New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP006584 | 2253821 = | 4 (0.140) | 27 (1.010) | 27/556 | 0.1 | 86.0% | coding (38/414 nt) | LY180_10760 | hypothetical protein |
? | CP006584 | 2255662 = | 5 (0.190) | coding (826/1284 nt) | LY180_10775 | tail protein |
GCAAACTGAGAAAAGTTTGTAGCTTCCTGCCAGCTTAATAATTCGCGACCACCATCTGCACCTCGCCCGTCATCCCAGACACGAATGAAATCACCGCGGGCTTCAGGTAATACCAGCGAAGGAAACACTTTCGCCAGCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTGAATTTCGGGTCATTGTTAATGGCTGCGGCAATTTCTTTCAGTGTATCCAGCGTGGCAGGCGCACCGTTAATCAGAGCGGTAATAGCGGCCTGAACAAACGCAGTAGTCGCAATCCGCGTGGTGTTATTTCCTGCGGCAGGCGTCGGCGCTTTTGGTTCTCCGGTAAATGTCGGATTATGTTTCTGGGCATACTGGG > CP006584/2255379‑2255955 | acatttgagttagtcaatttatagaattgccatactgacattttccctgccacaggagcctggtcatgttcattaatagaaatgacggctgtcggaaatgggataggaaaattaatcaaaacttcatttgttgtggcctcagttagcccccattgttcaatataaccatccgggcttcgcctccatcccgtcgttgtatctcccccacactcccacgctgacatatcaggaatttggttttgcccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGAc > 1:281379‑M2/284‑298 (MQ=255) tGAGAAAAGTTTGTAGCTTCCTGCCAGCTTAATAATTCGCGACCACCATCTGCACCTCGCCCGTCATCCCAGACACGAATGAAATCACCGCGGGCTTCAGGTAATACCAGCGAAGGAAACACTTTCGCCAGCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCca < 1:309063/298‑1 (MQ=255) gaattgccatactgacattttccctgccacaggagcctggtcatgttcattaatagaaatgacggctgtcggaaatgggataggaaaattaatcaaaacttcatttgttgtggcctcagttagcccccattgttcaatataaccatccgggcttcgcctccatcccgtcgttgtatctcccccacactcccacgctgacatatcaggaatttggttttgcccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCaaa > 1:53809‑M2/261‑298 (MQ=255) gccatactgacattttccctgccacaggagcctggtcatgttcattaatagaaatgacggctgtcggaaatgggataggaaaattaatcaaaacttcatttgttgtggcctcagttagcccccattgttcaatataaccatccgggcttcgcctccatcccgtcgttgtatctcccccacactcccacgctgacatatcaggaatttggttttgcccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGt > 1:243967‑M2/256‑298 (MQ=255) tgacattttccctgccacaggagcctggtcatgttcattaatagaaatgacggctgtcggaaatgggataggaaaattaatcaaaacttcatttgttgtggcctcagttagcccccattgttcaatataaccatccgggcttcgcctccatcccgtcgttgtatctcccccacactcccacgctgacatatcaggaatttggttttgcccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGtc < 1:108833‑M2/50‑1 (MQ=255) acattttcccggccacaggagcctggtcatgttcattaatagaaatgacggctgtcggaaatgggataggaaaattaatcaaaacttcatttgttgtggcctcagttagcccccattgttcaatataaccatccgggcttcgcctccatcccgtcgttgtatctcccccacactcccacgctgacatatcaggaatttggttttgcccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGtctc < 1:202007‑M2/52‑1 (MQ=255) ccctgccacaggagcctggtcatgttcattaatagaaatgacggctgtcggaaatgggataggaaaattaatcaaaacttcatttgttgtggcctcagttagcccccattgttcaatataaccatccgggcttcgcctccatcccgtcgttgtatctcccccacactcccacgctgacatatcaggaatttggttttgcccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGt < 1:186666‑M2/59‑1 (MQ=255) ccacaggagcctggtcatgttcattaatagaaatgacggctgtcggaaatgggataggaaaattaatcaaaacttcatttgttgtggcctcagttagcccccattgttcaatataaccatccgggcttcgcctccatcccgtcgttgtatctcccccacactcccacgctgacatatcaggaatttggttttgcccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTg > 1:333438‑M2/235‑298 (MQ=255) ttcattaatagaaatgacggctgtcggaaatgggataggaaaattaatcaaaacttcatttgttgtggcctcagttagcccccattgttcaatataaccatccgggcttcgcctccatcccgtcgttgtatctcccccacactcccacgctgacatatcaggaatttggttttgcccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTg < 1:273302‑M2/83‑1 (MQ=255) atagaaatgacggctgtcggaaatgggataggaaaattaatcaaaacttcatttgttgtggcctcagttagcccccattgttcaatataaccatccgggcttcgcctccatcccgtcgttgtatctcccccacactcccacgctgacatatcaggaatttggttttgcccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAAtgg < 1:21522‑M2/90‑1 (MQ=255) gACACGAATGAAATCACCGCGGGCTTCAGGTAATACCAGCGAAGGAAACACTTTCGCCAGCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAAtggtg > 1:186908/1‑298 (MQ=255) gacagtacgtctggcggaaatgggataggaaaattaatcataacttcattttgtgtggcctaagttagcgcccgtttgtgaatacaaccctccgggcttcgcctccatcccgtcgttgtcgctccccctcacgcccacggtgacatattaggaatttggctttgcccgttccccacatcccgttttgcctcttctcccaaaccaaGGTAGGCGAGCAGACCAGCCACATCTTTTCCACTCAAAGGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAAtggtgg < 2:99774‑M2/93‑1 (MQ=255) aaatgacggctgtcggaaatgggataggaaaattaatcaaaacttcatttgttgtggcctcagttagcccccattgttcaatataaccatccgggcttcgcctccatcccgtcgttgtatctcccccacactcccacgctgacatatcaggaatttggttttgcccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATggtggt < 1:36555‑M2/94‑1 (MQ=255) gacggctgtcggaaatgggataggaaaattaatcaaaacttcatttgttgtggcctcagttagcccccattgttcaatataaccatccgggcttcgcctccatcccgtcgttgtatctcccccacactcccacgctgacatatcaggaatttggttttgcccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTg > 1:220500‑M2/201‑298 (MQ=255) acggctgtcggaaatgggagaggaaaattactcaaaactttatttgttgtggcctcatttagcccccatggttcaatacaaccctccgggcttcgcctccatcccgtcgttgtatctcccccaccctcccacgctgacatatcaggaatttggttttgcccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTGa < 2:333438‑M2/99‑1 (MQ=255) tgtcggaaatgggataggaaaattaatcaaaacttcatttgttgtggcctcagttagcccccattgttcaatataaccatccgggcttcgcctccatcccgtcgttgtatctcccccacactcccacgctgacatatcaggaatttggttttgcccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTGAATTTc > 1:105637‑M2/195‑298 (MQ=255) atgggatgtgaatattactcataagctccgttgttttggcctccgtgagcccccattgttcaatatacccatccgggcgtcgcctcgttcccgtcgttgtatctcccccacgctcccacgctgacatatcaggaatgtgggtttgcccgttaccgacatcccgtgttgccgcttcgcacaaacgccGGGATGCGAGAAGAGCAGCCACATCTTGTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTGAATTTCGGGTCAtt < 2:333475‑M2/112‑1 (MQ=255) gcctcagttagcccccattgttcaatataaccatccgggcttcgcctccatcccgtcgttgtatctcccccacactcccacgctgacatatcaggaatttggttttgcccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACTTCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTGAATTTCGGGTCATTGTTAATGGCTGCGGCAATTTCTTTCAGTGTATCCAGCg > 1:128590‑M2/149‑298 (MQ=255) aGCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTGAATTTCGGGTCATTGTTAATGGCTGCGGCAATTTCTTTCAGTGTATCCAGCg > 1:206316/1‑298 (MQ=255) agttaccccccatttttcaaattaaccacccgggcttccccgccagcccgtcgttgtatctcccccacccgcccacgctgagatatcaggaatttggtttttgccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTGAATTTCGGGTCATTGTTAATGGCTGCGGCAATTTCTTTCAGTGTATCCAGCGTGGCa < 2:240669‑M2/155‑1 (MQ=255) ccattgttcaatataaccatccgggcttcgcctccatcccctcgttgtatctcccccacactcccacgctgacatatcaggaatttggttttgcccgttccccacatcccgttttgccgcttctcccaaaccaaGGTATGCGACAAGACCAGCCCCATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCCTGTGTCATGTTGGTGCCGTATTTCGGGTCCTTGTTACTGGCTGCGTCCAGTTCTTGCCATGTATGCAGCTTGGCTGGCGCTCCg > 2:176194‑M2/135‑298 (MQ=255) taacccacctggctacgcttcccgcccgtcgttttatctcccccacccccccccgcttacatatcaggaatttggttttgcccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTGAATTTCGGGTCATTGTTAATGGCTGCGGCAATTGCTTTCAGTGTATCCAGCGTGGCAGGCGCACCGTTAATCAGAGCgg < 2:281379‑M2/177‑1 (MQ=255) accccgccgggcttctcgtccctcccgtcgttgtatctcccccacactcccacgcggacatatcaggaatttggttttgcccgttccccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCGGCCACAGCTTTTCCACGCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTGAATTTCGGGTCATTGTTAATGGCTGCGGCAATTTCTTTCAGTGTATCCAGCGTGGCAGGCGCACCGTTAATCAGAGCGGt < 2:88600‑M2/178‑1 (MQ=255) cGCCCCGTTAAACTTCAAAGACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTGATGGTGGTGCTGAATTTCGGGTCATTGTTAATGGCTGCGGCAATTTCTTTCAGTGTATCCAGCGTGGCAGGCGCACCGTTAATCAGAGCGGTa < 1:183460/298‑1 (MQ=255) ccccccgggtttcacctccgtcccgtctttgtatctcccccccacccccccgctgacatctcaggaatttggttttgcccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCAACATCTTTTCCACTCAAATGAGTCAGCGGCTCATCCAGTGGTTGCTTACCTGACAGCGGATTGTTAATGGTGGTGCTGAATTTCGGGTCATTGTTAATGGCTGCGGCAATTTCTTGCAGTGTATCCAGCGTGGCAGGCGCACCGTTAATCAGAGCGGTaa < 2:105637‑M2/180‑1 (MQ=255) ccatcccgtcgttgtatctcccccacactcccacgctgacatatcaggaatttggttttgcccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTc > 2:147588‑M2/102‑145 (MQ=255) ccatcccgtcgttgtatctcccccacactcccacgctgacatatcaggaatttggttttgcccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTc < 1:147588‑M2/44‑1 (MQ=255) tgctgtggtatgtccccaaacctcccaggtatacctatcgggaatttggtgttggccgttaccagcaacccgttttggcgcttctcccaagccaaGGTATGCGAAAAGACGAGTCACATCTTTTCCACTCCATTGAGTCAGCGTCTCATCCAGTGGTGGCTGACCTGACAGCGCATTGTTAATGGTGGTGCTGAATTTCGGGTCATTGTTAATGGCTGCGGCAATTTCTTTAAGTGTATCCAGCGTGGCAGGCGCACCGTTAATCAGAGCGGTAAGAGCGGCCTGAACAAACGCagta < 2:220500‑M2/203‑1 (MQ=255) gttgtatctcccccacactcccacgctgacatatcaggaatttggttttgcccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTGAATTTCGGGTCATTGTTAATGGCTGCGGCAATTTCTTTCAGTGTATCCAGCGTg > 2:232639‑M2/92‑243 (MQ=255) gttgtatctcccccacactcccacgctgacatatcaggaatttggttttgcccgttacccacatcccgttttgccgcttctcccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTGAATTTCGGGTCATTGTTAATGGCTGCGGCAATTTCTTTCAGTGTATCCAGCGTg < 1:232639‑M2/152‑1 (MQ=255) aaggtgctccgCTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTGAATTTCGGGTCATTGTTAATGGCTGCGGCAATTTCTGTCAGTGTATCCAGCGTGGCAGGCGCACCGTTAATCAGAGCGGTAATAGCGGCCTGAACAAACGCAGTAGTCGCAATACGCGTGGTGTTATTTCCTGCGGCAGGCGTCGGCGCTTTTGGTTCTCCGGTa > 1:315754/11‑298 (MQ=255) gttttgccgctgctccgaaaacaaGGTATGCGCGAAGCACAGCTGCATCTTTTCCACTCAAATGAGTCATCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTGAAGTTCGGGTCATTGTTAATGGCTGCTGCAATTTCTTTCAGTGTATCCAGCGTGGCAGGCGCACCGTTAATCAGAGCGGTAATAGCGGCCTGAACAAACGCAGTAGTCGCAATCCGCGTGGTGTTATTTCCTGCGGCAGGCGTCGGCGCTTTTGGTTCTCCGGTAAATGTCGGAtt < 2:243967‑M2/274‑1 (MQ=255) cccaaaccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTGAATTTCGGGTCATTGTTAATGGCTGCGGCAATTTCTTTCAGTGTATCCAGCGTGGCAGGCGCACCGTTAATCAGAGCGGTAATAGCGGCCTGAACAAACGCAGTAGTCGCAATCCGCGTGGTGTTATTTCCTGCGGCAGGCGTCGGCGCTTTTGGTTCTCCGGTAAATGTCGGATTATGTTTCTGGGCAt < 1:176194‑M2/288‑1 (MQ=255) ccaaGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTGAATTTCGGGTCATTGTTAATGGCTGCGGCAATTTCTTTCAGTGTATCCAGCGTGGCAGGCGCACCGTTAATCAGAGCGGTAATAGCGGCCTGAACAAACGCAGTAGTCGCAATCCGCGTGGTGTTATTTCCTGCGGCAGGCGTCGGCGCTTTTGGTTCTCCGGTAAATGTCGGATTATGTTTCTGGGCATACTggg > 1:234444‑M2/5‑298 (MQ=255) | GCAAACTGAGAAAAGTTTGTAGCTTCCTGCCAGCTTAATAATTCGCGACCACCATCTGCACCTCGCCCGTCATCCCAGACACGAATGAAATCACCGCGGGCTTCAGGTAATACCAGCGAAGGAAACACTTTCGCCAGCACAGGGTAATCAGAGGCAGAAAATTTCGCCCCGTTAAACTTCAAAAACACCATACTGGACCAGCTGTCGATTACAGTATTTGGCATTGCCGCGGAGGGCCAGAAGAACGGAACGCCAATAGCTGGAGCACCTTCTCCCAAACCAAGGTATGCGAGAAGACCAGCCACATCTTTTCCACTCAAATGAGTCAGCGTCTCATCCAGTGGTTGCTTACCTGACAGCGCATTGTTAATGGTGGTGCTGAATTTCGGGTCATTGTTAATGGCTGCGGCAATTTCTTTCAGTGTATCCAGCGTGGCAGGCGCACCGTTAATCAGAGCGGTAATAGCGGCCTGAACAAACGCAGTAGTCGCAATCCGCGTGGTGTTATTTCCTGCGGCAGGCGTCGGCGCTTTTGGTTCTCCGGTAAATGTCGGATTATGTTTCTGGGCATACTGGG > CP006584/2255379‑2255955 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |