTATCTAAAACCCAGCGTTCGATGCTTCTTTGAGCGAACGATCAAAAATAAGTGCCTTCCCATCAAAAAAATATTCTCAACATAAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGA  >  CP006584/1840491‑1841076                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                                    ctgtaatattgcttttgtgaattaatttgtatatcgaagcgccctgatgggcgctttttttatttaatcgataaccagaagcaataaaaaatcaaatcggatttcactatataatctcactttatctaagatgaatccgatggaagcatcctgttttctctcaatttttttatctaaaacccagcgttcgatgcttctttgagcgaacgatcaaaaataagtgccttcccatcaaaaaaatattctcaacataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTaa                                                                                                                                                                                                                                                                                                  <  1:127411‑M1/24‑1 (MQ=255)                             taatatcgaagagccctgatgggcgctttttttatttaatcgataaccagaagcaataaaaaatcaaatcggatttaattatataatctcactttatcgaagatgaatccgatggaagcatactgttttctctcaatttttttatctaaaacccagcgttcgatacttatttgagcgaacgatcaaaaataagtgccttaccatcaaaaaaatattctcaacataaaaaacgttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTaga                                                                                                                                                                                                                                                                      >  2:135320‑M1/247‑298 (MQ=255)                                                               tttaatcgataaccagaagcaataaaaaatcaaatcggatttcactatataatctcactttatctaagatgaatccgatggaagcatcctgttttctctcaatttttttatctaaaacccagctttcgatgcttctttgagcgaacgatcaaaaataagtgccttcccatcaaaaaaatattctcaacataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACt                                                                                                                                                                                                                                    >  2:189761‑M1/213‑298 (MQ=255)                                                               tttaatcgataaccagaagcaataaaaaatcaaatcggatttcactatataatctcactttatctaagatgaatccgatggaagcatcctgttttctctcaatttttttatctaaaacccagcgttcgatgcttctttgagcgaacgatcaaaaataagtgccttcccatcaaaaaaatattctcaacataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACt                                                                                                                                                                                                                                    <  1:199713‑M1/86‑1 (MQ=255)                                                                           ccagaagcaataaaaaatcaaatcggatttcactatataatctcactttatctaagatgaatccgatggaagcatcctgttttctctcaatttttttatctaaaacccagcgttcgatgcttctttgagcgaacgatcaaaaataagtgccttcccatcaaaaaaatattctcaacataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGt                                                                                                                                                                                                                                                                  >  1:198205‑M1/201‑256 (MQ=255)                                                                           ccagaagcaataaaaaatcaaatcggatttcactatataatctcactttatctaagatgaatccgatggaagcatcctgttttctctcaatttttttatctaaaacccagcgttcgatgcttctttgagcgaacgatcaaaaataagtgccttcccatcaaaaaaatattctcaacataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGATACATGGAGATTAACTCAATCTAGAGGGt                                                                                                                                                                                                                                                                  <  2:198205‑M1/56‑1 (MQ=255)                                                                             agaagcaataaaaaatcaaatcggatttcactatataatctcactttatctaagatgaatccgatggaagcatcctgctttctctcaatttttttatctaaaacccagcgttcgatgcttctttgagcgaacgatcacaaataagtgccttcccatcacaacaatattctcaacataaaaaactttgtgtaatacttgAAAAACTTTGCGTAATACTTTTAACGCTACATGGCGATAAACTCAATCTAGAGGGTATTATAAATGAAATCTACAAAAATCGTACTGGTCGCGTTCATcc                                                                                                                                                                                                                      <  2:168144‑M1/100‑1 (MQ=255)                                                                                           atcaaatcggatttcactatataatctcactttatctaagatgaatccgatggaagcatcctgttttctctcaatttttttatctaaaacccagcgttcgatgcttctttgagcgaacgatcaaaaataagtgccttcccatcaaaaaaatattctcaacataaaaaactttgtgtactacttgAAACACTTTGTGTAATACTTGTAACGCTACATGGAGATTCACTCAATCTAGAGGGTATTAATAATTAAACTTAGTAACATGGTACTGGGCGCGGTAATCCTGGGTTctactttg                                                                                                                                                                                                        <  2:156026‑M1/114‑4 (MQ=255)                                                                                              aaatcggatttcactatataatctcactttatctaagatgaatccgatggaagcatcctgttttctctcaatttttttatctaaaacccagcgttcgatgcttctttgagcgaacgatcaaaaataagtgccttcccatcaaaaaaatattctcaacataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTctgctg                                                                                                                                                                                                     <  1:223056‑M1/117‑1 (MQ=255)                                                                                                    gatttcactatataatctcactttatctaagatgaatccgatggaagcatcctgttttctctcaatttttttatctaaaacccagcgttcgatgcttctttgagcgaacgatcaaaaataagtgccttcccatcaaaaaaatattctcaacataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGt                                                                                                                                                                                               >  2:223056‑M1/176‑298 (MQ=255)                                                                                                      tttcactatataatctcactttatctaagatgaatccgatggaagcatcctgttttctctcaatttttttatctaaaacccagcgttcgatgcttctttgagcgaactatcaaaaataagtgccttcccatcaaaaaaatattctcaacataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCCATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTAATGGGAGCGGAAATCCTGGGTTATAATCTGTTGGAAGGTTg                                                                                                                                                                                             <  2:293840‑M1/125‑1 (MQ=255)                                                                                                                                  gatgaatccgatggaagcatcctgttttctctcaatttttttatctaaaacccagcgttcgatgcttctttgagcgaacgatcaaaaataagtgccttcccatcaaaaaaatattctcaacataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTg                                                                                                                                                                 >  1:293840‑M1/146‑298 (MQ=255)                                                                                                                                     taatccgattgaagtttccttttttatttcaatttttttattcaaaacccagcgttcgatgcttattttagcgaacgatcaaaaagaatttccttcccataaaaaaaatattctcaaaataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGtct                                                                                                                                                              >  2:127411‑M1/143‑298 (MQ=255)                                                                                                                                                                       tttttttataaaacccacggttagattgttctttgagcgaactagcaaaaataagtgcattaccatcaaaaaaatattctcaacataaaaaaatttgtgtaatcattgAAAAACTTTGTGTAATACTTGTAACGCTACAGGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGAcc                                                                                                                            >  2:304303‑M1/109‑298 (MQ=255)                                                                                                                                                                         tttatctaaaacccagcgttcgatgcttctttgagcgaacgatcaaaaataagtgccttcccatcaaaaaaatattctcaacataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAg                                                                                                                          <  1:311905‑M1/192‑1 (MQ=255)                                                                                                                                                                            atctaaaacccagcgttcgatccttctttgagcgaacgatcaaaaataagtgccttcccatcaaaaaaatattctcaacataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTg                                                                                                                       <  1:51663‑M1/195‑1 (MQ=255)                                                                                                                                                                             tctaaaacccagcgttcgatgcttctttgagcgaacgatcaaaaataagtgccttcccatcaaaaaaatattctcaacataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGa                                                                                                                      <  1:28616‑M1/196‑1 (MQ=255)                                                                                                                                                                                   acccagcgttcgatgcttctttgagcgaacgatcaaaaataagtgccttcccatcaaaaaaatattctcaacataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTAAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTCCTGGCAGGTCGCTCCAGCAAACCACAAATCGATCACCTTTCTTCTGACGTTCAGACTCTAAACGCAAAAGTTCACcagctgaaccaca                                                                                                                <  2:231148‑M1/202‑7 (MQ=255)                                                                                                                                                                                                     ctttgagcgaacgatcaaaaataagtgccttcccatcaaaaaaatattctcaacataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGTGtt                                                                                              >  2:51663‑M1/79‑298 (MQ=255)                                                                                                                                                                                                               acgatcaaaaataagtgccttcccatcaaaaaaatattctcaacataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCa                                                                                    <  1:88034‑M1/230‑1 (MQ=255)                                                                                                                                                                                                                         ataagtgccttcccatcaaaaaaatattctcaacataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTaaa                                                                          <  1:45359‑M1/240‑1 (MQ=255)                                                                                                                                                                                                                                          aaaaaaatattctcaacataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGc                                                         <  1:158499‑M1/257‑1 (MQ=255)                                                                                                                                                                                                                                               aatattctcaacataaaaaactttgtgtcatccttgAAAAACTTTGTGTACTACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGCTCATCTGTCTTCTGACGTTAAGACCCTGAACGCTAACGTTGACCAGCTCAGCAACGACGTGACAGCAATGCGTTCACACGTTCAGACTGCTAAAGATGACCCAGCTCGTGctaaac                                                    <  2:71108‑M1/262‑3 (MQ=255)                                                                                                                                                                                                                                                atattctcaacataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGCCGTGAACGCAATGCGTTCCGACGTTCAGGCTGCAAAATATGACGCACCTCGTGCCaacac                                                   <  2:146226‑M1/263‑3 (MQ=255)                                                                                                                                                                                                                                                    tctcaacataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGt                                               >  1:115773‑M1/32‑298 (MQ=255)                                                                                                                                                                                                                                                      tcaacataaaaaactttgtgtaatacttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCt                                             >  1:146226‑M1/30‑298 (MQ=255)                                                                                                                                                                                                                                                                  gcttggtgtaatatttgAAAAAATTGGTGTTATTAGTGTAACGCTTATTGGAGATTGATGCAAGGTAGAGGGTATTAATAATGAAGGCTATTAAGCGGGTACTGGGGGCGGTAATCCTGGGTTCTACTCTGTGTGCAGGTTGCTCCAGGAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGATCGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGc                                 >  2:199713‑M1/18‑298 (MQ=255)                                                                                                                                                                                                                                                                               cttgAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGc                    <  1:306234‑M1/294‑1 (MQ=255)                                                                                                                                                                                                                                                                                     aaaCTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTaa              <  1:106904/298‑1 (MQ=255)                                                                                                                                                                                                                                                                                            gtgtAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCCGCGTCTGATCAACATTGCTACTAAAAACCCCACGTAATAATAcc       >  2:286974/1‑298 (MQ=255)                                                                                                                                                                                                                                                                                                 aTACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTTACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTgtga  >  1:140602/1‑298 (MQ=255)                                                                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                                    AACACCGCATCTGTTCACGTCCTGTAATATTGCTTTTGTGAATTAATTTGTATATCGAAGCGCCCTGATGGGCGCTTTTTTTATTTAATCGATAACCAGAAGCAATAAAAAATCAAATCGGATTTCACTATATAATCTCACTTTATCTAAGATGAATCCGATGGAAGCATCCTGTTTTCTCTCAATTTTTTTATCTAAAACCCAGCGTTCGATGCTTCTTTGAGCGAACGATCAAAAATAAGTGCCTTCCCATCAAAAAAATATTCTCAACATAAAAAACTTTGTGTAATACTTGTAACGCTACATGGAGATTAACTCAATCTAGAGGGTATTAATAATGAAAGCTACTAAACTGGTACTGGGCGCGGTAATCCTGGGTTCTACTCTGCTGGCAGGTTGCTCCAGCAACGCTAAAATCGATCAGCTGTCTTCTGACGTTCAGACTCTGAACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGA  >  CP006584/1840491‑1841076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.