New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006584	= 3262158	0 (0.000)	30 (1.110)	29/562	0.1	100%	intergenic (+108/+15)	LY180_15475/LY180_15480	GSH‑dependent disulfide bond oxidoreductase/hydrogenase 2 accessory protein HypG
	?	CP006584	= 4312417	NA (NA)					intergenic (‑191/+57)	LY180_20660/LY180_20665	hypothetical protein/transcriptional regulator

TGTTAGCGAATTTTTTGGTGCGATGACGACCATCAGGACGCAACACATCGACATCCAGTTTCTCTTTAGCGGTGTCGATACCGATATAATGAAGTTCATGTTCCATAGTGAAACCAACCTTGCAAATACGGATTACCGGGAAAACCGGTCCATGATACTGTCCGGTTTATCACTTTGGGAGAAAGGCAGTCCGCTGCATAAATCTACGCAACAGGTTAGAACCCAAGGCCCGATACGGCATGCGGACTGCAGGCAGAGAAAACTGGCCGATTTTCTCTGCACTGGAGGGATAATACAAGGCCTGATAAGCGTAGCGCATCAGGCGGTTCCACTCCGCGCCGCTCTTTTCCGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTGCGCTCTTTACGCAGATCGGCATCATCCGGCAAAGGTTGCCCGGTAAAGGCATGCAGAAACGCTTCGCACAGCAGCTCGCTGTTGGTAGCGTGACGCAGGTTGTTCACCTGACGACGCGTGCGTTCATCGGTGAGGATTTTTAACACCTTAAGAGGAATGGA  >  CP006584/4312121‑4312710                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                      tgtgtgcgagctttttGGTGGTCTGACGCCCCTCCGAACGCTACACCGCGACTTCCAGTTGCTCTTTTGCGGTGTCGACACGGAGATATGTAAGGTCATGTTCCATCGTGAACCCAACCTTGCGAATGCGGATTGCCGGGACAGCCGGTGCATGCTACTGGCCGGTTTATCACTTTGGGAGTGAGGCAGTCCGCTGCATACATCTACGCAACAGGTTCGAACCCAAGGCCCGATACGGCATGCGGACTGCAGGCAGAGAAGACTGGCCGATTTTCTCTGCACTGGAGGGATAATACaa                                                                                                                                                                                                                                                                                                      <  2:139523/287‑1 (MQ=1)                                 tCAGGACGCAACACATCGACATCCAGTTTCTCTTTAGCGGTGTCGATACCGATATAATGAAGTTCATGTTCCATAGTGAAACCAACCTTGCAAATACGGATTACCGGGAAAACCGGTCCATGATACTGTCCGGTTTATCACTTTGGGAGAAAGGCAGTCCGCTGCATAAATCTACGCAACAGGTTAGAACCCAAGGCCCGATACGGCATGCGGACTGCAGGCAGAGAAAACTGGCCGATTTTCTCTGCACTGGAGGGATAATACAAGGCCTGATAAGCGTAGCGCATCAGGCGGTTcc                                                                                                                                                                                                                                                                      >  1:155580/1‑298 (MQ=32)                                     gACGCAACACATCGACATCCAGTTTCTCTTTAGCGGTGTCGATACCGATATAATGAAGTTCATGTTCCATAGTGAAACCAACCTTGCAAATACGGATTACCGGGAAAACCGGTCCATGATACTGTCCGGTTTATCACTTTGGGAGAAAGGCAGTCCGCTGCATAAATCTACGCAACAGGTTAGAACCCAAGGCCCGATACGGCATGCGGACTGCAGGCAGAGAAAACTGGCCGATTTTCTCTGCACTGGAGGGATAATACAAGGCCTGATAAGCGTAGCGCATCAGGCGGTTCCACTc                                                                                                                                                                                                                                                                  <  1:102787/298‑1 (MQ=33)                                       cggcacaacgcgtcATCCAGTTGTGTTTTAGAGGTGGCTATACCAAGATAATGTGGTTGAGTTGCCTAATTGAAACCAACCTGGCAACTACGGATTACCGGGAAAACCTGTCTATGGTACGGTCCGGTTAATAACTTTGGGTGAAGGGCAGTCCGCTGCATAGATCTGCGCAACAGGTTAGAACCCAAGGCCCGATGCGGCATGCGGACTGCAGGCAGAGAAAACTGGCCGATTTTGTCTGCACTGGAGGGATAATACAAGGCCTGATAAGCGTAGCGCATCAGGCGGTTCCACTCcg                                                                                                                                                                                                                                                                <  2:93343/285‑1 (MQ=11)                                                               tctTTAGCGGTGTCGATACCGATATAATGAAGTTCATGTTCCATAGTGAAACCAACCTTGCAAATACGGATTACCGGGAAAACCGGTCCATGATACTGTCCGGTTTATCACTTTGGGAGAAAGGCAGTCCGCTGCATAAATCTACGCAACAGGTTAGAACCCAAGGCCCGATACGGCATGCGGACTGCAGGCAGAGAAAACTGGCCGATTTTCTCTGCACTGGAGGGATAATACAAGGCCTGATAAGCGTAGCGCATCAGGCGGTTCCACTCCGCGCCGCTCTTTTCCGCTTTAGTAt                                                                                                                                                                                                                                        >  1:31346/1‑298 (MQ=255)                                                                                        aaTGAAGTTCATGTTCCATAGTGAAACCAACCTTGCAAATACGGATTACCGGGAAAACCGGTCCATGATACTGTCCGGTTTATCACTTTGGGAGAAAGGCAGTCCGCTGCATAAATCTACGCAACAGGTTAGAACCCAAGGCCCGATACGGCATGCGGACTGCAGGCAGAGAAAACTGGCCGATTTTCTCTGCACTGGCGGGATAATACAAAGCCTGATCAGCGTAGCGCATCAGGCCGTGCCACTCCGCCCCCCCCTTTTCCGCTTACGTTTTCCCAACTCCCCCGCTTAATCCCCa                                                                                                                                                                                                               >  2:327307/1‑298 (MQ=11)                                                                                         aTGAAGTTCATGTTCCATAGTGAAACCAACCTTGCAAATACGGATTACCGGGAAAACCGGTCCATGATACTGTCCGGTTTATCACTTTGGGAGAAAGGCAGTCCGCTGCATAAATCTACGCAACAGGTTAGAACCCAAGGCCCGATACGGCATGCGGACTGCAGGCAGAGAAAACTGGCCGATTTTCTCTGCACTGGAGGGATAATACAAGGCCTGATAAGCGTAGCGCATCAGGCGGTTCCACTCCGCGCCGCTCTTTTCCGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCAt                                                                                                                                                                                                              <  1:117192/298‑1 (MQ=255)                                                                                                         aTAGTGAAACCAACCTTGCAAATACGGATTACCGGGAAAACCGGTCCATGATACTGTCCGGTTTATCACTTTGGGAGAAAGGCAGTCCGCTGCATAAATCTACGCAACAGGTTAGAACCCAAGGCCCGATACGGCATGCGGACTGCAGGCAGAGAAAACTGGCCGATTTTCTCTGCACTGGAGGGATAATACAAGGCCTGATAAGCGTAGCGCATCAGGCGGTTCCACTCCGCGCCGCTCTTTTCCGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATctct                                                                                                                                                                                              >  1:301689/1‑298 (MQ=255)                                                                                                                 accaaccTTGCAAATACGGATTACCGGGAAAACCGGTCCATGATACTGTCCGGTTTATCACTTTGGGAGAAAGGCAGTCCGCTGCATAAATCTACGCAACAGGTTAGAACCCAAGGCCCGATACGGCATGCGGACTGCAGGCAGAGAAAACTGGCCGATTTTCTCTGCACTGGAGGGATAATACAAGGCCTGATAAGCGTAGCGCATCAGGCGGTTCCACTCCGCGCCGCTCTTTTCCGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCCCGCATGATCTCTTTTGCCGc                                                                                                                                                                                      >  1:234608/1‑298 (MQ=255)                                                                                                                                                                      tttATCACTTTGGGAGAAAGGCAGTCCGCTGCATAAATCTACGCAACAGGTTAGAACCCAAGGCCCGATACGGCATGCGGACTGCAGGCAGAGAAAACTGGCCGATTTTCTCTGCACTGGAGGGATAATACAAGGCCTGATAAGCGTAGCGCATCAGGCGGTTCCACTCCGCGCCGCTCTTTTCCGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTGCGCTCTTTACGCAGATCGGCATCATCCGGCAAAg                                                                                                                                 >  1:103909/1‑298 (MQ=255)                                                                                                                                                                                 gggAGAAAGGCAGTCCGCTGCATAAATCTACGCAACAGGTTAGAACCCAAGGCCCGATACGGCATGCGGACTGCAGGCAGAGAAAACTGGCTGATTTTCTCTGCACTGGAGGGATACTACAAGGCCTGATAAGCGTAGCGCATCAGGCGGTTCCACTCCGCGCCGCTCTTTTCCGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCCTCCCCCGCATGATCTCTTTTGCCGCTTCCGGGCTTTCCCCGCGGCGCTCGTTACCCCAACTGGCCACATCCGGCAACGGTTGccccggg                                                                                                                      >  2:192216/1‑294 (MQ=21)                                                                                                                                                                                                                     aGGTTAGAACCCAAGGCCCGATACGGCATGCGGACTGCAGGCAGAGAAAACTGGCCGATTTTCTCTGCACTGGAGGGATAATACAAGGCCTGATAAGCGTAGCGCATCAGGCGGTTCCACTCCGCGCCGCTCTTTTCCGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTGCGCTCTTTACGCAGATCGGCATCATCCGGCAAAGGTTGCCCGGTAAAGGCATGCAGAAACGCTTCGCACAGCAGCTCGCTg                                                                                  >  1:114990/1‑298 (MQ=255)                                                                                                                                                                                                                                       cGATACGGCATGCGGACTGCAGGCAGAGAGAACTGGCCGATTTTCTCTGCACTGGAGGGATAATACAAGGCCTGATAAGCGTAGCGCATCAGGCGGTTCCACTCCGCGCCGCTCTTTTCCGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTGCGCTCTTTACGCAGATCGGCATCATCCGGCAAAGGTTGCCCGGTAAAGGCATGCAGAAACGCTTCGCACAGCAGCTCGCTGTTGGTAGCGTGACGCAgg                                                                >  1:317884/1‑298 (MQ=255)                                                                                                                                                                                                                                         aTACGGCATGCGGACTGCAGGCAGAGAAAACTGGCCGATTTTCTCTGCACTGGAGGGATAATACAAGGCCTGATAAGCGTAGCGCATCAGGCGGTTCCACTCCGCGCCGCTCTTTTCCGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTGCGCTCTTTACGCACATCGGCATCATCCGGCAAAGGTTGCCCGGTAAAGGCATGCAGAAACGCTTCGCACAGCAGCTCGCTGTTGGTAGCGTGACGCAGgtt                                                              >  1:66293/1‑298 (MQ=255)                                                                                                                                                                                                                                            cgggaggcgggatGCAGGCAGCGAATACGTGCCGATTTTCTCTGAAGTGGAGGGATAATACAAGTGCTGATAAGCGTAGCGCTTCAGGCGGTTCCACTCCGCGCCGCTCTTTTCCGCTTGAGTTTTCCCACGTCTACGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTGCGCTCTTTACGCAGATCGGCATCATCCGGCAAAGGTTGCCCGGGAAAGGCATGCAGAAACGCTTCGCACAGCAGCTCGCTGTTGGTAGCGTGACGCAGgttgtt                                                           <  2:31346/286‑1 (MQ=255)                                                                                                                                                                                                                                                             gcagAGAAAACTGGCCGATTTTCTCTGCACTGGAGGGATAATACAAGGCCTGATAAGCGTAGCGCATCAGGCGGTTCCACTCCGCGCCGCTCTTTTCCGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTGCGCTCTTTACGCAGATCGGCATCATCCGGCAAAGGTTGCCCGGTAAAGGCATGCAGAAACGCTTCGCACAGCAGCTCGCTGTTGGTAGCGTGACGCAGGTTGTTCACCTGACGACgcgtgc                                          >  1:283134/1‑298 (MQ=255)                                                                                                                                                                                                                                                                gagaAAACTGGCCGATTTTCTCTGCACTGGAGGGATAATACAAGGCCTGATAAGCGTAGCGCATCAGGCGGTTCCACTCCGCGCCGCTCTTTTCCGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTGCGCTCTTTACGCAGATCGGCATCATCCGGCAAAGGTTGCCCGGTAAAGGCATGCAGAAACGCTTCGCACAGCAGCTCGCTGTTGGTAGCGTGACGCAGGTTGTTCACCTGACGACGCGTGCGtt                                       >  1:306518/1‑298 (MQ=255)                                                                                                                                                                                                                                                                   atagcTGGCCGCTTTTGTCTTCACGGGGGGGTTAATTCACGGCCTTGAAAGCGTAGCGCATCGTGAGGTTCCGCTCCGCGCCGCTCTTTTCCGCTTTAGTATTCCCACGTCTACGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGGCGCTGCGCTCTTTACGCAGATCGGCATCATCCGGCAAAGGTTGCCCGGTAAAGGCATGCAGAAACGCTTCGCACAGCAGCTCGCTGTTGGTAGCGGGACGCAGGTTGTTCACCTGACGACGCGTGCGTTCAt                                    <  2:214830/294‑1 (MQ=255)                                                                                                                                                                                                                                                                    aagcggaccGGTTTTTTCTGGACTGGAGGGACAAAACCAGGCCTGATAAGCGTAGCGCATCAGGCGGTTCCACTACGCGCCGCTTTTTTCCGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGGATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTGCGCTCGTTGCGCAGATCGGCATCATCCGGCAAAGGTTGCCCGGTAAAGGCATGCAGAAACGCTTCGCACAGCAGCTCGCTGTTGGTAGCGTGACGCAGGTTGTTCACCTGACGACGCGTGCGTTCATc                                   <  2:287261/291‑1 (MQ=255)                                                                                                                                                                                                                                                                                        cACTGGAGGGATAATACAAGGCCTGATAAGCGTAGCGCATCAGGCGGTTCCACTCCGCGCCGCTCTTTTCCGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTGCGCTCTTTACGCAGATCGGCATCATCCGGCAAAGGTTGCCCGGTAAAGGCATGCAGAAACGCTTCGCACAGCAGCTCGCTGTTGGTAGCGTGACGCAGGTTGTTCACCTGACGACGCGTGCGTTCATCGGTGAGGATTTTTAACACCt               <  1:192216/298‑1 (MQ=255)                                                                                                                                                                                                                                                                                              aGGGATAATACAAGGCCTGATAAGCGTAGCGCATCAGGCGGTTCCACTCCGCGCCGCTCTTTTCCGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTGCGCTCTTTACGCAGATCGGCATCATCCGGCAAAGGTTGCCCGGTAAAGGCATGCAGAAACGCTTCGCACAGCAGCTCGCTGTTGGTAGCGTGACGCAGGTTGTTCACCTGACGACGCGTGCGTTCATCGGTGAGGATTTTTAACACCTTAagag         >  1:251318/1‑298 (MQ=255)                                                                                                                                                                                                                                                                                                   taataCAAGGCCTGATAAGCGTAGCGCATCAGGCGGTTCCACTCCGCGCCGCTCTTTTCCGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCACGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTGCGCTCTTTACGCAGATCGGCATCATCCGGCAAAGGTTGCCCGGTAAAGGCATGCAGAAACGCTTCGCACAGCAGCTCGCTGTTGGTAGCGTGACGCAGGTTGTTCACCTGACGACGCGTGCGTTCATCGGTGAGGATTTTTAACACCTTAAGAGGAATg    >  1:46070/1‑298 (MQ=255)                                                                                                                                                                                                                                                                                                     ataCTAGGCGTGGTAAGGGCAGGGCCTTCGGCTGTTCCCCGCCGCCCCGGTCTTTTCCGCTTGTGTAGTCCCACGTCTCCGGGGTATCCCCCGTCGCACGCAGGGTCTCTTTTGGCGCTTCCTGGATTTCGTCGCTGCGCTCTTTCCGCAGGTCGGCATCATCCGGCAAAGGTTGCCCGGTAAAGGCATGCAGAAACGCTTCGCACAGCAGCTCGCTGTTGGTAGCGTGACGCAGGTTGTTCACCTGACGACGCGTGCGTTCATCGGTGAGGATTTTTAACACCTTAAGAGGAATGGa  <  2:155580/298‑1 (MQ=255)                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                      TGTTAGCGAATTTTTTGGTGCGATGACGACCATCAGGACGCAACACATCGACATCCAGTTTCTCTTTAGCGGTGTCGATACCGATATAATGAAGTTCATGTTCCATAGTGAAACCAACCTTGCAAATACGGATTACCGGGAAAACCGGTCCATGATACTGTCCGGTTTATCACTTTGGGAGAAAGGCAGTCCGCTGCATAAATCTACGCAACAGGTTAGAACCCAAGGCCCGATACGGCATGCGGACTGCAGGCAGAGAAAACTGGCCGATTTTCTCTGCACTGGAGGGATAATACAAGGCCTGATAAGCGTAGCGCATCAGGCGGTTCCACTCCGCGCCGCTCTTTTCCGCTTTAGTATTCCCACGTCTCCGGGTTAATCCCCATCTCACGCATGATCTCTTTTGCCGCTTCCGGGATTTCGTCGCTGCGCTCTTTACGCAGATCGGCATCATCCGGCAAAGGTTGCCCGGTAAAGGCATGCAGAAACGCTTCGCACAGCAGCTCGCTGTTGGTAGCGTGACGCAGGTTGTTCACCTGACGACGCGTGCGTTCATCGGTGAGGATTTTTAACACCTTAAGAGGAATGGA  >  CP006584/4312121‑4312710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.