Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | CP006584 | 2,312,767 | 3 bp→GAC | intergenic (‑77/+440) | LY180_11070 ← / ← LY180_11075 | hypothetical protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP006584 | 2,312,767 | 0 | A | G | 100.0% | 71.7 / NA | 27 | intergenic (‑77/+442) | LY180_11070/LY180_11075 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (13/14); total (13/14) | |||||||||||
* | CP006584 | 2,312,768 | 0 | G | A | 96.3% | 68.0 / NA | 27 | intergenic (‑78/+441) | LY180_11070/LY180_11075 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (12/14); minor base C (1/0); total (13/14) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.81e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 | |||||||||||
* | CP006584 | 2,312,769 | 0 | T | C | 100.0% | 77.1 / NA | 27 | intergenic (‑79/+440) | LY180_11070/LY180_11075 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (13/14); total (13/14) |
ACTGTAATAGCAATTTTTAATCGTGAACTACAGAATATATTCAACCAACTAATAGAATATTAGTTTATTAAAGGGGGAAGCGGTTTTCCCCCTTAGTTGCGTTTCAATTTGCCCATTACTTCAACAAATCAATCAACCGTAACAGAGCCACTAATAGCTCCAGTACGGCAATGAGCACGGTTAACTTTTGTGTCAGCGTGTCCATCCGCTCTCCTTATTAAGGAGCGCAACACCAGCACCTTACCCTTACACTGCCTGTCGATACTGGTTTACGTTTGTTGAGTCGCCATGTTGCACTCCGGATCAGAGCACTACCTGCGGCACCACCCGTCCGGTAGCCAGGACTTGAAATGGGTTCGATCCGGCGCAACTTCCCAACAGTCAGGATTATAAATCTCATTATCTTAATTGCAACACTGTCCAGAGGTGGTTATAATTCGTTCGTTGAGATGCCATGTTGCACTATCAGTAACTTAACATCAAAGTAGTAAATAAAAGAACCTGCCTCACCAGCAGGTTTTTTTATTTTCTGCGATCTACTTTCCAGATATTTTTTGCCA > CP006584/2312486‑2313045 ||| aCTGTAATAGCAATTTTTAATCGTGAACTACAGAATATATTCAACCAACTAATAGAATATTAGTTTATTAAAGGGGGAAGCGGTTTTCCCCCTTAGTTGCGTTTCAATTTGCCCATTACTTCAACAAATCAATCAACCGTAACAGAGCCACTAATAGCTCCAGTACGGCAATGAGCACGGTTAACTTTTGTGTCAGCGTGTCCATCCGCTCTCCTTATTAAGGAGCGCAACACCAGCACCTTACCCTTACACTGCCTGTCGATACTGGTTTACGTATGTTGGACCACGATGTTGCACt > 1:63806/1‑298 (MQ=255) tttaagtgaaaTTTTAATTAGGGAGCTAAAGAGTGTATGCAACCAACTAGTAGAATATTAGTTTATTAAAGGGGGAAGCGGTTTTCCCCCTTATTTGCGTTTCAATTTGCCCATTACTTCAACAAATCAATCAACCGTAACAGAGCCACTAAGAGCTCCAGTACGGCAATGAGCAAGGTTAACTTTTGTGTCAGCGTGTCCATCCGCTCTCCTTATTAAGGAGCGCAACACCAGCACCTTACCCTTACACTGCCTGTCGATACTGGTTTACGTATGTTGGACCACGATGTTGCACTcc < 2:163974/289‑1 (MQ=11) gTAATAGCAATTTTTAATCGTGAACTACAGAATATATTCAACCAACTAATAGAATATTAGTTTATTAAAGGGGGAAGCGGTTTTCCCCCTTAGTTGCGTTTCAATTTGCCCATTACTTCAACAAATCAATCAACCGTAACAGAGCCACTAATAGCTCCAGTACGGCAATGAGCACGGTTAACTTTTGTGTCAGCGTGTCCATCCGCTCTCCTTATTAAGGAGCGCAACACCAGCACCTTACCCTTACACTGCCTGTCGATACTGGTTTACGTATGTTGGACCACGATGTTGCACTCCg < 1:227587/298‑1 (MQ=255) tACAGAATATATTCAACCAACTAATAGAATATTAGTTTATTAAAGGGGGAAGCGGTTTTCCCCCTTAGTTGCGTTTCAATTTGCCCATTACTTCAACAAATCAATCAACCGTAACAGAGCCACTAATAGCTCCAGTACGGCAATGAGCACGGTTCACTTTTGTGTCAGCGTGTCCATCCGCACTCCTTATTAAGAAGCGCACTACCAACCCCTTACCCTTACACTGCCTTTCTGTACTGGGTTACGTTTGTTGGCCCACGATGTTGCCCTCCGGACCAGAGCACTACCtccagccccg > 2:291725/1‑289 (MQ=14) cAGAAATTATTCAACCAACTAATAGATTATTAGTTTATTAAAAGGGGAAGCGGTTTTCCCCCTTAGTGTGGTTTCAATTTGCCCATTACTTCAACAAATCAATCAACCGTAACAGAGCCACTAATAGCTCCAGTACGGCAATGAGCACGGTTAACTTTTGTGTCAGCGTGTCCATCCGCTCTCCTTATTAAGGAGCGCAACACCAGCACCTTACCCTTACACTGCCTGTCGATACTGGTTTACGTATGTTGGACCACGATGTTGCACTCCGGATCAGAGCACTACCTGCGGCaccacc < 2:63806/298‑1 (MQ=14) tatatTCAACCAACTAATAGAATATTAGTTTATTAAAGGGGGAAGCGGTTTTCCCACTTAGTTGCGTTTCAATTTGCCCATTACTTCAACAAATCAATCAACCGTAACAGAGCCACTCATAGCTCCAGTACGGCAATGAGCACGTTTAACTTTCGTGTCAGCGTGTCCATCCGCTCTCCTTATTACGTAGCGCAACACCCCCACCTTACCATTACCCTTCCTGCCGATACTGGTCTACGTATGTTGGACCACGATGTTGCACTCCGGAACAGAGCACTACCTACGGCCTCACCCGttc > 2:284485/1‑296 (MQ=14) gAATATTAGTTTATTAAAGGGGGAAGCGGTTTTCCCCCTTAGTTGCGTTTCAATTTGCCCATTACTTCAACAAATCAATCAACCGTAACAGAGCCACTAATAGCTCCAGTACGGCAATGAGCACGGTTAACTTTTGTGTCAGCGTGTCCATCCGCTCTCCTTATTAAGGAGCGCAACACCAGCACCTTACCCTTACACTGCCTGTCGATACTGGTTTACGTATGTTGGACCACGATGTTGCACTCCGGATCAGAGCACTACCTGCGGCACCACCCGTCCGGTAGCCAGGACTTGAAAt > 1:6047/1‑298 (MQ=16) gtggagtcgtttttCCCCCTTAGTTTGGTTTCAATTTTCCCATTAATTCAACAAATCACTCATCCGGAAAAGAGCCACTAATAGCTCCAGTACGGCAATGAGCACGGTTAACTTTTGTGTCAGCGTGTCCATCCGCTCTCCTTATTAAGGAGCGCAACACCAGCACCTTACCCTTACTCTGCCTGTCGATACTGGTTTACGTATGTTGGACCACGATGTTGCACTCCGGATCAGAGCACTACCTGCGGCACCACCCGTCCGGTAGCCAGGACTTGAAATGGGTTCGATCCGGCGCAAc < 2:62745/288‑1 (MQ=11) ttGCCCATTACTTCAACAAATCAATCAACCGTAACAGAGCCACTAATAGCTCCAGTACGGCAATGAGCACGGTTAACTTTTGTGTCAGCGTGTCCATCCGCTCTCCTTATTAAGGAGCGCAACACCAGCACCTTACCCTTACACTGCCTGTCGATACTGGTTTACGTATGTTGGACCACGATGTTGCACTCCGGATCAGAGCACTACCTGCGGCACCACCCGTCCGGTAGCCAGGACTTGAAATGGGTTCGATCCGGCGCAACTTCCCAACAGTCAGGATTATAAATCTCATTATCtt < 1:327913/298‑1 (MQ=255) tcaatcaaCCGTAACAGAGCCACTAATAGCTCCAGTACGGCAATGAGCACGGTTAACTTTTGTGTCAGCGTGTCCATCCGCTCTCCTTATTAAGGAGCGCAACACCAGCACCTTACCCTTACACTGCCTGTCGATACTGGTTTACGTATGTTGGACCACGATGTTGCACTCCGGATCAGAGCACTACCTGCGGCACCACCCGTCCGGTAGCCAGGACTTGAAATGGGTTCGATCCGGCGCAACTTCCCAACAGTCAGGATTATAAATCTCATTATCTTAATTGCAACACTGTCCagag > 1:122367/1‑298 (MQ=255) cGTAACAGAGCCACTAATAGCTCCAGTACGGCAATGAGCACGGTTAACTTTTGTGTCAGCGTGTCCATCCGCTCTCCTTATTAAGGAGCGCAACACCAGCACCTTACCCTTACACTGCCTGTCGATACTGGTTTACGTATGTTGGACCACGATGTTGCACTCCGGATCAGAGCACTACCTGCGGCACCACCCGTCCGGTAGCCAGGACTTAAACTGGGTTCGATCCGGCGCAACTTCCCAACCGTCAGGATTATAAATCCCATTATCTTACTTGCAACACTGTCCAGCGGTGGTtaat > 2:295564/1‑296 (MQ=11) agCCACTAATAGCTCCAGTACGGGAATGAGCACGGTTAACTTTTGTGTCAGCGTGTCCATCCGCTCTCCTTATTAAGGAGCGCAACACCAGCACCTTACCCTTACACTGCCTGTCGATACTGGTTTACGTATGTTGGACCACGATGTTGCACTCCGGATCAGAGCACTACCTGCGGCACCACCCGTCCGGTAGCCAGGACTTGAAATGGGTTCGATCCGGCGCAACTTCCCAACAGTCAGGATTATAAATCTCATTATCTTAATTGCAACACTGTCCAGAGGTGGTTATAAttcgttc < 1:165984/298‑1 (MQ=255) tAGTTCCATTACTGGAAGGAGCACGGTTAGCTTTCTCGGCCGCGTGTCCATCCGCTCTCCTTATGAAGGAGCCCAAGCCCAGCACCTTACCCTTCAACTGCCTGTCGATACTGGTTTACGTATGTTGGACCACTATGTTGCACTCCGGATCAGAGCACGACCTGCGGCACCACCCGTCCGGTAGCCAGGACTTGAAATGGGTTCGATCCGGCGCAACTTCCCAACAGTCAGGATTATAAATCTCATTATCTTAATTGCAACACTGTCCAGAGGTGGTTATAATTCGTTCGTTGAGATg < 2:30428/298‑1 (MQ=14) tACGGCAATGAGCACGGTTAACTTTTGTGTCAGCGTGTCCATCCGCTCTCCTTATTAAGGAGCGCAACACCAGCACCTTACCCTTACACTGCCTGTCGATACTGGTTTACGTATGTTGGACCACGATGTTGCACTCCGGATCAGAGCACTACCTGCGGCACCACCCGTCCGGTAGCCAGGACTTGAAATGGGTTCGATCCGGCGCAACTTCCCAACAGTCAGGATTATAAATCTCATTATCTTAATTGCAACACTGTCCAGAGGTGGTTATAATTCGTTCGTTGAGATGCCATGTTGc > 1:196580/1‑298 (MQ=255) aTGAGCACGGTTAACTTTTGTGTCAGCGTGTCCATCCGCTCTCCTTATTAAGGAGCGCAACACCAGCACCTTACCCTTACACTGCCTGTCGATACTGGTTTACGTATGTTGGACCACGATGTTGCACTCCGGATCAGAGCACTACCTGCGGCACCACCCGTCCGGTAGCCAGGACTTGAAATGGGTTCGATCCGGCGCAACTTCCCAACAGTCAGGATTATAAATCTCATTATCTTAATTGCAACACTGTCCAGAGGTGGTTATAATTCGTTCGTTGAGATGCCATGTTGCACTATCa < 1:284485/298‑1 (MQ=255) aCTTTTGTGTCAGCGTGTCCATCCGCTCTCCTTATTAAGGAGCGCAACACCAGCACCTTACCCTTACACTGCCTGTCGATACTGGTTTACGTATGTTGGACCACGATGTTGCACTCCGGATCAGAGCACTACCTGCGGCACCACCCGTCCGGTAGCCAGGACTTGAAATGGGTTCGATCCGGCGCAACTTCCCAACAGTCAGGATTATAAATCTCATTATCTTAATTGCAACACTGTCCAGAGGTGGTTATAATTCGTTCGTTGAGATGCCATGTTGCACTATCAGTAACTTAACATc < 1:295564/298‑1 (MQ=255) tatttaAGGACGACAACACCAGCCCTTTACCCTTACACTGCCTGTCGATACTGGTTTACGTGTGTTGGACCACGATTTTGCCTTCCGGAACAGAGCACTACCGGCGGCACCACCCGTCCGGGAGCCAGGACTTGAAATGGGTTCGATCCGGCGCAACTTCCCAACAGTCAGGATTATAAATCTCATTATCTTAATTGCAACACTGTCCAGAGGTGGTTATAATTCGTTCGTTGAGATGCCATGTTGCACTATCAGTAACTTAACATCAAAGTAGTAAATAAAAGAACCTGCCTCACca < 2:196580/295‑1 (MQ=18) attaAGTAGTGCAACACCAGCCACTTACCCTTGCAGTGCATGTGGATACGGGCTGAAGTATGTTGGACCACTATGTTGCCCTCCGGATCAGAGCACTCTCTGCGGCACCACCCGTCCGGTAGCTAGGACTTGAAATGGGTTCGATCCGGCGCTACTTCCCAACAGTCAGGATTATAAATCTCAGTATCTTGATTGCTACACTGTCCAGAGGTGGTGATAATTCGGTCGTTGAGATGCCATGTTGCACTATCAGTAACTTAGCATCAAAGTAGTAAATGAAAGAACCTGCCTCACcagc < 2:190194/298‑1 (MQ=255) aaGGAGCGCAACACCAGCACCTTACCCTTACACTGCCTGTCGATACTGGTTTACGTATGTTGGACCACGATGTTGCACTCCGGATCAGAGCACTACCTGCGGCACCACCCGTCCGGTAGCCAGGACTTGAAATGGGTTCGATCCGGCGCAACTTCCCAACAGTCAGGATTATAAATCTCATTATCTTAATTGCAACACTGTCCAGAGGTGGTTATAATTCGTTCGTTGAGATGCCATGTTGCACTATCAGTAACTTAACATCAAAGTAGTAAATAAAAGAACCTGCCTCACCAGCAgg < 1:291725/298‑1 (MQ=255) gcgcAACACCAGCACCTTACCCTTACACTGCCTGTCGATACTGGTTTACGTATGTTGGACCACGATGTTGCACTCCGGATCAGAGCACTACCTGCGGCACCACCCGTCCGGTAGCCAGGACTTGAAATGGGTTCGATCCGGCGCAACTTCCCAACAGTCAGGATTATAAATCTCATTATCTTAATTGCAACACTGTCCAGAggtggt < 1:175136/207‑1 (MQ=255) gcgcAACACCAGCACCTTACCCTTACACTGCCTGTCGATACTGGTTTACGTATGTTGGACCACGATGTTGCACTCCGGATCAGAGCACTACCTGCGGCACCACCCGTCCGGTAGCCAGGACTTGAAATGGGTTCGATCCGGCGCAACTTCCCAACAGTCAGGATTATAAATCTCATTATCTTAATTGCAACACTGTCCAGAggtggt > 2:175136/1‑207 (MQ=255) acacCAGCACCTTACCCTTACACTGCCTGTCGATACTGGTTTACGTATGTTGGACCACGATGTTGCACTCCGGATCAGAGCACTACCTGCGGCACCACCCGTCCGGTAGCCAGGACTTGAAATGGGTTCGATCCGGCGCAACTTCCCAACAGTCAGGATTATAAATCTCATTATCTTAATTGCAACACTGTCCAGAGGTGGTTATAATTCGTTCGTTGAGATGCCATGTTGCACTATCAGTAACTTAACATCAAAGTAGTAAATAAAAGAACCTGCCTCACCAGCAGGTTTTTTTAtt < 1:56794/298‑1 (MQ=255) ccttacACTGCCTGTCGATACTGGTTTACGTATGTTGGACCACGATGTTGCACTCCGGATCAGAGCACTACCTGCGGCACCACCCGTCCGGTAGCCAGGACTTGAAATGGGTTCGATCCGGCGCAACTTACCAACAGTCAGGATTATAAATCTCATTATCTTAAGTGCAACACTGTCCAGAGGGTGTTATAATTCGTTCGTTGATATGCCATGTTGCACTAGTAGTAACTTAACATCAAAGTACTAAATAAAAGAACCTGACTCAACAGCACGTTTTCTTATTTTCTTGGATCTAAtt > 2:140345/1‑298 (MQ=18) acTGCCTGTCGATACTGGTTTACGTATGTTGGACCACGATGTTGCACTCCGGATCAGAGCACTACCTGCGGCACCACCCGTCCGGTAGCCAGGACTTGAAATGGGTTCGATCCGGCGCAACTTCCCAACAGTCAGGATTATAAATCTCATTATCTTAATTGCAACACTGTCCAGAGGTGGTTATAATTCGTTCGTTGAGATGCCATGTTGCACTATCAGTAACTTAACATCAAAGTAGTAAATAAAAGAACCTGCCTCACAAGCAGGTTTTTTTATTTTCTGCGATCTACTTTCCAGa > 1:211811/1‑298 (MQ=255) gTCGATACTGGTTTACGTATGTTGGACCACGATGTTGCACTCCGGATCAGAGCACTACCTGCGGCACCACCCGTCCGGTAGCCAGGACTTGAAATGGGTTCGATCCGGCGCAACTTCCCAACAGTCAGGATTATAAATCTCATTATCTTAATTGCAACACTGTCCAGAGGTGGTTATAATTCGTTCGTTGAGATGCCATGTTGCACTATCAGTAACTTAACATCAAAGTAGTAAATAAAAGAACCTGCCTCACCAGCAGGTTTTTTTATTTTCTGCGATCTACTTTCCAGATAttttt > 1:66009/1‑298 (MQ=255) gATACTGGTTTACGTATGTTGGACCACGATGTTGCACTCCGGATCAGAGCACTACCTGCGGCACCACCCGTCCGGTAGCCAGGACTTGAAATGGGTTCGATCCGGCGCAACTTCCCAACAGTCAGGATTATAAATCTCATTATCTTAATTGCAACACTGTCCAGAGGTGGTTATAATTCGTTCGTTGAGATGCCATGTTGCACTATCAGTAACTTAACATCAAAGTAGTAAATAAAAGAACCTGCCTCACCAGCAGGTTTTTTTATTTTCTGCGATCTACTTTCCAGATATTTTTTGc > 1:148217/1‑298 (MQ=255) tACTAGTTTACGTATGTTGGACCACGATGTTGCACTCCGGATCAGAGCACTACCTGCGGCACCACACGTTCGGTAGCCAGGCCTTGAAATGAGTTCGAGCCGGCCCAACTTACCAACAGTCAGGATTATAAATCTCATTATCTTAATTGCAACTCTATACAAAGGTTGTTATAATTCGTTTCTTTAGAGGCCATGGTCAACAATCAGGAACTTTACATAAGAGTAGTAAACAAAAGAATCTGCCTCACCAGGAACTTGTTTTATTTACTGTGATTTTATTTCCAGTTAttttgtacta > 2:212129/1‑292 (MQ=12) ||| ACTGTAATAGCAATTTTTAATCGTGAACTACAGAATATATTCAACCAACTAATAGAATATTAGTTTATTAAAGGGGGAAGCGGTTTTCCCCCTTAGTTGCGTTTCAATTTGCCCATTACTTCAACAAATCAATCAACCGTAACAGAGCCACTAATAGCTCCAGTACGGCAATGAGCACGGTTAACTTTTGTGTCAGCGTGTCCATCCGCTCTCCTTATTAAGGAGCGCAACACCAGCACCTTACCCTTACACTGCCTGTCGATACTGGTTTACGTTTGTTGAGTCGCCATGTTGCACTCCGGATCAGAGCACTACCTGCGGCACCACCCGTCCGGTAGCCAGGACTTGAAATGGGTTCGATCCGGCGCAACTTCCCAACAGTCAGGATTATAAATCTCATTATCTTAATTGCAACACTGTCCAGAGGTGGTTATAATTCGTTCGTTGAGATGCCATGTTGCACTATCAGTAACTTAACATCAAAGTAGTAAATAAAAGAACCTGCCTCACCAGCAGGTTTTTTTATTTTCTGCGATCTACTTTCCAGATATTTTTTGCCA > CP006584/2312486‑2313045 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |