New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006584	= 2385052	1 (0.040)	18 (0.640)	17/586	0.7	94.7%	coding (727/1026 nt)	LY180_11390	microcin C ABC transporter permease
	?	CP006584	2565084 =	NA (NA)					intergenic (+70/‑107)	LY180_12185/LY180_12190	D‑serine dehydratase/hypothetical protein

CTGGCTGGCGCAGGAAGAAGGTATTCGTCTTGAACCTTCGGCACTGGCGGGTATGGCCGGACCTCAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAAC  >  CP006584/2564804‑2565339                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                ctggctggcGCAGGAAGAAGGTATTCGTCTTGAACCTTCGGCACTGGCGGGTATGGCCGGACCTCAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATg                                                                                                                                                                                                                                                <  1:249394/298‑1 (MQ=255)    gctggcGCAGGAAGAAGGTATTCGTCTTGAACCTTCGGCACTGGCGGGTATGGCCGGACCTCAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGAGTAATACCACTCATCTGGTGAGGGCGACGGGAGGGGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGAAAAAAGCCGTTAATTACGTTTCAA‑CGCAGCATCGGAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGGGCAGACTTAAGACTGATGAATACCCTAATGAtt                                                                                                                                                                                                                                             >  1:137732/1‑298 (MQ=255)       ggcGCAGCAAGAAGGTATTCGTCTTGAACCTTCGGCACTGGCGGGTATGGCCGGACCTCAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTg                                                                                                                                                                                                                                          >  1:5979/1‑298 (MQ=255)                              ttGAACCTTCGGACCTGGCGGGTATGGCCGGACCTCAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTg                                                                                                                                                                                                                   <  1:140970/298‑1 (MQ=255)                                  aCCGTCGGCACTGGCGGGTATGGCCGGACCTCAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATa                                                                                                                                                                                                               <  1:267378/298‑1 (MQ=255)                                                  ggTATGGCCGGACCTCAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATg                                                                                                                                                                                               >  1:216118/1‑298 (MQ=255)                                                   ttATGGCGGGACCTGGGCGCGTGGGTGCATCCTGAAGTTACCACAAGATGGACGGTTTCAGGGGAGAACAACTGCGTACTTCTACTCAGCTGGTGTGGGCGACGGGAGGGGGAATGGTGACGGAAGAAGAGATGAAGCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGa                                                                                                                                                                                              <  2:216118/297‑1 (MQ=38)                                                            gACCTCAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGt                                                                                                                                                                                     <  1:111389/298‑1 (MQ=255)                                                              ccTCAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGttt                                                                                                                                                                                   <  1:311961/298‑1 (MQ=255)                                                                 cAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTcgc                                                                                                                                                                                <  1:207379/298‑1 (MQ=255)                                                                        tgtgtgCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAAATGCGTAATACCACTCATCTGGTGTGGGCGAAGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAAAATCTGGCAAAAGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGACGATGGCGAAGACTTAAGACTGATGAAGCCACTAATGATTTTGGTAAAACTCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGATAAAt                                                                                                                                                                         >  1:48205/1‑298 (MQ=255)                                                                        ggtgtgCATCAGTAATCTAACAGCGGATGCTGGGTTTGAGAGCAGAACATGTGGCTGATTCCACGCATCTGTAGGGGGGGACGGGCGGTGGAATGTTGCCGGAAGAAGAGATGAATAAATATCTGGCAAAAGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCTTTTCATGGGTGAGCGATGCTGCCGATGGCGCACACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAAt                                                                                                                                                                         <  2:109990/297‑1 (MQ=25)                                                                                   gTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGa                                                                                                                                                              >  1:159284/1‑298 (MQ=255)                                                                                                                  cAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTacac                                                                                                                               >  1:32356/1‑298 (MQ=255)                                                                                                                          ttgcagaaTACCACTGAGCTGGTGGGGGAGAGGGGGGGTGGGATGGGTCCGGAAGAAGAGATGATGCAATATCTGGCAAAAGGCCGTTAATAAC‑TTTCAACCGCAGCATCTCAATCCGTTCCCTGGGTGAGTGATGCTTACGATGGCGCAGACTTAAGACGGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGAGACACATCTTGTCATATGATCAAATGGTTTCGCTAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGActctct                                                                                                                       <  2:290822/292‑1 (MQ=18)                                                                                                                                   aCCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAAtt                                                                                                              >  1:216508/1‑298 (MQ=255)                                                                                                                                      aCTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCACTATCTGGCAAAAGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATGCCCTAATGATTGTGGTAAAAATCATTAAGTTAAGGTGGGTACACATCTTGTCATATGATCAAATGGTTTCGAGAAACATCAATAATCAGACAACAAGATGTGCGACACCGATGATTTACACGACTACTTTTACCaaatttc                                                                                                           >  2:126931/1‑293 (MQ=255)                                                                                                                                                   ggccGACGGGAGGTGGAATGGCGCCGGAAGAAGATATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCATTCCCGGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGAATGATGAATCCCAGAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGACCAACTGGTTTCGCGAAAAATCAATAATCATACAACAAAATGTGCCAACTCGTAATATTACCCGCCTCTCTTTCCCAATTCTGCCCCACATTaccc                                                                                              >  2:282045/4‑296 (MQ=25)                                                                                                                                                            gAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACCCTTAAAACGa                                                                                     >  1:118811/1‑298 (MQ=255)                                                                                                                                                                                  agagAAGAAGCAATAGTTGGCAGAAGGCCTGTTAGAACTTTTAAA‑CGCAGGATCGAAATCCTTTCCCTGGGTGGGCTATGCTTCCGATGGAGAAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCtt                                                               <  2:159284/298‑1 (MQ=17)                                                                                                                                                                                          ctgaagatCAGGCAAAAGGTGGATAATGACGTGTCAC‑GGCGGCATGTCAAGCCTGTCCCTGGGGTAGCAGTGCTGCCGATGGAGCAGACTTAAGACGGATGAATCACCTAATGATTTTGGTAAAAATCAGTAAGTGAAGGTGGATACACATCGTGTCATATGATCAAGTGTTGTCGCGAAAAATCAATAATCAGACAACAAGTTGTGCGAACTCGATATTTTGCACGACTCTCTTTACCAATTCTGCCCCGAATTACACTGAAAACGACTCAGCAGCTTAACGTTGGCTTGCCACGCa                                                       <  2:239480/292‑1 (MQ=14)                                                                                                                                                                                                    ggCAAAAGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACt                                             >  1:32970/1‑298 (MQ=255)                                                                                                                                                                                                         aaGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCCTTAAGTTAAGGTGGATACACATCTTGTCATATGATCAACTGTTTTCGCGACACATCAATAATCAGACAACAAGATGTGAGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCACCTAATTACACTTAAAACCACCAAACAGCTTAACGTTCGCTTGCCAACCATTACTTGTCttgcac                                        >  2:318654/1‑293 (MQ=18)                                                                                                                                                                                                                        gTTTCAA‑CGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGGGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGCATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCCTTACTTGACTTTCAAACTTTAACTCTTTcc                         >  2:105666/1‑298 (MQ=255)                                                                                                                                                                                                                                            aTCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGc      >  1:3687/1‑298 (MQ=255)                                                                                                                                                                                                                                             tCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGcc     <  1:72691/298‑1 (MQ=255)                                                                                                                                                                                                                                                tttCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGTACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGccaac  <  1:138398/298‑1 (MQ=255)                                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                CTGGCTGGCGCAGGAAGAAGGTATTCGTCTTGAACCTTCGGCACTGGCGGGTATGGCCGGACCTCAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAA‑CGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAAC  >  CP006584/2564804‑2565339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.